ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl11c11 |
|---|---|
| Clone Library Name | barley_pub |
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 69.3 bits (168), Expect = 4e-12 Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 2/61 (3%) Frame = -3 Query: 438 PPAANASSG--LCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCP 265 P A + SG C+KC +PGH SR+CP YG S GG T CYKC + GH +RDCP Sbjct: 212 PSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRT--CYKCGEAGHISRDCP 269 Query: 264 A 262 + Sbjct: 270 S 270 Score = 64.7 bits (156), Expect = 1e-10 Identities = 34/80 (42%), Positives = 41/80 (51%), Gaps = 6/80 (7%) Frame = -3 Query: 423 ASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ----- 259 A + CF+C + GH SRDCP A P G A CYKC Q GH +RDCP+ Sbjct: 67 AGAMTCFRCGEAGHMSRDCPNSAKP------GAAKGFECYKCGQEGHLSRDCPSSQGGSR 120 Query: 258 -GVGQERQMYVNGAASGGYN 202 G GQ+R A GGY+ Sbjct: 121 GGYGQKRG---RSGAQGGYS 137 Score = 57.0 bits (136), Expect = 2e-08 Identities = 29/80 (36%), Positives = 40/80 (50%) Frame = -3 Query: 429 ANASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 + A C+KC + GH SR+CP GS+ G+ CYKC +PGH +R+CP G Sbjct: 191 SGAGDRKCYKCGESGHMSRECPSA----GSTGSGDR---ACYKCGKPGHISRECPEAGGS 243 Query: 249 QERQMYVNGAASGGYNRQSY 190 G + GG +R Y Sbjct: 244 Y-------GGSRGGGDRTCY 256 Score = 57.0 bits (136), Expect = 2e-08 Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 10/58 (17%) Frame = -3 Query: 408 CFKCNQPGHFSRDCP----------GQAAPYGSSVGGNANTGLCYKCNQPGHFARDCP 265 C+KC Q GH SRDCP GQ + GG + CYKC GH +RDCP Sbjct: 99 CYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCP 156 Score = 55.5 bits (132), Expect = 6e-08 Identities = 23/58 (39%), Positives = 29/58 (50%) Frame = -3 Query: 429 ANASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQG 256 + A C+KC GH SRDCP Y A CYKC + GH +R+CP+ G Sbjct: 163 SGAGDRTCYKCGDAGHISRDCPNGQGGYSG-----AGDRKCYKCGESGHMSRECPSAG 215 Score = 53.9 bits (128), Expect = 2e-07 Identities = 29/73 (39%), Positives = 33/73 (45%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQMYV 229 C+KC GH SRDCP Y A CYKC GH +RDCP GQ Sbjct: 142 CYKCGDAGHISRDCPNGQGGYSG-----AGDRTCYKCGDAGHISRDCPN---GQ------ 187 Query: 228 NGAASGGYNRQSY 190 G SG +R+ Y Sbjct: 188 -GGYSGAGDRKCY 199 Score = 44.7 bits (104), Expect = 1e-04 Identities = 17/52 (32%), Positives = 29/52 (55%) Frame = -3 Query: 420 SSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCP 265 SS C C + GH++R+CP + G+ + C++C + GH +R+CP Sbjct: 14 SSTSCRNCGKEGHYARECPEADSK------GDERSTTCFRCGEEGHMSRECP 59
>GRP2_NICSY (P27484) Glycine-rich protein 2| Length = 214 Score = 58.9 bits (141), Expect = 5e-09 Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = -3 Query: 408 CFKCNQPGHFSRDCP-----GQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQG 256 CFKC + GHF+RDC G +G GG G CYKC + GHFAR+C + G Sbjct: 159 CFKCGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGG-CYKCGEDGHFARECTSGG 213 Score = 41.6 bits (96), Expect = 9e-04 Identities = 20/52 (38%), Positives = 24/52 (46%) Frame = -3 Query: 363 GQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQMYVNGAASGG 208 G YG GG+ C+KC + GHFARDC G G + G GG Sbjct: 143 GGGGGYGG--GGSGGGSGCFKCGESGHFARDCSQSGGGGGGGRFGGGGGGGG 192 Score = 30.0 bits (66), Expect = 2.7 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDC 367 G C+KC + GHF+R+C Sbjct: 194 GGCYKCGEDGHFAREC 209
