ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Prot... 51 1e-06
2PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit... 50 2e-06
3PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit... 50 2e-06
4RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1 47 1e-05
5RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1 47 2e-05
6RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Prot... 40 0.002
7GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotrans... 31 1.4
8KR195_HUMAN (Q3LI72) Keratin-associated protein 19-5 30 1.8
9BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor 29 3.9
10DNAK_ANAVT (O05714) Chaperone protein dnaK (Heat shock protein 7... 29 5.1
11DNAK1_ANASP (Q9ZEJ6) Chaperone protein dnaK1 (Heat shock protein... 29 5.1
12MURE_LISMO (Q8Y5L9) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-... 29 5.1
13CATA_ASPFU (P78574) Catalase A (EC 1.11.1.6) (Fast catalase) 28 6.7
14CATA_EMENI (P55305) Catalase A (EC 1.11.1.6) (Spore-specific cat... 28 6.7
15LPQT_MYCLE (Q9CD47) Putative lipoprotein lpqT precursor 28 8.8
16DNAK_CORJK (Q4JXX6) Chaperone protein dnaK (Heat shock protein 7... 28 8.8
17SALM_DROME (P39770) Homeotic protein spalt-major 28 8.8
18DNAK_PSESG (Q9WWG9) Chaperone protein dnaK (Heat shock protein 7... 28 8.8

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
            non-ATPase subunit 1)
          Length = 992

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = -1

Query: 417  GERAELATDKYIPLTSTLEGFVVLKKNPEYHEE 319
            GERAEL TD+YI  TS +EG V+LKKNP+Y EE
Sbjct: 959  GERAELETDEYISYTSHIEGVVILKKNPDYREE 991



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>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 21/32 (65%), Positives = 28/32 (87%)
 Frame = -1

Query: 423 AAGERAELATDKYIPLTSTLEGFVVLKKNPEY 328
           A GERAELAT++++P+T  LEGFV+L+KNP Y
Sbjct: 875 AHGERAELATEEFLPVTPILEGFVILRKNPNY 906



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>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 21/32 (65%), Positives = 28/32 (87%)
 Frame = -1

Query: 423 AAGERAELATDKYIPLTSTLEGFVVLKKNPEY 328
           A GERAELAT++++P+T  LEGFV+L+KNP Y
Sbjct: 875 AHGERAELATEEFLPVTPILEGFVILRKNPNY 906



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>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = -1

Query: 417 GERAELATDKYIPLTSTLEGFVVLKKNPEYHEE 319
           GERAEL  D+YI L+STLEG V+L+KNP++  E
Sbjct: 850 GERAELEDDQYISLSSTLEGLVILRKNPDWEGE 882



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>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = -1

Query: 417  GERAELATDKYIPLTSTLEGFVVLKKNPEYHEE 319
            GERAEL  D+YI  T+ +EG V+LKKNP + EE
Sbjct: 950  GERAELENDEYISYTNNIEGVVILKKNPNFQEE 982



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>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = -1

Query: 414 ERAELATDKYIPLTSTLEGFVVLKKNPE 331
           ERAELAT+ Y PLTS LEG V+LKKN E
Sbjct: 859 ERAELATEAYTPLTS-LEGIVILKKNTE 885



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>GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 634

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 152 CN*LQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLICICI 27
           CN  +S LV   D     TH+G  +GV    SF  +L+C+ +
Sbjct: 387 CNGARSTLVRESDA-VLLTHAGSEIGVASTKSFTTQLVCLLV 427



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>KR195_HUMAN (Q3LI72) Keratin-associated protein 19-5|
          Length = 72

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 236 DDNLYLRACHAGELQKLASDQSLGGFPHSSWYSGFFFRTTKPS 364
           DD  Y   C  G  ++L      GG+ + S + G+ +R+ +PS
Sbjct: 19  DDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPS 61



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>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor|
          Length = 1700

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 339  SSSELQSPPTWRSGECTCQSPILLAPP 419
            +  +  SP TW    C+CQ P  + PP
Sbjct: 1391 AQKKCDSPKTWDENSCSCQCPKNMRPP 1417



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>DNAK_ANAVT (O05714) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 688

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 213 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 335
           E+++ S        E  M G++K+L + K  G+   PRGIP
Sbjct: 425 ENNQNSVEIHVVQGEREMAGDNKSLGRFKLYGIPPAPRGIP 465



