ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl11d10 |
|---|---|
| Clone Library Name | barley_pub |
>LHX2_RAT (P36198) LIM/homeobox protein Lhx2 (Homeobox protein LH-2)| Length = 426 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = -3 Query: 236 LFFLPKRGRRQGVKCGVWSICFY*DQVCWNNDG*V*FIVYCWKDVFRRWTFYRCVMSLPG 57 L + K+ + +KC + + C++ DG +YC +D +RR++ RC G Sbjct: 65 LLAVDKQWHMRCLKCCECKLNLESELTCFSKDG----SIYCKEDYYRRFSVQRCARCHLG 120 Query: 56 I 54 I Sbjct: 121 I 121
>LHX2_MOUSE (Q9Z0S2) LIM/homeobox protein Lhx2| Length = 406 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = -3 Query: 236 LFFLPKRGRRQGVKCGVWSICFY*DQVCWNNDG*V*FIVYCWKDVFRRWTFYRCVMSLPG 57 L + K+ + +KC + + C++ DG +YC +D +RR++ RC G Sbjct: 66 LLAVDKQWHMRCLKCCECKLNLESELTCFSKDG----SIYCKEDYYRRFSVQRCARCHLG 121 Query: 56 I 54 I Sbjct: 122 I 122
>LHX2_HUMAN (P50458) LIM/homeobox protein Lhx2 (Homeobox protein LH-2)| Length = 406 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = -3 Query: 236 LFFLPKRGRRQGVKCGVWSICFY*DQVCWNNDG*V*FIVYCWKDVFRRWTFYRCVMSLPG 57 L + K+ + +KC + + C++ DG +YC +D +RR++ RC G Sbjct: 66 LLAVDKQWHMRCLKCCECKLNLESELTCFSKDG----SIYCKEDYYRRFSVQRCARCHLG 121 Query: 56 I 54 I Sbjct: 122 I 122
>COX2_APILI (P20375) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 225 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = -2 Query: 180 HLFLLGPGMLE**WVSVIYSLLLERCFSSLDIL*MCH--VPPRYPLIFIVEHWKWKH 16 +LFLL +E W + +LL CF SL IL + V P + + I W W + Sbjct: 52 NLFLLKNHNIEIIWTIIPIIILLIICFPSLKILYLIDEIVNPFFSIKSIGHQWYWSY 108
>COX2_APIKO (P50268) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 225 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = -2 Query: 180 HLFLLGPGMLE**WVSVIYSLLLERCFSSLDIL*MCH--VPPRYPLIFIVEHWKWKH 16 +LFLL +E W V +LL CF SL IL + + P + + I W W + Sbjct: 52 NLFLLKNHNIEIIWTIVPIVILLIICFPSLKILYLIDEIINPFFSIKSIGHQWYWSY 108
>CD82_HUMAN (P27701) CD82 antigen (Inducible membrane protein R2) (C33 antigen)| (IA4) (Metastasis suppressor Kangai 1) (Suppressor of tumorigenicity-6) (Tetraspanin-27) (Tspan-27) Length = 267 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -1 Query: 271 VVYRFDCWGLPVSSFYRSVEGAKESSVESGPFVFIRTRYVGIMMG 137 V+ F W L S + SV SS+ G +VFI V ++MG Sbjct: 26 VILGFGVWILADKSSFISVLQTSSSSLRMGAYVFIGVGAVTMLMG 70
>CD82_RAT (O70352) CD82 antigen (Metastasis suppressor homolog)| Length = 266 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = -1 Query: 271 VVYRFDCWGLPVSSFYRSVEGAKESSVESGPFVFIRTRYVGIMMG 137 V+ F W L S + SV SS++ G +VFI + ++MG Sbjct: 26 VILGFGVWILADKSSFISVLQTSSSSLQVGAYVFIGVGAITMLMG 70
>M3K10_HUMAN (Q02779) Mitogen-activated protein kinase kinase kinase 10 (EC| 2.7.11.25) (Mixed lineage kinase 2) (Protein kinase MST) Length = 954 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = +1 Query: 190 PHLTPWRLPRFGKKKRQEGPSSRTCTLRSSSPPAHKH*KLDCPDERADQ 336 P L PW+L FG + P SR T S PP+ + LD E +Q Sbjct: 894 PRLDPWKLVSFG-RTLTISPPSRPDTPESPGPPSVQPTLLDMDMEGQNQ 941
>LHX9_MOUSE (Q9WUH2) LIM/homeobox protein Lhx9| Length = 388 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = -3 Query: 236 LFFLPKRGRRQGVKCGVWSICFY*DQVCWNNDG*V*FIVYCWKDVFRRWTFYRCVMSLPG 57 L + K+ + +KC + + C+ DG +YC +D +RR++ RC G Sbjct: 75 LLAVDKQWHLRCLKCCECKLALESELTCFAKDG----SIYCKEDYYRRFSVQRCARCHLG 130 Query: 56 I 54 I Sbjct: 131 I 131
>LHX9_HUMAN (Q9NQ69) LIM/homeobox protein Lhx9| Length = 388 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = -3 Query: 236 LFFLPKRGRRQGVKCGVWSICFY*DQVCWNNDG*V*FIVYCWKDVFRRWTFYRCVMSLPG 57 L + K+ + +KC + + C+ DG +YC +D +RR++ RC G Sbjct: 75 LLAVDKQWHLRCLKCCECKLALESELTCFAKDG----SIYCKEDYYRRFSVQRCARCHLG 130 Query: 56 I 54 I Sbjct: 131 I 131
>NCAP_THOGV (P89216) Nucleoprotein| Length = 454 Score = 27.3 bits (59), Expect = 9.2 Identities = 9/29 (31%), Positives = 17/29 (58%) Frame = -1 Query: 265 YRFDCWGLPVSSFYRSVEGAKESSVESGP 179 ++++ W P+ S RS+EG+K + P Sbjct: 352 FQYEYWSKPLKSAPRSIEGSKRGQISCRP 380
>SYTL4_MOUSE (Q9R0Q1) Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)| Length = 673 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +1 Query: 94 RRKTSFQQ*TINHTYPSLFQHTWS**KQMDQTPHLTPWRLPRFGK 228 +RKTS ++ TIN Y F++ S +T + W RFG+ Sbjct: 412 KRKTSIKRDTINPLYDETFRYEISESLLAQRTLQFSVWHHGRFGR 456
>CD82_MOUSE (P40237) CD82 antigen (Inducible membrane protein R2) (C33 antigen)| (IA4) Length = 266 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = -1 Query: 271 VVYRFDCWGLPVSSFYRSVEGAKESSVESGPFVFIRTRYVGIMMG 137 V+ F W L + + SV SS++ G +VFI + I+MG Sbjct: 26 VILGFGVWILADKNSFISVLQTSSSSLQVGAYVFIGVGAITIVMG 70
>SYTL4_RAT (Q8VHQ7) Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)| Length = 672 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +1 Query: 94 RRKTSFQQ*TINHTYPSLFQHTWS**KQMDQTPHLTPWRLPRFGK 228 +RKTS ++ TIN Y F++ S +T + W RFG+ Sbjct: 411 KRKTSIKRDTINPLYDETFRYEISESLLAQRTLQFSVWHHGRFGR 455 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,787,940 Number of Sequences: 219361 Number of extensions: 1359156 Number of successful extensions: 2925 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2863 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2924 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