>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)| Length = 201 Score = 58.2 bits (139), Expect = 9e-09 Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 11/62 (17%) Frame = -3 Query: 408 CFKCNQPGHFSRDCP---------GQAAPYGSSVGGNANTG--LCYKCNQPGHFARDCPA 262 CFKC +PGH +R+C G YGS GG G CY C + GHFARDC + Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCTS 197 Query: 261 QG 256 G Sbjct: 198 GG 199 Score = 38.9 bits (89), Expect = 0.006 Identities = 17/43 (39%), Positives = 20/43 (46%) Frame = -3 Query: 333 GGNANTGLCYKCNQPGHFARDCPAQGVGQERQMYVNGAASGGY 205 GG C+KC +PGH AR+C G G Y G G Y Sbjct: 130 GGGGGDNSCFKCGEPGHMARECSQGGGG-----YSGGGGGGRY 167 Score = 29.3 bits (64), Expect = 4.5 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAA 352 C+ C + GHF+RDC A Sbjct: 182 CYSCGESGHFARDCTSGGA 200
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline| helicase 2) Length = 974 Score = 55.8 bits (133), Expect = 5e-08 Identities = 27/66 (40%), Positives = 32/66 (48%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQMYV 229 CF C QPGH S DCP V CY C QPGH +RDCP + +E + Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPRV--------CYNCQQPGHNSRDCPEERKPREGRNGF 310 Query: 228 NGAASG 211 G +SG Sbjct: 311 TGGSSG 316 Score = 55.5 bits (132), Expect = 6e-08 Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQE-RQMY 232 CF C QPGH S DCP V CY C QPGH +RDCP + +E R + Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRV--------CYNCQQPGHNSRDCPEERKPREGRNGF 424 Query: 231 VNG------AASGGYNRQSYVGS*VVWPITCF 154 +G GG N + + + P+ CF Sbjct: 425 TSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 24/81 (29%) Frame = -3 Query: 435 PAANASSGLCFKCNQPGHFSRDCPGQAAP------YGSSVGGNANTGL------------ 310 P +C+ C QPGH SRDCP + P + S GG + G Sbjct: 389 PKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNE 448 Query: 309 ------CYKCNQPGHFARDCP 265 C+ C GH + +CP Sbjct: 449 ERGPMKCFNCKGEGHRSAECP 469 Score = 42.0 bits (97), Expect = 7e-04 Identities = 32/135 (23%), Positives = 43/135 (31%), Gaps = 56/135 (41%) Frame = -3 Query: 435 PAANASSGLCFKCNQPGHFSRDCPGQAAP------------------------------- 349 P +C+ C QPGH SRDCP + P Sbjct: 275 PKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSGFGGGNGGGTGFDSGLTNG 334 Query: 348 YGS-----------SVGGNAN--------------TGLCYKCNQPGHFARDCPAQGVGQE 244 +GS GGN+N C+ C QPGH + DCP +E Sbjct: 335 FGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKERE 394 Query: 243 RQMYVNGAASGGYNR 199 ++ N G +R Sbjct: 395 PRVCYNCQQPGHNSR 409 Score = 34.3 bits (77), Expect = 0.14 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = -3 Query: 363 GQAAPYGSSVGGN---ANTGLCYKCNQPGHFARDCPAQGVGQERQMYVNGAASGGYNR 199 G + +GS GG C+ C QPGH + DCP +E ++ N G +R Sbjct: 238 GNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSR 295 Score = 30.8 bits (68), Expect = 1.6 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVG 331 CF C + GH S +CP A P + G Sbjct: 475 CFNCGEQGHRSNECPNPAKPREGAEG 500
>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog| Length = 179 Score = 51.6 bits (122), Expect = 9e-07 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = -3 Query: 438 PPAANASSGL-CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 P + N G C+KC + GH +RDC G GG+ + CY C GH ARDC Sbjct: 74 PSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131 Score = 46.6 bits (109), Expect = 3e-05 Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 6/78 (7%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQG------VGQ 247 C+ C GH RDCP P + CYKC + GH ARDC G G Sbjct: 60 CYACGTAGHLVRDCPSSPNPRQGAE--------CYKCGRVGHIARDCRTNGQQSGGRFGG 111 Query: 246 ERQMYVNGAASGGYNRQS 193 R +N A G Y Q+ Sbjct: 112 