ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6... 28 4.9
2SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6... 28 4.9
3MHPD_ECOLI (P77608) 2-keto-4-pentenoate hydratase (EC 4.2.1.-) (... 28 8.4

>SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)|
           (Lysine--tRNA ligase 2) (LysRS 2)
          Length = 1172

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 103 VLPLQRRNAVHKGHRP 150
           VLP  RRN VH GH P
Sbjct: 628 VLPFSRRNRVHTGHHP 643



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>SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)|
           (Lysine--tRNA ligase 2) (LysRS 2)
          Length = 1172

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 103 VLPLQRRNAVHKGHRP 150
           VLP  RRN VH GH P
Sbjct: 628 VLPFSRRNRVHTGHHP 643



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>MHPD_ECOLI (P77608) 2-keto-4-pentenoate hydratase (EC 4.2.1.-)|
           (2-hydroxypentadienoic acid hydratase)
          Length = 269

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 106 EHIIPRIAVNGN*IQDWNFNLPNKVASQLSC 14
           E ++P + V G+ I+DW+    + VA   SC
Sbjct: 131 EWVLPALEVVGSRIRDWSIQFVDTVADNASC 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,744,718
Number of Sequences: 219361
Number of extensions: 521514
Number of successful extensions: 1270
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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