ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
2dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
3dbj|AK121684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
4ref|NM_188008.1| Oryza sativa (japonica cultivar-group), Ozsa842... 58 2e-05
5emb|CR848813.6| Zebrafish DNA sequence from clone DKEY-260J20 in... 48 0.021
6emb|AL162494.10| Human DNA sequence from clone RP11-417I19 on ch... 44 0.33
7emb|BX571698.15| Zebrafish DNA sequence from clone DKEYP-121E10 ... 44 0.33
8gb|AC099009.2| Drosophila melanogaster clone BACR17M11, complete... 42 1.3
9ref|XM_595992.2| PREDICTED: Bos taurus similar to Receptor-type ... 42 1.3
10emb|CR956613.2|RP43043M20 Pan troglodytes chromosome X BAC RP43-... 42 1.3
11emb|CR931763.8| Zebrafish DNA sequence from clone DKEY-65B12 in ... 42 1.3
12gb|AF406703.1| Solanum tuberosum BEL1-related homeotic protein 3... 42 1.3
13emb|AL109932.15|HSDJ770C6 Human DNA sequence from clone RP4-770C... 42 1.3
14emb|AL109609.5|HSJ556A22 Human DNA sequence from clone RP4-556A2... 42 1.3
15emb|AL132978.1|ATF3A4 Arabidopsis thaliana DNA chromosome 3, BAC... 42 1.3
16emb|BX537827.1|HSM805921 Homo sapiens genomic DNA; cDNA DKFZp686... 42 1.3
17gb|AC100852.2| Homo sapiens chromosome 17, clone RP11-125C16, co... 42 1.3
18tpg|BK003690.1| TPA: TPA_inf: Drosophila melanogaster HDC05448 (... 42 1.3
19gb|AC006472.2|AC006472 Drosophila melanogaster, chromosome 2R, r... 42 1.3
20gb|AE003832.4| Drosophila melanogaster chromosome 2R, section 18... 42 1.3
21gb|AC005894.1|AC005894 Drosophila melanogaster, chromosome 2R, r... 42 1.3
22gb|DQ316259.1| Homo sapiens nemo like kinase (NLK) gene, complet... 42 1.3
23gb|AC110907.7| Mus musculus chromosome 7, clone RP24-180J10, com... 40 5.2
24ref|XM_636878.1| Dictyostelium discoideum C3HC4 type Zn finger-c... 40 5.2
25gb|AC112151.3| Mus musculus BAC clone RP24-86M8 from 2, complete... 40 5.2
26gb|AC117624.10| Mus musculus chromosome 8, clone RP23-114M9, com... 40 5.2
27gb|AC159166.4| Atelerix albiventris clone LB4-482N5, complete se... 40 5.2
28gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, co... 40 5.2
29gb|AC015802.21| Homo sapiens chromosome 17, clone RP11-666A8, co... 40 5.2
30emb|BX510369.6| Zebrafish DNA sequence from clone CH211-126I22 i... 40 5.2
31dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 40 5.2
32emb|AL935170.11| Mouse DNA sequence from clone RP23-480P16 on ch... 40 5.2
33emb|AL954869.9| Mouse DNA sequence from clone RP23-477I13 on chr... 40 5.2
34emb|BX004855.10| Mouse DNA sequence from clone RP23-216P21 on ch... 40 5.2 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 129/156 (82%), Gaps = 12/156 (7%)
 Strand = Plus / Minus

                                                                           
Query: 157     gcaggggagagcaaaatctgcacagggacgagtctactcaaatcctta--gtttacacca 214
               |||||||||| |||||||||||||||     |||||||||||||||||   ||| |||||
Sbjct: 9082615 gcaggggagaacaaaatctgcacaggt----gtctactcaaatccttaagtttttcacca 9082560

                                                                           
Query: 215     aacaaaaacg---ttgctactttctcc--tctgtaggatcgccaccaaaatttcatagcc 269
               ||||||||||   ||||||||||||||  | ||| ||||  ||||||||||||||| |||
Sbjct: 9082559 aacaaaaacggttttgctactttctcctttttgtgggatgaccaccaaaatttcat-gcc 9082501

                                                   
Query: 270     ctggtaatacctacttagcctcagcgttgttatggc 305
                || ||  |||||||| || ||||| ||||||||||
Sbjct: 9082500 atgctaggacctacttcgcatcagccttgttatggc 9082465