HRS-NMNCYACGSYGHQA 128 Score = 44.3 bits (103), Expect = 1e-04 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 8/55 (14%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGN-------ANTG-LCYKCNQPGHFARDC 268 C+ C GH +RDC Y G+ A+ G LCYKCNQPGH A +C Sbjct: 118 CYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172 Score = 39.3 bits (90), Expect = 0.004 Identities = 20/64 (31%), Positives = 27/64 (42%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQMYV 229 C+ C + GH +R+C +CY CNQ GH A +C QE+ Y Sbjct: 19 CYNCGENGHQAREC--------------TKGSICYNCNQTGHKASECTEP--QQEKTCYA 62 Query: 228 NGAA 217 G A Sbjct: 63 CGTA 66 Score = 32.3 bits (72), Expect = 0.54 Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%) Frame = -3 Query: 423 ASSG-LCFKCNQPGHFSRDC 367 AS G LC+KCNQPGH + +C Sbjct: 153 ASDGQLCYKCNQPGHIAVNC 172
>GIS2_YEAST (P53849) Zinc-finger protein GIS2| Length = 153 Score = 49.3 bits (116), Expect = 4e-06 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = -3 Query: 417 SGL-CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCP 265 SGL C+ C Q GH SRDC N LCY CN+ GH ++DCP Sbjct: 114 SGLKCYTCGQAGHMSRDCQ--------------NDRLCYNCNETGHISKDCP 151 Score = 48.1 bits (113), Expect = 9e-06 Identities = 22/47 (46%), Positives = 26/47 (55%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF CNQ GH SR+CP P +S + CYKC P H A+DC Sbjct: 67 CFNCNQTGHISRECP---EPKKTSRFSKVS---CYKCGGPNHMAKDC 107 Score = 45.8 bits (107), Expect = 5e-05 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 9/61 (14%) Frame = -3 Query: 420 SSGLCFKCNQPGHFSRDCP-------GQAAPYGSS--VGGNANTGLCYKCNQPGHFARDC 268 S LC+ CN+PGH DC Q G + V C+ CNQ GH +R+C Sbjct: 21 SERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQRCFNCNQTGHISREC 80 Query: 267 P 265 P Sbjct: 81 P 81 Score = 41.6 bits (96), Expect = 9e-04 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = -3 Query: 420 SSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQER 241 S C+ C + GH + DC + LCY CN+PGH DC + + Sbjct: 2 SQKACYVCGKIGHLAEDCDSER--------------LCYNCNKPGHVQTDCTMPRTVEFK 47 Query: 240 QMY 232 Q Y Sbjct: 48 QCY 50
>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 172 Score = 49.3 bits (116), Expect = 4e-06 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 9/63 (14%) Frame = -3 Query: 420 SSGLCFKCNQPGHFSRDCP-GQAAPYGSSVGGNAN--------TGLCYKCNQPGHFARDC 268 SS CFKC + GH++R+CP G G G A +CY+C + GH A+DC Sbjct: 2 SSNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC 61 Query: 267 PAQ 259 Q Sbjct: 62 DLQ 64 Score = 45.4 bits (106), Expect = 6e-05 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 12/60 (20%) Frame = -3 Query: 411 LCFKCNQPGHFSRDCPGQA--APYGSSVGGNA----------NTGLCYKCNQPGHFARDC 268 +C++C + GH ++DC Q A Y GG+ CY C +PGH ARDC Sbjct: 47 ICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106 Score = 37.0 bits (84), Expect = 0.022 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Frame = -3 Query: 426 NASSGLCFKCNQPGHFSRDCP-------GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 +A C+ C + GH +DC G+ + + CY+C + GH AR+C Sbjct: 108 HADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 166
