Clone Name | rbastl11d03 |
---|---|
Clone Library Name | barley_pub |
>gb|AC005885.1| Homo sapiens 12q24.2 PAC RPCI5-1135M4 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 84780 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Minus Query: 24 gtctttatatatttagcattttt 46 ||||||||||||||||||||||| Sbjct: 22255 gtctttatatatttagcattttt 22233
>gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (NPH1-2) mRNA, complete cds Length = 3422 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Minus Query: 169 ttattccatctcctaccgtccta 191 ||||||||||||||||||||||| Sbjct: 3238 ttattccatctcctaccgtccta 3216
>emb|CT025556.12| Mouse DNA sequence from clone RP24-91G8 on chromosome 13, complete sequence Length = 225239 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 23 agtctttatatatttagcattt 44 |||||||||||||||||||||| Sbjct: 67476 agtctttatatatttagcattt 67497
>gb|AC172863.1| Brassica rapa subsp. pekinensis clone KBrB070M24, complete sequence Length = 97697 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 23 agtctttatatatttagcattttttg 48 |||||||||||||||| ||||||||| Sbjct: 59646 agtctttatatatttaacattttttg 59671
>gb|AC099596.6| Mus musculus chromosome 15, clone RP23-26P23, complete sequence Length = 210022 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 tttataagtctttatatattt 37 ||||||||||||||||||||| Sbjct: 118084 tttataagtctttatatattt 118064
>gb|AC121783.2| Mus musculus BAC clone RP23-370I9 from 18, complete sequence Length = 184366 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 agcatcccctgctggtaattttgga 92 ||||||||||||||||| ||||||| Sbjct: 55468 agcatcccctgctggtagttttgga 55492
>emb|AL162419.34| Human DNA sequence from clone RP11-358M14 on chromosome 9 Contains the 5' end of a variant of a novel gene (FLJ90578) and a CpG island, complete sequence Length = 174535 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 catcttaattgcttatttaat 121 ||||||||||||||||||||| Sbjct: 122288 catcttaattgcttatttaat 122308
>emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 on chromosome 20p12.3-13 Contains STS and GSSs, complete sequence Length = 137739 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 277 acatctttggcatgtctttcc 297 ||||||||||||||||||||| Sbjct: 48566 acatctttggcatgtctttcc 48546
>emb|BX914217.19| Zebrafish DNA sequence from clone DKEY-175H14 in linkage group 18, complete sequence Length = 133981 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 tttatatatttagcatttttt 47 ||||||||||||||||||||| Sbjct: 118169 tttatatatttagcatttttt 118189
>dbj|AK086249.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930016E21 product:unclassifiable, full insert sequence Length = 2158 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 tttataagtctttatatattt 37 ||||||||||||||||||||| Sbjct: 482 tttataagtctttatatattt 462
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 tttccatccaccttcttcgtt 313 ||||||||||||||||||||| Sbjct: 9757635 tttccatccaccttcttcgtt 9757615
>dbj|AP005863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0040N23 Length = 101061 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 tttccatccaccttcttcgtt 313 ||||||||||||||||||||| Sbjct: 30054 tttccatccaccttcttcgtt 30034
>emb|CR974469.7| Zebrafish DNA sequence from clone CH73-64N5 in linkage group 22, complete sequence Length = 105360 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 tctttatatatttagcatttt 45 ||||||||||||||||||||| Sbjct: 10162 tctttatatatttagcatttt 10142
>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds Length = 3467 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 304 cttcttcgttcagaacatgtcggtg 328 ||||||| ||||||||||||||||| Sbjct: 3184 cttcttcattcagaacatgtcggtg 3160
>gb|AC089994.2| Felis catus clone RP86-181L4, complete sequence Length = 142512 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aacagaaaaagaaaacagcc 223 |||||||||||||||||||| Sbjct: 34995 aacagaaaaagaaaacagcc 35014
>gb|AC112143.5| Mus musculus BAC clone RP23-29E2 from chromosome 2, complete sequence Length = 205920 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 tgtctttccatccaccttct 308 |||||||||||||||||||| Sbjct: 153552 tgtctttccatccaccttct 153571
>gb|AC120138.9| Mus musculus chromosome 1, clone RP23-283D3, complete sequence Length = 216381 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tttatatatttagcattttt 46 |||||||||||||||||||| Sbjct: 162635 tttatatatttagcattttt 162616
>emb|AL391817.18| Human DNA sequence from clone RP11-91B9 on chromosome 1 Contains the PRELP gene for proline arginine-rich end leucine-rich repeat protein and the OPTC gene for opticin, complete sequence Length = 162436 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 cagaaaaagaaaacagccag 225 |||||||||||||||||||| Sbjct: 84244 cagaaaaagaaaacagccag 84225
>ref|XM_502169.1| Yarrowia lipolytica CLIB122, YALI0C23188g predicted mRNA Length = 789 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 ttgccgctccagcatcccctgctg 81 ||||| |||||||||||||||||| Sbjct: 592 ttgcctctccagcatcccctgctg 569
>emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on chromosome 1 Contains the gene for calcium/calmodulin-dependent protein kinase II (CaMKIINalpha), the gene for a novel protein (FLJ12875), a ribosomal protein S4 X-linked (RPS4X) pseudogene, the CDA gene for cytidine deaminase, the PINK1 gene for PTEN induced putative kinase 1, a novel gene (FLJ00387), the DDOST gene for dolichyl-diphosphooligosaccharide-protein glycosyltransferase and the 3' end of the KIF17 gene for kinesin family member 17, complete sequence Length = 195076 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 209 aaaaagaaaacagccagcaacaac 232 ||||||||||||||||||| |||| Sbjct: 58562 aaaaagaaaacagccagcaccaac 58585
