ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete ge... 78 2e-11
2gb|AE010353.1| Methanopyrus kandleri AV19 section 52 of 157 of t... 42 1.0
3ref|XM_913045.2| PREDICTED: Mus musculus similar to putative phe... 42 1.0
4emb|CT009574.5| Mouse DNA sequence from clone RP23-140H11 on chr... 42 1.0
5gb|AC151273.2| Mus musculus BAC clone RP24-237J7 from chromosome... 42 1.0
6gb|BT012939.1| Lycopersicon esculentum clone 114107R, mRNA sequence 40 4.0
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.0
8gb|AC111137.10| Mus musculus chromosome 5, clone RP23-357C4, com... 40 4.0
9emb|X63560.1|LESHKINP L.esculentum mRNA for shikimate kinase pre... 40 4.0
10emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, c... 40 4.0
11gb|AC107964.4| Homo sapiens chromosome 8, clone CTD-2328I8, comp... 40 4.0
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
13gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 4.0
14dbj|AK110807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.0
15gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 40 4.0
16emb|AL136332.5|CNS01DW4 Human chromosome 14 DNA sequence BAC R-8... 40 4.0
17gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 4.0

>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome
          Length = 452528

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                 
Query: 130    acaactttattacatcatcctgatacatatcaacattagtagtctttttcg 180
              |||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct: 212855 acaactttctaacatcatcctgatacatatcaacattagaagtctttttcg 212805



to top

>gb|AE010353.1| Methanopyrus kandleri AV19 section 52 of 157 of the complete genome
          Length = 11344

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 257  agggtatcccgagttcttcga 277
            |||||||||||||||||||||
Sbjct: 5094 agggtatcccgagttcttcga 5074



to top

>ref|XM_913045.2| PREDICTED: Mus musculus similar to putative pheromone receptor
          (Go-VN5) (LOC637382), mRNA
          Length = 3168

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 31 tcctgttctccatcatgaaga 51
          |||||||||||||||||||||
Sbjct: 35 tcctgttctccatcatgaaga 55



to top

>emb|CT009574.5| Mouse DNA sequence from clone RP23-140H11 on chromosome 17, complete
              sequence
          Length = 204822

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 31     tcctgttctccatcatgaaga 51
              |||||||||||||||||||||
Sbjct: 138623 tcctgttctccatcatgaaga 138603



to top

>gb|AC151273.2| Mus musculus BAC clone RP24-237J7 from chromosome 17, complete sequence
          Length = 143288

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    tcctgttctccatcatgaaga 51
             |||||||||||||||||||||
Sbjct: 45613 tcctgttctccatcatgaaga 45633



to top

>gb|BT012939.1| Lycopersicon esculentum clone 114107R, mRNA sequence
          Length = 1303

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 gtgcactcttcagctctttc 221
           ||||||||||||||||||||
Sbjct: 33  gtgcactcttcagctctttc 52



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 75      tcattttcaagggttgatga 94
               ||||||||||||||||||||
Sbjct: 2821759 tcattttcaagggttgatga 2821740



to top

>gb|AC111137.10| Mus musculus chromosome 5, clone RP23-357C4, complete sequence
          Length = 197271

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    ctaaaatgtttgcacaacaa 244
              ||||||||||||||||||||
Sbjct: 147149 ctaaaatgtttgcacaacaa 147168



to top

>emb|X63560.1|LESHKINP L.esculentum mRNA for shikimate kinase precursor
          Length = 1293

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 gtgcactcttcagctctttc 221
           ||||||||||||||||||||
Sbjct: 61  gtgcactcttcagctctttc 80



to top

>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2
          Length = 197975

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   aacctaaaatgtttgcacaa 241
             ||||||||||||||||||||
Sbjct: 21627 aacctaaaatgtttgcacaa 21646



to top

>gb|AC107964.4| Homo sapiens chromosome 8, clone CTD-2328I8, complete sequence
          Length = 138594

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     acctgaacaagaatatcatt 22
             ||||||||||||||||||||
Sbjct: 96680 acctgaacaagaatatcatt 96699



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 75      tcattttcaagggttgatga 94
               ||||||||||||||||||||
Sbjct: 2821870 tcattttcaagggttgatga 2821851



to top

>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0038D20, from chromosome 3, complete sequence
          Length = 165395

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    tcattttcaagggttgatga 94
             ||||||||||||||||||||
Sbjct: 93715 tcattttcaagggttgatga 93696



to top

>dbj|AK110807.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F01, full
           insert sequence
          Length = 1400

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  tcattttcaagggttgatga 94
           ||||||||||||||||||||
Sbjct: 554 tcattttcaagggttgatga 535



to top

>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23
          Length = 91849

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  aacctaaaatgtttgcacaa 241
            ||||||||||||||||||||
Sbjct: 2753 aacctaaaatgtttgcacaa 2772



to top

>emb|AL136332.5|CNS01DW4 Human chromosome 14 DNA sequence BAC R-807G16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 209157

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   ctaaaatgtttgcacaacaa 244
             ||||||||||||||||||||
Sbjct: 87297 ctaaaatgtttgcacaacaa 87316



to top

>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 172     tctttttcggattttcagaa 191
               ||||||||||||||||||||
Sbjct: 2057361 tctttttcggattttcagaa 2057380


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,736,324
Number of Sequences: 3902068
Number of extensions: 2736324
Number of successful extensions: 63504
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63440
Number of HSP's gapped (non-prelim): 64
length of query: 305
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 283
effective length of database: 17,147,199,772
effective search space: 4852657535476
effective search space used: 4852657535476
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top