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                            
Query: 363     gtgccttgaaatcctcgatggttcggaac 391
               |||||||||||||||||||||||||||||
Sbjct: 9082416 gtgccttgaaatcctcgatggttcggaac 9082388



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 70      ttatctctatgtacaaatcccaca 93
               |||||| |||||||||||||||||
Sbjct: 9082715 ttatctttatgtacaaatcccaca 9082692
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>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0499C11
          Length = 151369

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 129/156 (82%), Gaps = 12/156 (7%)
 Strand = Plus / Minus

                                                                          
Query: 157    gcaggggagagcaaaatctgcacagggacgagtctactcaaatcctta--gtttacacca 214
              |||||||||| |||||||||||||||     |||||||||||||||||   ||| |||||
Sbjct: 111622 gcaggggagaacaaaatctgcacaggt----gtctactcaaatccttaagtttttcacca 111567

                                                                          
Query: 215    aacaaaaacg---ttgctactttctcc--tctgtaggatcgccaccaaaatttcatagcc 269
              ||||||||||   ||||||||||||||  | ||| ||||  ||||||||||||||| |||
Sbjct: 111566 aacaaaaacggttttgctactttctcctttttgtgggatgaccaccaaaatttcat-gcc 111508

                                                  
Query: 270    ctggtaatacctacttagcctcagcgttgttatggc 305
               || ||  |||||||| || ||||| ||||||||||
Sbjct: 111507 atgctaggacctacttcgcatcagccttgttatggc 111472



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                           
Query: 363    gtgccttgaaatcctcgatggttcggaac 391
              |||||||||||||||||||||||||||||
Sbjct: 111423 gtgccttgaaatcctcgatggttcggaac 111395



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 70     ttatctctatgtacaaatcccaca 93
              |||||| |||||||||||||||||
Sbjct: 111722 ttatctttatgtacaaatcccaca 111699
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>dbj|AK121684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070C16, full
            insert sequence
          Length = 3448

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 129/156 (82%), Gaps = 12/156 (7%)
 Strand = Plus / Minus

                                                                        
Query: 157  gcaggggagagcaaaatctgcacagggacgagtctactcaaatcctta--gtttacacca 214
            |||||||||| |||||||||||||||     |||||||||||||||||   ||| |||||
Sbjct: 3269 gcaggggagaacaaaatctgcacaggt----gtctactcaaatccttaagtttttcacca 3214

                                                                        
Query: 215  aacaaaaacg---ttgctactttctcc--tctgtaggatcgccaccaaaatttcatagcc 269
            ||||||||||   ||||||||||||||  | ||| ||||  ||||||||||||||| |||
Sbjct: 3213 aacaaaaacggttttgctactttctcctttttgtgggatgaccaccaaaatttcat-gcc 3155

                                                
Query: 270  ctggtaatacctacttagcctcagcgttgttatggc 305
             || ||  |||||||| || ||||| ||||||||||
Sbjct: 3154 atgctaggacctacttcgcatcagccttgttatggc 3119



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                         
Query: 363  gtgccttgaaatcctcgatggttcggaac 391
            |||||||||||||||||||||||||||||
Sbjct: 3070 gtgccttgaaatcctcgatggttcggaac 3042



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 70   ttatctctatgtacaaatcccaca 93
            |||||| |||||||||||||||||
Sbjct: 3369 ttatctttatgtacaaatcccaca 3346
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>ref|NM_188008.1| Oryza sativa (japonica cultivar-group), Ozsa8428 predicted mRNA
          Length = 2787

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                         
Query: 363  gtgccttgaaatcctcgatggttcggaac 391
            |||||||||||||||||||||||||||||
Sbjct: 2713 gtgccttgaaatcctcgatggttcggaac 2685
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>emb|CR848813.6| Zebrafish DNA sequence from clone DKEY-260J20 in linkage group 5,
              complete sequence
          Length = 206722

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 111    atgtagaaaaagaggagaaaatattcct 138
              ||||||||||||||||| ||||||||||
Sbjct: 180252 atgtagaaaaagaggaggaaatattcct 180225
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>emb|AL162494.10| Human DNA sequence from clone RP11-417I19 on chromosome 13, complete
             sequence
          Length = 77808

