ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RCC1_XENLA (P25183) Regulator of chromosome condensation 30 1.7
2LAC9_KLULA (P08657) Lactose regulatory protein LAC9 28 8.2

>RCC1_XENLA (P25183) Regulator of chromosome condensation|
          Length = 424

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = +2

Query: 59  CVHNQVKPYGRIHWQ-ALCATIITLHVWNSNTQLQ*LAIENFHLL-----QGCYGYCNMT 220
           C+H + K  GR+H+Q   C    T  V +    +    + N+H L     Q CY   N+T
Sbjct: 234 CIHLKAKGSGRVHFQDVFCGAYFTFAV-SQEGHVYGFGLSNYHQLGTKNTQACYAPQNLT 292



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>LAC9_KLULA (P08657) Lactose regulatory protein LAC9|
          Length = 865

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 2   AFSQHQQPLLALNSSKKIYCVHN-QVKPYGRIHWQALCATIITLHVWNSNT 151
           A+ +H   L  L S +  +  +N Q+KP     W  L   ++ L  W SN+
Sbjct: 391 AYFKHYHALYPLVSKEMFFAQYNDQIKPENVEIWHILLNAVLALGSWCSNS 441


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,025,032
Number of Sequences: 219361
Number of extensions: 616804
Number of successful extensions: 1049
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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