ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ496571.2|HVU496571 Hordeum vulgare partial mRNA for putati... 420 e-115
2tpe|BN000093.1|HVA000093 TPA: TPA_exp: Hordeum vulgare mRNA for ... 420 e-115
3gb|AY841792.1| Triticum aestivum cysteine protease (CP) mRNA, co... 214 8e-53
4gb|BT008950.1| Triticum aestivum clone wdk1c.pk009.j19:fis, full... 188 5e-45
5gb|DQ344624.1| Triticum aestivum vacuolar ATP synthase subunit E... 186 2e-44
6gb|AF527926.1| Candida glabrata strain NRRL Y-65 actin (act1) ge... 40 2.7
7ref|XM_448768.1| Candida glabrata CBS138, CAGL0K12694g partial mRNA 40 2.7
8emb|CR380957.1| Candida glabrata strain CBS138 chromosome K comp... 40 2.7
9emb|AJ389073.1|CGL389073 Candida glabrata partial act1 gene, str... 40 2.7
10emb|AJ389072.1|CGL389072 Candida glabrata partial act1 gene, str... 40 2.7
11emb|CR860490.1| Pongo pygmaeus mRNA; cDNA DKFZp469F0716 (from cl... 40 2.7
12gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 gen... 40 2.7
13dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
14gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.7
15gb|AF069746.1|AF069746 Candida glabrata actin gene, complete cds 40 2.7 
>emb|AJ496571.2|HVU496571 Hordeum vulgare partial mRNA for putative cysteine proteinase (sf42
           gene)
          Length = 397

 Score =  420 bits (212), Expect = e-115
 Identities = 212/212 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccacatcaaaatagcgtgtggcaaacatcacatgcatgggcgtagcaaatggagcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agccacatcaaaatagcgtgtggcaaacatcacatgcatgggcgtagcaaatggagcaga 291

                                                                       
Query: 61  tgcataagttatacagcaagcatactgttgcggcttcgcatctccgctgctgataagcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgcataagttatacagcaagcatactgttgcggcttcgcatctccgctgctgataagcga 231

                                                                       
Query: 121 cgatggagcctagcgactactaggtattaaagtttcattctagcgatacatagaaaccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 cgatggagcctagcgactactaggtattaaagtttcattctagcgatacatagaaaccaa 171

                                           
Query: 181 gatcgactccaggagggccgccgatcagatca 212
           ||||||||||||||||||||||||||||||||
Sbjct: 170 gatcgactccaggagggccgccgatcagatca 139
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>tpe|BN000093.1|HVA000093 TPA: TPA_exp: Hordeum vulgare mRNA for putative cysteine proteinase
            precursor (sf42 gene)
          Length = 1438

 Score =  420 bits (212), Expect = e-115
 Identities = 212/212 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    agccacatcaaaatagcgtgtggcaaacatcacatgcatgggcgtagcaaatggagcaga 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 agccacatcaaaatagcgtgtggcaaacatcacatgcatgggcgtagcaaatggagcaga 1332

                                                                        
Query: 61   tgcataagttatacagcaagcatactgttgcggcttcgcatctccgctgctgataagcga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1331 tgcataagttatacagcaagcatactgttgcggcttcgcatctccgctgctgataagcga 1272

                                                                        
Query: 121  cgatggagcctagcgactactaggtattaaagtttcattctagcgatacatagaaaccaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 cgatggagcctagcgactactaggtattaaagtttcattctagcgatacatagaaaccaa 1212

                                            
Query: 181  gatcgactccaggagggccgccgatcagatca 212
            ||||||||||||||||||||||||||||||||
Sbjct: 1211 gatcgactccaggagggccgccgatcagatca 1180
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>gb|AY841792.1| Triticum aestivum cysteine protease (CP) mRNA, complete cds
          Length = 1525

 Score =  214 bits (108), Expect = 8e-53
 Identities = 192/217 (88%), Gaps = 11/217 (5%)
 Strand = Plus / Minus

                                                                        
Query: 1    agccacatcaaaatagcgtgtggcaaacatcacatgcatgggcgtagcaaatggagcaga 60
            ||||||||| ||||||||||||||| ||||     |||||| ||||||||||  |||| |
Sbjct: 1447 agccacatccaaatagcgtgtggcagacat-----gcatgg-cgtagcaaatttagcaaa 1394

                                                                        
Query: 61   tgcataagttatacagcaagcatactgttgcggcttcgcatctccgctgctgata----a 116
            |||| |||||||||||||||||| ||||||||||||||||||| |||||||||||    |
Sbjct: 1393 tgcacaagttatacagcaagcattctgttgcggcttcgcatcttcgctgctgataccaca 1334

                                                                        
Query: 117  gcgacgatggagcctagc-gactactaggtattaaagtttcattctagcgatacatagaa 175
             ||||||||||||||||| |||||||||||||||||||||| |||||||||||||  |||
Sbjct: 1333 acgacgatggagcctagccgactactaggtattaaagtttctttctagcgatacaccgaa 1274

                                                 
Query: 176  accaagatcgactccaggagggccgccgatcagatca 212
            ||||||||||||||||||||||| |||||||| ||||
Sbjct: 1273 accaagatcgactccaggagggctgccgatcacatca 1237
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>gb|BT008950.1| Triticum aestivum clone wdk1c.pk009.j19:fis, full insert mRNA
           sequence
          Length = 935