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 11    gaagacatcattatgtcttttt 32
             ||||||||||||||||||||||
Sbjct: 15524 gaagacatcattatgtcttttt 15545
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>emb|BX571698.15| Zebrafish DNA sequence from clone DKEYP-121E10 in linkage group 24,
             complete sequence
          Length = 168886

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 54    aataaaggcaattattttatct 75
             ||||||||||||||||||||||
Sbjct: 90667 aataaaggcaattattttatct 90688
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>gb|AC099009.2| Drosophila melanogaster clone BACR17M11, complete sequence
          Length = 188872

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 320   ctcttgctgctactaccgacg 340
             |||||||||||||||||||||
Sbjct: 32938 ctcttgctgctactaccgacg 32918
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>ref|XM_595992.2| PREDICTED: Bos taurus similar to Receptor-type tyrosine-protein
           phosphatase T precursor (R-PTP-T) (RPTP-rho)
           (LOC517815), mRNA
          Length = 1560

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 244 aggatcgccaccaaaatttca 264
           |||||||||||||||||||||
Sbjct: 205 aggatcgccaccaaaatttca 225
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>emb|CR956613.2|RP43043M20 Pan troglodytes chromosome X BAC RP43-043M20, complete sequence
          Length = 81986

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 52    ttaataaaggcaattatttta 72
             |||||||||||||||||||||
Sbjct: 37576 ttaataaaggcaattatttta 37596
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>emb|CR931763.8| Zebrafish DNA sequence from clone DKEY-65B12 in linkage group 5, complete
              sequence
          Length = 186739

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 111    atgtagaaaaagaggagaaaatatt 135
              ||||||||||||||||| |||||||
Sbjct: 154162 atgtagaaaaagaggaggaaatatt 154186
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>gb|AF406703.1| Solanum tuberosum BEL1-related homeotic protein 30 (Bel30) mRNA,
            complete cds
          Length = 2065

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 99   accatgaagctgatgtagaaa 119
            |||||||||||||||||||||
Sbjct: 1579 accatgaagctgatgtagaaa 1599
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>emb|AL109932.15|HSDJ770C6 Human DNA sequence from clone RP4-770C6 on chromosome 1, complete
             sequence
          Length = 99340

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    acatcattatgtctttttaac 35
             |||||||||||||||||||||
Sbjct: 46542 acatcattatgtctttttaac 46522
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>emb|AL109609.5|HSJ556A22 Human DNA sequence from clone RP4-556A22 on chromosome Xp21.1-21.3
             Contains part of the DMD gene for dystrophin (muscular
             dystrophy, Duchenne and Becker types), complete sequence
          Length = 109098

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 52    ttaataaaggcaattatttta 72
             |||||||||||||||||||||
Sbjct: 46685 ttaataaaggcaattatttta 46665
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>emb|AL132978.1|ATF3A4 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4
          Length = 108158

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    ttatgtctttttaactctata 41
             |||||||||||||||||||||
Sbjct: 51015 ttatgtctttttaactctata 50995
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>emb|BX537827.1|HSM805921 Homo sapiens genomic DNA; cDNA DKFZp686O13239 (from clone
           DKFZp686O13239)
          Length = 2517

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 15  acatcattatgtctttttaac 35
           |||||||||||||||||||||
Sbjct: 760 acatcattatgtctttttaac 780
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>gb|AC100852.2| Homo sapiens chromosome 17, clone RP11-125C16, complete sequence
          Length = 157980

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    aattattttatctctatgtac 83
             |||||||||||||||||||||
Sbjct: 20999 aattattttatctctatgtac 21019
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>tpg|BK003690.1| TPA: TPA_inf: Drosophila melanogaster HDC05448 (HDC05448) gene,
           complete cds
          Length = 1597

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 320 ctcttgctgctactaccgacg 340
           |||||||||||||||||||||
Sbjct: 62  ctcttgctgctactaccgacg 42
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>gb|AC006472.2|AC006472 Drosophila melanogaster, chromosome 2R, region 45E1-46A2, BAC clone
             BACR48G21, complete sequence
          Length = 156346

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 320   ctcttgctgctactaccgacg 340
             |||||||||||||||||||||
Sbjct: 11715 ctcttgctgctactaccgacg 11735
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>gb|AE003832.4| Drosophila melanogaster chromosome 2R, section 18 of 73 of the complete
             sequence
          Length = 242171

