ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 33 0.27
2LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC... 28 5.1

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -3

Query: 188 EKMVMEMGIPNSISI 144
           EKMVMEMGIPNSISI
Sbjct: 922 EKMVMEMGIPNSISI 936



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>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)|
           (LOX2:Hv:2)
          Length = 932

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 185 KMVMEMGIPNSISI 144
           K VMEMGIPNSISI
Sbjct: 919 KTVMEMGIPNSISI 932


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,825,410
Number of Sequences: 219361
Number of extensions: 579035
Number of successful extensions: 1274
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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