ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl11d02 |
|---|---|
| Clone Library Name | barley_pub |
>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome| non-ATPase subunit 1) Length = 992 Score = 51.2 bits (121), Expect = 1e-06 Identities = 23/33 (69%), Positives = 27/33 (81%) Frame = -1 Query: 417 GERAELATDKYIPLTSTLEGFVVLKKNPEYHEE 319 GERAEL TD+YI TS +EG V+LKKNP+Y EE Sbjct: 959 GERAELETDEYISYTSHIEGVVILKKNPDYREE 991
>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) Length = 908 Score = 50.1 bits (118), Expect = 2e-06 Identities = 21/32 (65%), Positives = 28/32 (87%) Frame = -1 Query: 423 AAGERAELATDKYIPLTSTLEGFVVLKKNPEY 328 A GERAELAT++++P+T LEGFV+L+KNP Y Sbjct: 875 AHGERAELATEEFLPVTPILEGFVILRKNPNY 906
>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) (Tumor necrosis factor type 1 receptor-associated protein 2) (55.11 protein) Length = 908 Score = 50.1 bits (118), Expect = 2e-06 Identities = 21/32 (65%), Positives = 28/32 (87%) Frame = -1 Query: 423 AAGERAELATDKYIPLTSTLEGFVVLKKNPEY 328 A GERAELAT++++P+T LEGFV+L+KNP Y Sbjct: 875 AHGERAELATEEFLPVTPILEGFVILRKNPNY 906
>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1| Length = 883 Score = 47.4 bits (111), Expect = 1e-05 Identities = 21/33 (63%), Positives = 27/33 (81%) Frame = -1 Query: 417 GERAELATDKYIPLTSTLEGFVVLKKNPEYHEE 319 GERAEL D+YI L+STLEG V+L+KNP++ E Sbjct: 850 GERAELEDDQYISLSSTLEGLVILRKNPDWEGE 882
>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1| Length = 983 Score = 46.6 bits (109), Expect = 2e-05 Identities = 20/33 (60%), Positives = 25/33 (75%) Frame = -1 Query: 417 GERAELATDKYIPLTSTLEGFVVLKKNPEYHEE 319 GERAEL D+YI T+ +EG V+LKKNP + EE Sbjct: 950 GERAELENDEYISYTNNIEGVVILKKNPNFQEE 982
>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome| non-ATPase subunit mts4) (19S regulatory cap region of 26S protease subunit 2) Length = 891 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/28 (75%), Positives = 23/28 (82%) Frame = -1 Query: 414 ERAELATDKYIPLTSTLEGFVVLKKNPE 331 ERAELAT+ Y PLTS LEG V+LKKN E Sbjct: 859 ERAELATEAYTPLTS-LEGIVILKKNTE 885
>GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 634 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -2 Query: 152 CN*LQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLICICI 27 CN +S LV D TH+G +GV SF +L+C+ + Sbjct: 387 CNGARSTLVRESDA-VLLTHAGSEIGVASTKSFTTQLVCLLV 427
>KR195_HUMAN (Q3LI72) Keratin-associated protein 19-5| Length = 72 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +2 Query: 236 DDNLYLRACHAGELQKLASDQSLGGFPHSSWYSGFFFRTTKPS 364 DD Y C G ++L GG+ + S + G+ +R+ +PS Sbjct: 19 DDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPS 61
>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor| Length = 1700 Score = 29.3 bits (64), Expect = 3.9 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +3 Query: 339 SSSELQSPPTWRSGECTCQSPILLAPP 419 + + SP TW C+CQ P + PP Sbjct: 1391 AQKKCDSPKTWDENSCSCQCPKNMRPP 1417
>DNAK_ANAVT (O05714) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 688 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 213 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 335 E+++ S E M G++K+L + K G+ PRGIP Sbjct: 425 ENNQNSVEIHVVQGEREMAGDNKSLGRFKLYGIPPAPRGIP 465
