ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT2_CANGA (P15114) Metallothionein-2 (MT-2) (Metallothionein-II)... 30 2.3
2GRN_MOUSE (P28798) Granulins precursor (Proepithelin) (PEPI) (PC... 29 3.9
3FIXC_RHISN (Q53208) Protein fixC 28 8.6

>MT2_CANGA (P15114) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)|
           [Contains: Metallothionein-2' (MT-2')
           (Metallothionein-II') (MT-II')]
          Length = 51

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 116 SCCGVPLYICCNSITEWCCTRAVRCLTC 33
           +CC  P   C NS +  C  +  +C TC
Sbjct: 22  NCCAKPACACTNSASNECSCQTCKCQTC 49



to top

>GRN_MOUSE (P28798) Granulins precursor (Proepithelin) (PEPI) (PC cell-derived|
           growth factor) (PCDGF) [Contains: Acrogranin;
           Granulin-1; Granulin-2; Granulin-3; Granulin-4;
           Granulin-5; Granulin-6; Granulin-7]
          Length = 589

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 119 YSCCGVPLYICCNSITEWCCTRAVRCLTCFY 27
           + CC +P  +CC S  + CC +   CL   Y
Sbjct: 384 WGCCPIPEAVCC-SDNQHCCPQGFTCLAQGY 413



to top

>FIXC_RHISN (Q53208) Protein fixC|
          Length = 435

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 136 QNFINSSATPKIEKPILT*AALV 204
           QNF+    TPKIEK   T AAL+
Sbjct: 393 QNFVRVDGTPKIEKERATTAALI 415


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,526,326
Number of Sequences: 219361
Number of extensions: 337820
Number of successful extensions: 992
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top