ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl11d03 |
|---|---|
| Clone Library Name | barley_pub |
>RFNG_HUMAN (Q9Y644) Beta-1,3-N-acetylglucosaminyltransferase radical fringe| (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 331 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = +3 Query: 144 PLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARPRYYIF 284 P R P+L P + T RK P R I RAR + +IF Sbjct: 47 PSRPAAPSLRPDDVFIAVKTTRKNHGPRLRLLLRTWISRARQQTFIF 93
>XBP1_HUMAN (P17861) X box-binding protein 1 (XBP-1) (Tax-responsive| element-binding protein 5) Length = 261 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Frame = +2 Query: 20 ISLYIFSIFWGLRCRSSIPCW*FWKTMHLNCLFNMIP--IQDYSTALNNSSAYSISYRPN 193 IS +I ++ L+ +S I CW FW T +C N +P + + ++ ++ + Y+P Sbjct: 186 ISPWILAVLT-LQIQSLISCWAFWTTWTQSCSSNALPQSLPAWRSSQRSTQKDPVPYQPP 244 Query: 194 Y 196 + Sbjct: 245 F 245
>KI18A_HUMAN (Q8NI77) Kinesin family member 18A| Length = 898 Score = 29.6 bits (65), Expect = 1.9 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +3 Query: 162 PALIPSPTVLTTSTNRKRKQPATTNNT 242 P+++PS +TT+ RKRK ++T+N+ Sbjct: 814 PSMVPSYMAMTTAAKRKRKLTSSTSNS 840
>EDG3_MOUSE (Q9Z0U9) Sphingosine 1-phosphate receptor Edg-3 (S1P receptor| Edg-3) (Endothelial differentiation G-protein coupled receptor 3) (Sphingosine 1-phosphate receptor 3) (S1P3) (Lysophospholipid receptor B3) Length = 378 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Frame = -3 Query: 329 APTCSERRRWMERHAKDVVSRPCSLNHGSCV---VGCCWLFSFSV 204 A TCS +ERH + RP N V +G CWL +FS+ Sbjct: 125 ASTCSLLAIAIERHLTMIKMRPYDANKKHRVFLLIGMCWLIAFSL 169
>FA53B_HUMAN (Q14153) Protein FAM53B| Length = 422 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +3 Query: 144 PLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARP 269 P ++TPA P ++ +R R QP N+ + ++R RP Sbjct: 244 PSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRP 285
>POLN_EEVVC (Q8V294) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2496 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 305 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 216 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVT (P27282) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2492 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 305 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 216 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVP (P36328) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2492 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 305 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 216 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVV3 (P36327) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2485 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 305 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 216 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVM (Q9WJC7) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2498 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 305 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 216 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>MAP4_HUMAN (P27816) Microtubule-associated protein 4 (MAP 4)| Length = 1152 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Frame = +3 Query: 111 AYLI*SRYKITPLRS---TTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARPR 272 A ++ SR K TP+ S TTP + PT S+ R TN + P ++ R + Sbjct: 882 AGVVPSRVKATPMPSRPSTTPFIDKKPTSAKPSSTTPRLSRLATNTSAPDLKNVRSK 938
>IBMP_CERV (P05401) Inclusion body matrix protein (Viroplasmin)| Length = 496 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +2 Query: 53 LRCRSSIPCW*FWKTMHLNCLFNMIPIQDYSTALNNSSAYSISYRPNY 196 L+ +S+IPCW +DY L++S +SYRPNY Sbjct: 332 LKIKSTIPCW-----------------EDYYNGLDDS----VSYRPNY 358
>POLN_EEEVF (Q4QXJ8) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2493 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = -3 Query: 338 PIMAPTCSERRRWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 216 P++A S RW H D+ + + S V+GCCW F Sbjct: 383 PVVAQAFS---RWAREHRADLEDEKGLGVRERSLVMGCCWAF 421
>GLMS_SYNEL (Q8DJI6) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 625 Score = 28.5 bits (62), Expect = 4.3 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 19/82 (23%) Frame = +3 Query: 153 STTPALIP----------------SPT---VLTTSTNRKRKQPATTNNTRPMIERARPRY 275 S TPA+IP +PT V +R RK P T N M+E+ ++ Sbjct: 195 SDTPAIIPYTRAVLPLENGELARLTPTGVEVYDFEGHRLRKTPRTLNWNPVMVEKQGFKH 254 Query: 276 YIFGMSFHPPSSFRTCRCHYRR 341 Y+ + P R C +Y R Sbjct: 255 YMLKEIYEQPGVVRACLENYLR 276