>emb|AL354798.13| Human DNA sequence from clone RP11-756A22 on chromosome 13 Contains the 3' end of a novel gene, the CENJP gene for centromere protein J (LAP, CPAP, LIP1, BM032), 2 novel genes, a pseudogene similar to part of solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (SLC25A15), a TPTE and PTEN homologous inositol lipid phosphatase (TPIP) pseudogene, a 60S ribisomal protein L34 (RPL34) pseudogene and 2 CpG islands, complete sequence Length = 167319 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aacagaaaaagaaaacagcc 223 |||||||||||||||||||| Sbjct: 131042 aacagaaaaagaaaacagcc 131061
>emb|AL136305.14| Human DNA sequence from clone RP1-259A10 on chromosome 6p22.1-23 Contains the gene for an ssDNA binding protein and a CpG island, complete sequence Length = 150520 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 12 aaccctttataagtctttatatatttag 39 |||| ||| ||||||||||||||||||| Sbjct: 54958 aaccatttgtaagtctttatatatttag 54931
>gb|AC158151.4| Mus musculus chromosome 1, clone RP24-315B17, complete sequence Length = 184935 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tttatatatttagcattttt 46 |||||||||||||||||||| Sbjct: 155219 tttatatatttagcattttt 155238
>gb|AC133796.2| Homo sapiens 3 BAC RP11-10I2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125170 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ctttataagtctttatatat 35 |||||||||||||||||||| Sbjct: 38145 ctttataagtctttatatat 38126
>gb|AC087358.9| Homo sapiens chromosome 8, clone RP11-442A17, complete sequence Length = 183097 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 agccagcaacaaccaacaac 239 |||||||||||||||||||| Sbjct: 36825 agccagcaacaaccaacaac 36844
>emb|CR388403.8| Zebrafish DNA sequence from clone CH211-153C18 in linkage group 2, complete sequence Length = 159100 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tttccatccaccttcttcgt 312 |||||||||||||||||||| Sbjct: 74413 tttccatccaccttcttcgt 74394
>gb|AC091554.5| Homo sapiens chromosome 8, clone RP11-155P23, complete sequence Length = 149318 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 agccagcaacaaccaacaac 239 |||||||||||||||||||| Sbjct: 101530 agccagcaacaaccaacaac 101549
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 tttatatatttagcattttttggg 50 ||||||||||||| |||||||||| Sbjct: 9511200 tttatatatttaggattttttggg 9511177
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 tttatatatttagcattttttggg 50 ||||||||||||| |||||||||| Sbjct: 20195463 tttatatatttaggattttttggg 20195440
>gb|AC008750.9| Homo sapiens chromosome 19 clone CTD-2616J11, complete sequence Length = 143045 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tatatatttagcattttttg 48 |||||||||||||||||||| Sbjct: 16769 tatatatttagcattttttg 16788
>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence Length = 163597 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 292 ctttccatccaccttcttcgttca 315 ||||||||||||||||||| |||| Sbjct: 138198 ctttccatccaccttcttctttca 138221
>gb|AC068874.21| Homo sapiens chromosome 17, clone RP11-399J11, complete sequence Length = 174914 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 292 ctttccatccaccttcttcgttca 315 ||||||||||||||||||| |||| Sbjct: 165479 ctttccatccaccttcttctttca 165456
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0007G12 Length = 111819 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 tttatatatttagcattttttggg 50 ||||||||||||| |||||||||| Sbjct: 61463 tttatatatttaggattttttggg 61440
>dbj|AP005466.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1212_H09 Length = 129040 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 tttatatatttagcattttttggg 50 ||||||||||||| |||||||||| Sbjct: 8973 tttatatatttaggattttttggg 8950
>dbj|AP006465.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1059D01 Length = 158792 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 tttatatatttagcattttttggg 50 ||||||||||||| |||||||||| Sbjct: 18930 tttatatatttaggattttttggg 18907
>dbj|AP006447.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1100H02 Length = 128773 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 tttatatatttagcattttttggg 50 ||||||||||||| |||||||||| Sbjct: 93186 tttatatatttaggattttttggg 93163
>emb|AL928537.12| Mouse DNA sequence from clone RP23-236E7 on chromosome 2, complete sequence Length = 190808 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 tgtctttccatccaccttct 308 |||||||||||||||||||| Sbjct: 4345 tgtctttccatccaccttct 4364
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 gtctttccatccaccttctt 309 |||||||||||||||||||| Sbjct: 1407362 gtctttccatccaccttctt 1407343
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 ttgccgctccagcatcccctgctg 81 ||||| |||||||||||||||||| Sbjct: 3110576 ttgcctctccagcatcccctgctg 3110553
>gb|AC133110.2| Homo sapiens BAC clone RP11-761N10 from 4, complete sequence Length = 59902 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 agaaaaagaaaacagccagc 226 |||||||||||||||||||| Sbjct: 41012 agaaaaagaaaacagccagc 41031
>gb|M91082.1|CULLINERTD Culex pipiens LINE repeat (Juan-C retroposon) encoding DNA-binding protein and reverse transcriptase genes, complete cds Length = 4679 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aacagaaaaagaaaacagcc 223 |||||||||||||||||||| Sbjct: 426 aacagaaaaagaaaacagcc 445 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,014,651 Number of Sequences: 3902068 Number of extensions: 4014651 Number of successful extensions: 93806 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93598 Number of HSP's gapped (non-prelim): 208 length of query: 349 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 327 effective length of database: 17,147,199,772 effective search space: 5607134325444 effective search space used: 5607134325444 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)