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>DNAK1_ANASP (Q9ZEJ6) Chaperone protein dnaK1 (Heat shock protein 70-1) (Heat|
           shock 70 kDa protein 1) (HSP70-1)
          Length = 688

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 213 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 335
           E+++ S        E  M G++K+L + K  G+   PRGIP
Sbjct: 425 ENNQNSVEIHVVQGEREMAGDNKSLGRFKLYGIPPAPRGIP 465



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>MURE_LISMO (Q8Y5L9) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 491

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
 Frame = +3

Query: 9   NFQYTLDTYTNKLKVKRHHQFNSYMSTRVGTSGMPVHSGNQTRLQLVTA---LVDGIKMF 179
           ++ +T++ Y N   +      NSY ++    + +        R+Q  TA   +  GIK  
Sbjct: 205 DYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGIKQE 264

Query: 180 LDEPPANAEV*EHSEGSSVTT---TFTSEHAMLGN 275
            D   +N ++  H     + T    FT +  M+GN
Sbjct: 265 ADFQASNIKITSHGSTFDLGTPVGNFTLKIKMIGN 299



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>CATA_ASPFU (P78574) Catalase A (EC 1.11.1.6) (Fast catalase)|
          Length = 750

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 308 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 198
           P  + +MQ FGV    ++  +G RH   F  + HLG+
Sbjct: 228 PRSYRMMQGFGVNTFALVNKEGKRHFVKFHWIPHLGV 264



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>CATA_EMENI (P55305) Catalase A (EC 1.11.1.6) (Spore-specific catalase)|
          Length = 744

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 308 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 198
           P  + +MQ FGV    ++  +G RH   F  + HLG+
Sbjct: 228 PRSYRMMQGFGVNTFSLVNKEGKRHFVKFHWIPHLGV 264



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>LPQT_MYCLE (Q9CD47) Putative lipoprotein lpqT precursor|
          Length = 218

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 231 SVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIPGSSSELQSPPTW 371
           S TTT T+    +   + L  I   G  + P  +PG +  + +PP W
Sbjct: 38  SSTTTTTTPDKPIPLPQYLESIGVTGQQVAPSSLPGLTVSIPTPPGW 84



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>DNAK_CORJK (Q4JXX6) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 620

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = +3

Query: 111 PVHSGNQTRLQLVTALVDGIKMFLDEPPANAEV*EHSEGSSVTTTFTSEHAMLGNSKNLH 290
           P+  G +T+  ++T L++       +        E S+ S     F  E  M  ++K L 
Sbjct: 370 PLSLGIETKGGVMTKLIERNTTIPTKRSETFTTAEDSQPSVQIQVFQGEREMAAHNKLLG 429

Query: 291 QIKA*GVSLTPRGIP 335
             +  G++  PRG+P
Sbjct: 430 SFELAGIAPAPRGVP 444



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>SALM_DROME (P39770) Homeotic protein spalt-major|
          Length = 1365

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = +3

Query: 189  PPANAEV*EHSEGSSVTTTFTSEHAML-----GNSKNLHQIKA*GVSLTPRGIPGSSSEL 353
            P ++A    HS GS+   T  S HA        +S    +     + LTPR  P SSS  
Sbjct: 1038 PRSSASSHGHSVGSTSAPTSPSVHASSQVIKRSSSPARSEASQGALDLTPRAAPTSSSSS 1097

Query: 354  QSP 362
            +SP
Sbjct: 1098 RSP 1100



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>DNAK_PSESG (Q9WWG9) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 638

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/75 (22%), Positives = 31/75 (41%)
 Frame = +3

Query: 111 PVHSGNQTRLQLVTALVDGIKMFLDEPPANAEV*EHSEGSSVTTTFTSEHAMLGNSKNLH 290
           P+  G +    ++TAL+     FL   P+     ++ E +        E    G +K+L 
Sbjct: 396 PLTLGIEAMGGVMTALIKKTPRFLPRNPSVLTADDNQENAVAIHVLQGERKQAGQNKSLG 455

Query: 291 QIKA*GVSLTPRGIP 335
           +     +   PRG+P
Sbjct: 456 KFDLAEIPPAPRGVP 470


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,327,672
Number of Sequences: 219361
Number of extensions: 1560162
Number of successful extensions: 4465
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4464
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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