>DNAK1_ANASP (Q9ZEJ6) Chaperone protein dnaK1 (Heat shock protein 70-1) (Heat| shock 70 kDa protein 1) (HSP70-1) Length = 688 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 213 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 335 E+++ S E M G++K+L + K G+ PRGIP Sbjct: 425 ENNQNSVEIHVVQGEREMAGDNKSLGRFKLYGIPPAPRGIP 465
>MURE_LISMO (Q8Y5L9) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 491 Score = 28.9 bits (63), Expect = 5.1 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 6/95 (6%) Frame = +3 Query: 9 NFQYTLDTYTNKLKVKRHHQFNSYMSTRVGTSGMPVHSGNQTRLQLVTA---LVDGIKMF 179 ++ +T++ Y N + NSY ++ + + R+Q TA + GIK Sbjct: 205 DYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGIKQE 264 Query: 180 LDEPPANAEV*EHSEGSSVTT---TFTSEHAMLGN 275 D +N ++ H + T FT + M+GN Sbjct: 265 ADFQASNIKITSHGSTFDLGTPVGNFTLKIKMIGN 299
>CATA_ASPFU (P78574) Catalase A (EC 1.11.1.6) (Fast catalase)| Length = 750 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 308 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 198 P + +MQ FGV ++ +G RH F + HLG+ Sbjct: 228 PRSYRMMQGFGVNTFALVNKEGKRHFVKFHWIPHLGV 264
>CATA_EMENI (P55305) Catalase A (EC 1.11.1.6) (Spore-specific catalase)| Length = 744 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 308 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 198 P + +MQ FGV ++ +G RH F + HLG+ Sbjct: 228 PRSYRMMQGFGVNTFSLVNKEGKRHFVKFHWIPHLGV 264
>LPQT_MYCLE (Q9CD47) Putative lipoprotein lpqT precursor| Length = 218 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = +3 Query: 231 SVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIPGSSSELQSPPTW 371 S TTT T+ + + L I G + P +PG + + +PP W Sbjct: 38 SSTTTTTTPDKPIPLPQYLESIGVTGQQVAPSSLPGLTVSIPTPPGW 84
>DNAK_CORJK (Q4JXX6) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 620 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/75 (24%), Positives = 33/75 (44%) Frame = +3 Query: 111 PVHSGNQTRLQLVTALVDGIKMFLDEPPANAEV*EHSEGSSVTTTFTSEHAMLGNSKNLH 290 P+ G +T+ ++T L++ + E S+ S F E M ++K L Sbjct: 370 PLSLGIETKGGVMTKLIERNTTIPTKRSETFTTAEDSQPSVQIQVFQGEREMAAHNKLLG 429 Query: 291 QIKA*GVSLTPRGIP 335 + G++ PRG+P Sbjct: 430 SFELAGIAPAPRGVP 444
>SALM_DROME (P39770) Homeotic protein spalt-major| Length = 1365 Score = 28.1 bits (61), Expect = 8.8 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Frame = +3 Query: 189 PPANAEV*EHSEGSSVTTTFTSEHAML-----GNSKNLHQIKA*GVSLTPRGIPGSSSEL 353 P ++A HS GS+ T S HA +S + + LTPR P SSS Sbjct: 1038 PRSSASSHGHSVGSTSAPTSPSVHASSQVIKRSSSPARSEASQGALDLTPRAAPTSSSSS 1097 Query: 354 QSP 362 +SP Sbjct: 1098 RSP 1100
>DNAK_PSESG (Q9WWG9) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/75 (22%), Positives = 31/75 (41%) Frame = +3 Query: 111 PVHSGNQTRLQLVTALVDGIKMFLDEPPANAEV*EHSEGSSVTTTFTSEHAMLGNSKNLH 290 P+ G + ++TAL+ FL P+ ++ E + E G +K+L Sbjct: 396 PLTLGIEAMGGVMTALIKKTPRFLPRNPSVLTADDNQENAVAIHVLQGERKQAGQNKSLG 455 Query: 291 QIKA*GVSLTPRGIP 335 + + PRG+P Sbjct: 456 KFDLAEIPPAPRGVP 470 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,327,672 Number of Sequences: 219361 Number of extensions: 1560162 Number of successful extensions: 4465 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4325 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4464 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
