ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STS5_SCHPO (O74454) Protein sts5 31 0.70
2ACTHR_PIG (Q8HYN8) Adrenocorticotropic hormone receptor (ACTH re... 30 1.2
3TNR11_HUMAN (Q9Y6Q6) Tumor necrosis factor receptor superfamily ... 28 7.8

>STS5_SCHPO (O74454) Protein sts5|
          Length = 1066

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 9/52 (17%)
 Frame = +1

Query: 79   ITPRNM-ELARQKGNLTVQMQALGV------LT--LTPMKRVAELIIHDEIK 207
            +TPR + E+ + KGNL  QM +LG+      LT    P++R  ++++H +++
Sbjct: 879  VTPRAVYEMQKYKGNLASQMMSLGIEDESDDLTHFTAPLERYGDIVVHYQLQ 930



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>ACTHR_PIG (Q8HYN8) Adrenocorticotropic hormone receptor (ACTH receptor)|
           (ACTH-R) (Melanocortin receptor 2) (MC2-R)
           (Adrenocorticotropin receptor)
          Length = 297

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = -1

Query: 296 SLEARAGDSYKTI---IQKKAIARFREMS*VLLFISSCIISSATRFIGVNVKTPKACICT 126
           SL A A D Y TI   +Q + +   R  + VLL I +C I S    +  +   P     T
Sbjct: 120 SLSAIAADRYITIFHALQYQRLVTPRRAAVVLLIIWACCIGSGITIVTFSHHVPAVIAFT 179

Query: 125 VKFP------FCLASSIFL 87
             FP       CL   +FL
Sbjct: 180 ALFPLMLVFILCLYGHMFL 198



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>TNR11_HUMAN (Q9Y6Q6) Tumor necrosis factor receptor superfamily member 11A|
           precursor (Receptor activator of NF-KB) (Osteoclast
           differentiation factor receptor) (ODFR) (CD265 antigen)
          Length = 616

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 120 FNGTNASLGGLNINTDETSSRTNYT**NKEKYLGHLPESCNC 245
           F GT +++G  + N  E   RT++T  + E YL    +S +C
Sbjct: 390 FTGTQSTVGSESCNCTEPLCRTDWTPMSSENYLQKEVDSGHC 431


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,346,432
Number of Sequences: 219361
Number of extensions: 637339
Number of successful extensions: 1354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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