>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 48.1 bits (113), Expect = 9e-06 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 15/69 (21%) Frame = -3 Query: 420 SSGLCFKCNQPGHFSRDCP---------------GQAAPYGSSVGGNANTGLCYKCNQPG 286 SS CFKC + GH++R+CP G + G ++ +CY+C + G Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61 Query: 285 HFARDCPAQ 259 H A+DC Q Sbjct: 62 HLAKDCDLQ 70 Score = 45.8 bits (107), Expect = 5e-05 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 11/59 (18%) Frame = -3 Query: 411 LCFKCNQPGHFSRDCPGQA-APYGSSVGGNA----------NTGLCYKCNQPGHFARDC 268 +C++C + GH ++DC Q A Y GG+ CY C +PGH ARDC Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111 Score = 37.0 bits (84), Expect = 0.022 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Frame = -3 Query: 426 NASSGLCFKCNQPGHFSRDCP-------GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 +A C+ C + GH +DC G+ + + CY+C + GH AR+C Sbjct: 113 HADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171 Score = 33.9 bits (76), Expect = 0.18 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVGQERQMYVNGAASGGY 205 C+KC + GH+AR+CP G G+ R M G GG+ Sbjct: 6 CFKCGRSGHWARECPTGG-GRGRGMRSRG--RGGF 37
>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 48.1 bits (113), Expect = 9e-06 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 15/69 (21%) Frame = -3 Query: 420 SSGLCFKCNQPGHFSRDCP---------------GQAAPYGSSVGGNANTGLCYKCNQPG 286 SS CFKC + GH++R+CP G + G ++ +CY+C + G Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61 Query: 285 HFARDCPAQ 259 H A+DC Q Sbjct: 62 HLAKDCDLQ 70 Score = 45.8 bits (107), Expect = 5e-05 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 11/59 (18%) Frame = -3 Query: 411 LCFKCNQPGHFSRDCPGQA-APYGSSVGGNA----------NTGLCYKCNQPGHFARDC 268 +C++C + GH ++DC Q A Y GG+ CY C +PGH ARDC Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111 Score = 37.0 bits (84), Expect = 0.022 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Frame = -3 Query: 426 NASSGLCFKCNQPGHFSRDCP-------GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 +A C+ C + GH +DC G+ + + CY+C + GH AR+C Sbjct: 113 HADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171 Score = 33.9 bits (76), Expect = 0.18 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVGQERQMYVNGAASGGY 205 C+KC + GH+AR+CP G G+ R M G GG+ Sbjct: 6 CFKCGRSGHWARECPTGG-GRGRGMRSRG--RGGF 37
>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 48.1 bits (113), Expect = 9e-06 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 15/69 (21%) Frame = -3 Query: 420 SSGLCFKCNQPGHFSRDCP---------------GQAAPYGSSVGGNANTGLCYKCNQPG 286 SS CFKC + GH++R+CP G + G ++ +CY+C + G Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61 Query: 285 HFARDCPAQ 259 H A+DC Q Sbjct: 62 HLAKDCDLQ 70 Score = 45.8 bits (107), Expect = 5e-05 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 11/59 (18%) Frame = -3 Query: 411 LCFKCNQPGHFSRDCPGQA-APYGSSVGGNA----------NTGLCYKCNQPGHFARDC 268 +C++C + GH ++DC Q A Y GG+ CY C +PGH ARDC Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111 Score = 37.0 bits (84), Expect = 0.022 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Frame = -3 Query: 426 NASSGLCFKCNQPGHFSRDCP-------GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 +A C+ C + GH +DC G+ + + CY+C + GH AR+C Sbjct: 113 HADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171 Score = 33.9 bits (76), Expect = 0.18 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVGQERQMYVNGAASGGY 205 C+KC + GH+AR+CP G G+ R M G GG+ Sbjct: 6 CFKCGRSGHWARECPTGG-GRGRGMRSRG--RGGF 37