 Score =  188 bits (95), Expect = 5e-45
 Identities = 192/221 (86%), Gaps = 15/221 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccacatcaaaatagcgtgtggcaaacatcacatgcatgggcgtagcaaatggagcaga 60
           ||||||||| ||||||||||||||| ||||     |||||| ||||||||||  |||| |
Sbjct: 870 agccacatccaaatagcgtgtggcagacat-----gcatgg-cgtagcaaatttagcaaa 817

                                                                       
Query: 61  tgcataagttatacagcaagcatactgttgcggcttcgcatctccgctgctgata----a 116
           ||||||||||||||||||||||| || ||||| |||||||||| |||||||||||    |
Sbjct: 816 tgcataagttatacagcaagcattctattgcgacttcgcatcttcgctgctgataccaca 757

                                                                       
Query: 117 gcgacgatggagcctag-cgactactaggtattaaagtttcattctagcgatacata--- 172
            |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |   
Sbjct: 756 acgacgatggagcctagccgactactacgtattaaagtttctttctagcgatacacacac 697

                                                    
Query: 173 -gaaaccaagatcgactccaggagggccgccgatcagatca 212
            ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 696 cgaaaccaagatcgacaccaggagggccgccgatcagatca 656
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>gb|DQ344624.1| Triticum aestivum vacuolar ATP synthase subunit E (VATE) mRNA,
            complete cds
          Length = 1970

 Score =  186 bits (94), Expect = 2e-44
 Identities = 191/220 (86%), Gaps = 15/220 (6%)
 Strand = Plus / Plus

                                                                        
Query: 2    gccacatcaaaatagcgtgtggcaaacatcacatgcatgggcgtagcaaatggagcagat 61
            |||||||| ||||||||||||||| ||||     |||||| ||||||||||  |||| ||
Sbjct: 1659 gccacatccaaatagcgtgtggcagacat-----gcatgg-cgtagcaaatttagcaaat 1712

                                                                        
Query: 62   gcataagttatacagcaagcatactgttgcggcttcgcatctccgctgctgata----ag 117
            |||||||||||||||||||||| || ||||| |||||||||| |||||||||||    | 
Sbjct: 1713 gcataagttatacagcaagcattctattgcgacttcgcatcttcgctgctgataccacaa 1772

                                                                        
Query: 118  cgacgatggagcctag-cgactactaggtattaaagtttcattctagcgatacata---- 172
            |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |    
Sbjct: 1773 cgacgatggagcctagccgactactacgtattaaagtttctttctagcgatacacacacc 1832

                                                    
Query: 173  gaaaccaagatcgactccaggagggccgccgatcagatca 212
            ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1833 gaaaccaagatcgacaccaggagggccgccgatcagatca 1872
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>gb|AF527926.1| Candida glabrata strain NRRL Y-65 actin (act1) gene, partial cds
          Length = 897

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   tcaaaatagcgtgtggcaaa 27
           ||||||||||||||||||||
Sbjct: 403 tcaaaatagcgtgtggcaaa 384
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>ref|XM_448768.1| Candida glabrata CBS138, CAGL0K12694g partial mRNA
          Length = 1083

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   tcaaaatagcgtgtggcaaa 27
           ||||||||||||||||||||
Sbjct: 484 tcaaaatagcgtgtggcaaa 465
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>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence
          Length = 1302002

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 8       tcaaaatagcgtgtggcaaa 27
               ||||||||||||||||||||
Sbjct: 1259029 tcaaaatagcgtgtggcaaa 1259010
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>emb|AJ389073.1|CGL389073 Candida glabrata partial act1 gene, strain CBS 138 T, isolate WM 53
          Length = 979

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   tcaaaatagcgtgtggcaaa 27
           ||||||||||||||||||||
Sbjct: 434 tcaaaatagcgtgtggcaaa 415
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>emb|AJ389072.1|CGL389072 Candida glabrata partial act1 gene, strain DUMC 19-1112, isolate WM
           54
          Length = 979

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   tcaaaatagcgtgtggcaaa 27
           ||||||||||||||||||||
Sbjct: 434 tcaaaatagcgtgtggcaaa 415
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>emb|CR860490.1| Pongo pygmaeus mRNA; cDNA DKFZp469F0716 (from clone DKFZp469F0716)
          Length = 3762

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  tccaggagggccgccgatca 207
            ||||||||||||||||||||
Sbjct: 1426 tccaggagggccgccgatca 1407
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>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete
             sequence
          Length = 148816

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    acatcacatgcatgggcgta 46
             ||||||||||||||||||||
Sbjct: 65430 acatcacatgcatgggcgta 65449
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 27       acatcacatgcatgggcgta 46
                ||||||||||||||||||||
Sbjct: 17866611 acatcacatgcatgggcgta 17866592
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 27       acatcacatgcatgggcgta 46
                ||||||||||||||||||||
Sbjct: 17875864 acatcacatgcatgggcgta 17875845
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>gb|AF069746.1|AF069746 Candida glabrata actin gene, complete cds
          Length = 2080

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    tcaaaatagcgtgtggcaaa 27
            ||||||||||||||||||||
Sbjct: 1451 tcaaaatagcgtgtggcaaa 1432


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,431,911
Number of Sequences: 3902068
Number of extensions: 1431911
Number of successful extensions: 95089
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95005
Number of HSP's gapped (non-prelim): 76
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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