>EDG3_HUMAN (Q99500) Sphingosine 1-phosphate receptor Edg-3 (S1P receptor| Edg-3) (Endothelial differentiation G-protein coupled receptor 3) (Sphingosine 1-phosphate receptor 3) (S1P3) Length = 378 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Frame = -3 Query: 329 APTCSERRRWMERHAKDVVSRPCSLNHGSCV---VGCCWLFSFSV 204 A TCS +ERH + RP N V +G CWL +F++ Sbjct: 124 ASTCSLLAIAIERHLTMIKMRPYDANKRHRVFLLIGMCWLIAFTL 168
>MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupled receptor 50)| (H9) Length = 613 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = +3 Query: 147 LRSTTPALIPSPTVLTTSTN 206 L S T A +P PTV+TTSTN Sbjct: 575 LESDTIADLPDPTVVTTSTN 594
>PET_ECOLI (O68900) Serine protease pet precursor (EC 3.4.21.-)| (Plasmid-encoded toxin pet) Length = 1295 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +2 Query: 116 FNMIPIQDYSTALNNSSAYSI--SYRPNYEYEQKKKTASNNQQH 241 F +P+ D+S+A N +A SI +Y + K K+++N Q + Sbjct: 94 FPALPVPDFSSATANGAATSIGGAYAVTVAHNAKNKSSANYQTY 137
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +3 Query: 141 TPLRSTTPALIPSPTVLTTSTNRKRKQPATTNNT 242 T STTP +PT TTST + +TT T Sbjct: 218 TSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTPTT 251
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 27.7 bits (60), Expect = 7.3 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -2 Query: 240 CCWLLLAVFFFCS 202 CCW+L + F FCS Sbjct: 3650 CCWILASTFLFCS 3662
>FA53B_MOUSE (Q8BGR5) Protein FAM53B| Length = 422 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +3 Query: 144 PLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARP 269 P ++TPA P ++ R R QP N+ + ++R RP Sbjct: 245 PSANSTPASTPELARRSSGLARSRSQPCVLNDKKIGVKRRRP 286
>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7176 Score = 27.7 bits (60), Expect = 7.3 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -2 Query: 240 CCWLLLAVFFFCS 202 CCW+L + F FCS Sbjct: 3646 CCWILASTFLFCS 3658
>ZN646_HUMAN (O15015) Zinc finger protein 646| Length = 1829 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = +3 Query: 162 PALIPSPTVLTTSTNRKRKQPATTNNTRP 248 P++ P+P +L +T+++ + P TT + RP Sbjct: 436 PSVPPAPLLLAETTHKEEEDPTTTLDHRP 464
>GUNA_CALSA (P22534) Endoglucanase A precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase A) (Cellulase A) Length = 1742 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = +3 Query: 141 TPLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMI 254 TP + TP P+PTV T T P T + P + Sbjct: 654 TPTPTATPTPTPTPTVTPTPTVTATPTPTPTPTSTPTV 691
>AT7L1_HUMAN (Q9ULK2) Ataxin-7-like protein 1 (Fragment)| Length = 864 Score = 27.3 bits (59), Expect = 9.5 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Frame = +3 Query: 126 SRYKITPLRSTTPALIPS----PTVLTTSTNRKRKQPATTNNTRPMIERARPRYYIFGMS 293 S +K S PA+IPS P+ TS + K K +T ++ P ++ +P+ S Sbjct: 599 STFKAPSAVSPIPAVIPSPSHKPSKTKTSKSSKVKDLSTRSDESPSNKKRKPQSSTSSSS 658 Query: 294 FHPPSSFRT 320 SS +T Sbjct: 659 SSSSSSLQT 667
>NFASC_CHICK (O42414) Neurofascin precursor| Length = 1369 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +3 Query: 141 TPLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERA 263 TP T P IP+ + TT+T +T +T ERA Sbjct: 1081 TPTTETPPTEIPTTAIPTTTTTTTTTAASTVASTTTTAERA 1121
>TENA_HUMAN (P24821) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)| (Neuronectin) (GMEM) (JI) (Miotendinous antigen) (Glioma-associated-extracellular matrix antigen) (GP 150-225) (Tenascin-C) (TN-C) Length = 2201 Score = 27.3 bits (59), Expect = 9.5 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -3 Query: 287 AKDVVSRPCSLNHGSCVVGCC 225 ++++ PCS HG+CV G C Sbjct: 248 SREICPVPCSEEHGTCVDGLC 268
>BAG3_HUMAN (O95817) BAG family molecular chaperone regulator 3 (BCL-2-binding| athanogene-3) (BAG-3) (Bcl-2-binding protein Bis) (Docking protein CAIR-1) Length = 575 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +3 Query: 141 TPLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPM 251 +P RS+TP PSP + T +R +QP T T P+ Sbjct: 279 SPARSSTPLHSPSPIRVHTVVDRP-QQPMTHRETAPV 314 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,558,764 Number of Sequences: 219361 Number of extensions: 923673 Number of successful extensions: 3159 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2854 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3127 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