>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline| helicase 1) Length = 763 Score = 48.1 bits (113), Expect = 9e-06 Identities = 23/66 (34%), Positives = 30/66 (45%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQMYV 229 CF C QPGH S DCP +CY C QPGH +R+C + +E + Sbjct: 160 CFNCQQPGHRSSDCPEPRK--------EREPRVCYNCQQPGHTSRECTEERKPREGRTGG 211 Query: 228 NGAASG 211 G +G Sbjct: 212 FGGGAG 217 Score = 38.5 bits (88), Expect = 0.007 Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 26/83 (31%) Frame = -3 Query: 435 PAANASSGLCFKCNQPGHFSRDC-------PGQAAPYGSSVGGNANTG------------ 313 P +C+ C QPGH SR+C G+ +G G N G Sbjct: 176 PRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGG 235 Query: 312 -------LCYKCNQPGHFARDCP 265 C+ C GH + +CP Sbjct: 236 GEERGPMKCFNCKGEGHRSAECP 258 Score = 35.4 bits (80), Expect = 0.063 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 11/75 (14%) Frame = -3 Query: 387 GHFSRDCPGQAAPYGSSVGGNANTGL-----------CYKCNQPGHFARDCPAQGVGQER 241 G F G + GS GGN+ G C+ C QPGH + DCP +E Sbjct: 123 GGFGGSATGFGSGGGSFGGGNSGFGEGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREP 182 Query: 240 QMYVNGAASGGYNRQ 196 ++ N G +R+ Sbjct: 183 RVCYNCQQPGHTSRE 197 Score = 35.0 bits (79), Expect = 0.083 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCP 265 CF C GH S +CP P G C+ C + GH + +CP Sbjct: 244 CFNCKGEGHRSAECP--EPPRG-----------CFNCGEQGHRSNECP 278 Score = 30.4 bits (67), Expect = 2.0 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAP 349 CF C + GH S +CP A P Sbjct: 264 CFNCGEQGHRSNECPNPAKP 283
>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 178 Score = 48.1 bits (113), Expect = 9e-06 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 15/69 (21%) Frame = -3 Query: 420 SSGLCFKCNQPGHFSRDCP---------------GQAAPYGSSVGGNANTGLCYKCNQPG 286 SS CFKC + GH++R+CP G + G ++ +CY+C + G Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61 Query: 285 HFARDCPAQ 259 H A+DC Q Sbjct: 62 HLAKDCDLQ 70 Score = 45.4 bits (106), Expect = 6e-05 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 12/60 (20%) Frame = -3 Query: 411 LCFKCNQPGHFSRDCPGQA--APYGSSVGGNA----------NTGLCYKCNQPGHFARDC 268 +C++C + GH ++DC Q A Y GG+ CY C +PGH ARDC Sbjct: 53 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112 Score = 37.0 bits (84), Expect = 0.022 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Frame = -3 Query: 426 NASSGLCFKCNQPGHFSRDCP-------GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 +A C+ C + GH +DC G+ + + CY+C + GH AR+C Sbjct: 114 HADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 172 Score = 33.9 bits (76), Expect = 0.18 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVGQERQMYVNGAASGGY 205 C+KC + GH+AR+CP G G+ R M G GG+ Sbjct: 6 CFKCGRSGHWARECPTGG-GRGRGMRSRG--RGGF 37
>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 44.7 bits (104), Expect = 1e-04 Identities = 20/58 (34%), Positives = 27/58 (46%) Frame = -3 Query: 438 PPAANASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCP 265 P G C++C + GH++RDCP +A G C C P H+ RDCP Sbjct: 336 PAPKRPPPGPCYRCLKEGHWARDCPTKAT--------GPPPGPCPICKDPSHWKRDCP 385 Score = 35.4 bits (80), Expect = 0.063 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = -3 Query: 315 GLCYKCNQPGHFARDCPAQGVG 250 G CY+C + GH+ARDCP + G Sbjct: 344 GPCYRCLKEGHWARDCPTKATG 365
>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core| protein p24; Core protein p12 (p15)] Length = 432 Score = 43.9 bits (102), Expect = 2e-04 Identities = 21/55 (38%), Positives = 25/55 (45%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQE 244 CF+C + GH+SRDC P G C C P H+ RDCP QE Sbjct: 362 CFRCGKVGHWSRDCTQPRPP----------PGPCPLCQDPSHWKRDCPQLKPPQE 406