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 320   ctcttgctgctactaccgacg 340
             |||||||||||||||||||||
Sbjct: 31695 ctcttgctgctactaccgacg 31675
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>gb|AC005894.1|AC005894 Drosophila melanogaster, chromosome 2R, region 46A1-46B2, P1 clones
             DS00050, DS00191, and DS05369, complete sequence
          Length = 196337

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 320   ctcttgctgctactaccgacg 340
             |||||||||||||||||||||
Sbjct: 28361 ctcttgctgctactaccgacg 28341
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>gb|DQ316259.1| Homo sapiens nemo like kinase (NLK) gene, complete cds
          Length = 158034

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    aattattttatctctatgtac 83
             |||||||||||||||||||||
Sbjct: 14690 aattattttatctctatgtac 14710
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>gb|AC110907.7| Mus musculus chromosome 7, clone RP24-180J10, complete sequence
          Length = 179750

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    aattattttatctctatgta 82
             ||||||||||||||||||||
Sbjct: 34285 aattattttatctctatgta 34304
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>ref|XM_636878.1| Dictyostelium discoideum C3HC4 type Zn finger-containing protein
            (DDB0220664), partial mRNA
          Length = 2151

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  gaaaaagaggagaaaatatt 135
            ||||||||||||||||||||
Sbjct: 1435 gaaaaagaggagaaaatatt 1454
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>gb|AC112151.3| Mus musculus BAC clone RP24-86M8 from 2, complete sequence
          Length = 216515

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    aagaggagaaaatattcctg 139
              ||||||||||||||||||||
Sbjct: 100997 aagaggagaaaatattcctg 101016
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>gb|AC117624.10| Mus musculus chromosome 8, clone RP23-114M9, complete sequence
          Length = 207159

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    atagtttggctatttaataa 58
             ||||||||||||||||||||
Sbjct: 63981 atagtttggctatttaataa 63962
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>gb|AC159166.4| Atelerix albiventris clone LB4-482N5, complete sequence
          Length = 61580

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     atccaacaatgaagacatca 20
             ||||||||||||||||||||
Sbjct: 19074 atccaacaatgaagacatca 19093
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>gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, complete sequence
          Length = 219863

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     aattattttatctctatgta 82
              ||||||||||||||||||||
Sbjct: 197131 aattattttatctctatgta 197150
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>gb|AC015802.21| Homo sapiens chromosome 17, clone RP11-666A8, complete sequence
          Length = 205753

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   ggagagcaaaatctgcacag 181
             ||||||||||||||||||||
Sbjct: 30725 ggagagcaaaatctgcacag 30744
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>emb|BX510369.6| Zebrafish DNA sequence from clone CH211-126I22 in linkage group 10,
              complete sequence
          Length = 168142

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    tttacaccaaacaaaaacgt 225
              ||||||||||||||||||||
Sbjct: 135746 tttacaccaaacaaaaacgt 135727
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 15      acatcattatgtctttttaa 34
               ||||||||||||||||||||
Sbjct: 1572541 acatcattatgtctttttaa 1572560
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>emb|AL935170.11| Mouse DNA sequence from clone RP23-480P16 on chromosome 2, complete
             sequence
          Length = 181154

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   aagaggagaaaatattcctg 139
             ||||||||||||||||||||
Sbjct: 39642 aagaggagaaaatattcctg 39661
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>emb|AL954869.9| Mouse DNA sequence from clone RP23-477I13 on chromosome X, complete
             sequence
          Length = 159365

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    ttatctctatgtacaaatcc 89
             ||||||||||||||||||||
Sbjct: 11358 ttatctctatgtacaaatcc 11339
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>emb|BX004855.10| Mouse DNA sequence from clone RP23-216P21 on chromosome X, complete
             sequence
          Length = 64417

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   tagaaaaagaggagaaaata 133
             ||||||||||||||||||||
Sbjct: 49224 tagaaaaagaggagaaaata 49205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,061,249
Number of Sequences: 3902068
Number of extensions: 5061249
Number of successful extensions: 104915
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104782
Number of HSP's gapped (non-prelim): 124
length of query: 391
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 369
effective length of database: 17,147,199,772
effective search space: 6327316715868
effective search space used: 6327316715868
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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