Clone Name | rbastl11e08 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | STS5_SCHPO (O74454) Protein sts5 | 31 | 0.70 | 2 | ACTHR_PIG (Q8HYN8) Adrenocorticotropic hormone receptor (ACTH re... | 30 | 1.2 | 3 | TNR11_HUMAN (Q9Y6Q6) Tumor necrosis factor receptor superfamily ... | 28 | 7.8 |
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>STS5_SCHPO (O74454) Protein sts5| Length = 1066 Score = 31.2 bits (69), Expect = 0.70 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 9/52 (17%) Frame = +1 Query: 79 ITPRNM-ELARQKGNLTVQMQALGV------LT--LTPMKRVAELIIHDEIK 207 +TPR + E+ + KGNL QM +LG+ LT P++R ++++H +++ Sbjct: 879 VTPRAVYEMQKYKGNLASQMMSLGIEDESDDLTHFTAPLERYGDIVVHYQLQ 930
>ACTHR_PIG (Q8HYN8) Adrenocorticotropic hormone receptor (ACTH receptor)| (ACTH-R) (Melanocortin receptor 2) (MC2-R) (Adrenocorticotropin receptor) Length = 297 Score = 30.4 bits (67), Expect = 1.2 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 9/79 (11%) Frame = -1 Query: 296 SLEARAGDSYKTI---IQKKAIARFREMS*VLLFISSCIISSATRFIGVNVKTPKACICT 126 SL A A D Y TI +Q + + R + VLL I +C I S + + P T Sbjct: 120 SLSAIAADRYITIFHALQYQRLVTPRRAAVVLLIIWACCIGSGITIVTFSHHVPAVIAFT 179 Query: 125 VKFP------FCLASSIFL 87 FP CL +FL Sbjct: 180 ALFPLMLVFILCLYGHMFL 198
>TNR11_HUMAN (Q9Y6Q6) Tumor necrosis factor receptor superfamily member 11A| precursor (Receptor activator of NF-KB) (Osteoclast differentiation factor receptor) (ODFR) (CD265 antigen) Length = 616 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 120 FNGTNASLGGLNINTDETSSRTNYT**NKEKYLGHLPESCNC 245 F GT +++G + N E RT++T + E YL +S +C Sbjct: 390 FTGTQSTVGSESCNCTEPLCRTDWTPMSSENYLQKEVDSGHC 431 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,346,432 Number of Sequences: 219361 Number of extensions: 637339 Number of successful extensions: 1354 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1334 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1354 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)