ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1THIO2_ANASP (P20857) Thioredoxin 2 (Trx-2) 30 1.5
2SYH_LISMO (Q8Y708) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 30 1.9
3SYH_LISMF (Q71ZF0) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 30 1.9
4SYH_LISIN (Q92BJ3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 30 1.9
5ODP1_BUCAI (P57301) Pyruvate dehydrogenase E1 component (EC 1.2.... 29 2.5
6Y1411_SYNY3 (P72725) UPF0272 protein slr1411 28 4.3
7PDC2_CANAL (O60035) Protein PDC2 28 5.7
8PEL22_ARATH (Q93Z25) Probable pectate lyase 22 precursor (EC 4.2... 28 5.7
9HOXV_RALEU (P31914) Hydrogenase expression/formation protein hoxV 28 5.7
10SGCG_HUMAN (Q13326) Gamma-sarcoglycan (Gamma-SG) (35 kDa dystrop... 28 7.4
11YKL6_CAEEL (P42173) Hypothetical protein C03C10.6 28 7.4

>THIO2_ANASP (P20857) Thioredoxin 2 (Trx-2)|
          Length = 110

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 171 YSFFCQECQVM*QLCKLTRVTC--RRAVTRLTLQPLPTVLDSWSIHEPPALR 22
           ++ +C  CQ+M  L  L   T   R  V +L + P PT +  + +   PALR
Sbjct: 28  WASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALR 79



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>SYH_LISMO (Q8Y708) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 425

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = -1

Query: 201 RCKH-----ASFEQQYSFFCQECQVM*QLCKLTRVTCRRAVTRLTLQPLPTVLD 55
           R KH     A FE     FC ECQV      L  + C++      +Q  P++LD
Sbjct: 173 RLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILD 226



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>SYH_LISMF (Q71ZF0) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 425

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = -1

Query: 201 RCKH-----ASFEQQYSFFCQECQVM*QLCKLTRVTCRRAVTRLTLQPLPTVLD 55
           R KH     A FE     FC ECQV      L  + C++      +Q  P++LD
Sbjct: 173 RLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILD 226



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>SYH_LISIN (Q92BJ3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 425

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = -1

Query: 201 RCKH-----ASFEQQYSFFCQECQVM*QLCKLTRVTCRRAVTRLTLQPLPTVLD 55
           R KH     A FE     FC ECQV      L  + C++      +Q  P++LD
Sbjct: 173 RLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLIQSAPSILD 226



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>ODP1_BUCAI (P57301) Pyruvate dehydrogenase E1 component (EC 1.2.4.1)|
          Length = 887

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 144 LGTLDKRKNIAAQMKHVYTVGPIHVRKNYGVLVGKKE 254
           +G + + KNIA Q+K +   G IH+R  + + V   E
Sbjct: 397 MGVIAEGKNIAHQIKKININGIIHIRDRFNIPVSNDE 433



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>Y1411_SYNY3 (P72725) UPF0272 protein slr1411|
          Length = 422

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +3

Query: 120 LIYRAVTSLGTLDKRKNIAAQMKHVYTV----GPIHVRKNYGVLVGKK 251
           L++R  TSLG   +++   A  +   TV    GPI ++  YG   GKK
Sbjct: 330 LLFRETTSLGVRVRQQQRYALEREWQTVVIPHGPIRIKVAYGYQAGKK 377



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>PDC2_CANAL (O60035) Protein PDC2|
          Length = 836

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 227 LRCVGWKKRTMHSISQVLLFSCW-QLNLYTLL 319
           +R + W  R+ HS+S   +FS W + +L+ LL
Sbjct: 428 IRAIEWITRSWHSVSSERIFSSWKKTHLFNLL 459



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>PEL22_ARATH (Q93Z25) Probable pectate lyase 22 precursor (EC 4.2.2.2)|
          Length = 432

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 32  GGS--WIDQLSNTVGSGCSVNLVTALRHVTRVNLQSCYITWHS 154
           GGS  W+D  S    S C+  L+ A+R  T + + + Y+T H+
Sbjct: 236 GGSHVWVDHCSL---SNCNDGLIDAIRGSTAITISNNYLTHHN 275



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>HOXV_RALEU (P31914) Hydrogenase expression/formation protein hoxV|
          Length = 383

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 171 IAAQMKHVYTVGPIHVRKNYGVLVGKKEQCIPLARSFCSPVGN 299
           +A  + H+       VR++ G+LV   + C+P    F   +G+
Sbjct: 337 VAHMLAHLAPFDAADVRRSIGILVAAYDPCVPYTVEFAESLGD 379



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>SGCG_HUMAN (Q13326) Gamma-sarcoglycan (Gamma-SG) (35 kDa dystrophin-associated|
           glycoprotein) (35DAG)
          Length = 290

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 161 KKEYCCSNEA-CLHRGPNSCTEKLRCVGWKKRTMHSISQVLLFSCWQLNLYTLLYVL 328
           +++Y  + E  C+ R  N    K+   GW+KR ++ +  +LL     +NL   +++L
Sbjct: 2   REQYTTATEGICIERPENQYVYKIGIYGWRKRCLY-LFVLLLLIILVVNLALTIWIL 57



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>YKL6_CAEEL (P42173) Hypothetical protein C03C10.6|
          Length = 870

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 132 LCKLTRVTCRRAVTRLTLQPLPTVLDSWSIHEPPALRKMQH 10
           LC+L  V C RA T  +      ++D W+   P  L+ + H
Sbjct: 736 LCQLWTVYCERAATYSSTTAFAHLVDFWARVTPAILQLLSH 776


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,906,328
Number of Sequences: 219361
Number of extensions: 952541
Number of successful extensions: 2896
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2896
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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