>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9| Length = 271 Score = 43.9 bits (102), Expect = 2e-04 Identities = 22/58 (37%), Positives = 30/58 (51%) Frame = -3 Query: 432 AANASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ 259 AA ++ +CF C +PGH DCP AA +G TG+CY+C H C A+ Sbjct: 122 AAKKNAMVCFHCRKPGHGIADCP--AALENQDMG----TGICYRCGSTEHEITKCKAK 173 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/66 (34%), Positives = 29/66 (43%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQMYV 229 CF C + GH SR CP + G A+ G C C H +DCP + ER + V Sbjct: 186 CFVCGEMGHLSRSCP------DNPKGLYADGGGCKLCGSVEHLKKDCP-ESQNSERMVTV 238 Query: 228 NGAASG 211 A G Sbjct: 239 GRWAKG 244 Score = 35.0 bits (79), Expect = 0.083 Identities = 17/65 (26%), Positives = 27/65 (41%) Frame = -3 Query: 417 SGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQ 238 +G+C++C H C + P G C+ C + GH +R CP G Sbjct: 154 TGICYRCGSTEHEITKCKAKVDP----ALGEFPFAKCFVCGEMGHLSRSCPDNPKG---- 205 Query: 237 MYVNG 223 +Y +G Sbjct: 206 LYADG 210
>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9| Length = 273 Score = 43.1 bits (100), Expect = 3e-04 Identities = 22/57 (38%), Positives = 28/57 (49%) Frame = -3 Query: 432 AANASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPA 262 AA ++ +CF C QPGH DCP A +G TG+CY+C H C A Sbjct: 122 AAKKNAMVCFHCRQPGHGIADCP--AVLESQDMG----TGICYRCGSTEHEMSKCRA 172 Score = 39.7 bits (91), Expect = 0.003 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH SR CP ++ G A+ G C C HF +DC Sbjct: 186 CFVCGEMGHLSRSCP------DNTKGVYADGGSCKLCGSVEHFKKDC 226
>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 43.1 bits (100), Expect = 3e-04 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = -3 Query: 438 PPAANASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCP 265 P G C++C + GH++RDCP + G C C P H+ RDCP Sbjct: 336 PAPKRPPPGPCYRCLKEGHWARDCPTKTT--------GPPPGPCPICKDPSHWKRDCP 385 Score = 34.7 bits (78), Expect = 0.11 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = -3 Query: 315 GLCYKCNQPGHFARDCPAQGVG 250 G CY+C + GH+ARDCP + G Sbjct: 344 GPCYRCLKEGHWARDCPTKTTG 365
>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 428 Score = 43.1 bits (100), Expect = 3e-04 Identities = 19/48 (39%), Positives = 23/48 (47%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCP 265 CF+C + GH+SRDC P G C C P H+ RDCP Sbjct: 356 CFRCGKAGHWSRDCTQPRPP----------PGPCPLCQDPTHWKRDCP 393
>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 429 Score = 43.1 bits (100), Expect = 3e-04 Identities = 19/48 (39%), Positives = 23/48 (47%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCP 265 CF+C + GH+SRDC P G C C P H+ RDCP Sbjct: 357 CFRCGKAGHWSRDCTQPRPP----------PGPCPLCQDPTHWKRDCP 394
>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 429 Score = 43.1 bits (100), Expect = 3e-04 Identities = 19/48 (39%), Positives = 23/48 (47%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCP 265 CF+C + GH+SRDC P G C C P H+ RDCP Sbjct: 357 CFRCGKAGHWSRDCTQPRPP----------PGPCPLCQDPTHWKRDCP 394
>GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 42.4 bits (98), Expect = 5e-04 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 C+ C +PGH S C AP +C+KC QPGHF++ C Sbjct: 383 CYNCGKPGHLSSQC---RAPK-----------VCFKCKQPGHFSKQC 415 Score = 34.3 bits (77), Expect = 0.14 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 411 LCFKCNQPGHFSRDC 367 +CFKC QPGHFS+ C Sbjct: 401 VCFKCKQPGHFSKQC 415 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%) Frame = -3 Query: 363 GQAAPY--GSSVGGNANTG-LCYKCNQPGHFARDCPAQGV 253 G A P+ G+ GG CY C +PGH + C A V Sbjct: 362 GLAGPFKGGALKGGPLKAAQTCYNCGKPGHLSSQCRAPKV 401
>GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 42.4 bits (98), Expect = 5e-04 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 C+ C +PGH S C AP +C+KC QPGHF++ C Sbjct: 383 CYNCGKPGHLSSQC---RAPK-----------VCFKCKQPGHFSKQC 415 Score = 34.3 bits (77), Expect = 0.14 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 411 LCFKCNQPGHFSRDC 367 +CFKC QPGHFS+ C Sbjct: 401 VCFKCKQPGHFSKQC 415 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%) Frame = -3 Query: 363 GQAAPY--GSSVGGNANTG-LCYKCNQPGHFARDCPAQGV 253 G A P+ G+ GG CY C +PGH + C A V Sbjct: 362 GLAGPFKGGALKGGPLKAAQTCYNCGKPGHLSSQCRAPKV 401
>GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 42.4 bits (98), Expect = 5e-04 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 C+ C +PGH S C AP +C+KC QPGHF++ C Sbjct: 383 CYNCGKPGHLSSQC---RAPK-----------VCFKCKQPGHFSKQC 415 Score = 34.3 bits (77), Expect = 0.14 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 411 LCFKCNQPGHFSRDC 367 +CFKC QPGHFS+ C Sbjct: 401 VCFKCKQPGHFSKQC 415 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%) Frame = -3 Query: 363 GQAAPY--GSSVGGNANTG-LCYKCNQPGHFARDCPAQGV 253 G A P+ G+ GG CY C +PGH + C A V Sbjct: 362 GLAGPFKGGALKGGPLKAAQTCYNCGKPGHLSSQCRAPKV 401
>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 653 Score = 42.0 bits (97), Expect = 7e-04 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = -3 Query: 426 NASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ 259 N G CFKC + GHF++DC + + + GLC +C + H+A +C ++ Sbjct: 539 NKDRGGCFKCGKKGHFAKDC----RDHSNKNPESKVPGLCPRCKRGKHWANECKSK 590
>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline| helicase 4) Length = 1156 Score = 41.6 bits (96), Expect = 9e-04 Identities = 21/57 (36%), Positives = 24/57 (42%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQE 244 G C C GHF+ DC P G C C Q GHFA+DC + V E Sbjct: 616 GPCRNCGIEGHFAVDCDQPKVPRGP----------CRNCGQEGHFAKDCQNERVRME 662 Score = 37.4 bits (85), Expect = 0.017 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ 259 G C C Q GHF++DC + T C +C + GH+ +CP + Sbjct: 639 GPCRNCGQEGHFAKDCQNERVRMEP-------TEPCRRCAEEGHWGYECPTR 683 Score = 35.4 bits (80), Expect = 0.063 Identities = 16/47 (34%), Positives = 19/47 (40%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 C C + GH S++C P C C Q GHFA DC Sbjct: 572 CHNCGEEGHISKECDKPKVPRFP----------CRNCEQLGHFASDC 608
>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein| p2A; Core protein p2B; Core protein p10; Capsid protein p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)] Length = 701 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/68 (33%), Positives = 31/68 (45%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQM 235 GLC+ C PGH+ CP + GN+ C CN GH A+ C + G + Q Sbjct: 507 GLCYTCGSPGHYQAQCPKKRK------SGNSRE-RCQLCNGMGHNAKQCRKRD-GNQGQR 558 Query: 234 YVNGAASG 211 G +SG Sbjct: 559 PGKGLSSG 566 Score = 37.4 bits (85), Expect = 0.017 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = -3 Query: 345 GSSVGGNANTGLCYKCNQPGHFARDCPAQ---GVGQERQMYVNG 223 G + G GLCY C PGH+ CP + G +ER NG Sbjct: 497 GQTGSGGRARGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNG 540
>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 657 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANT---GLCYKCNQPGHFARDCPAQ 259 G CFKC + GHF+++C + N+ T GLC +C + H+A +C ++ Sbjct: 547 GCCFKCGRKGHFAKNC-------HEHIHNNSETKAPGLCPRCKRGKHWANECKSK 594
>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp24; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 656 Score = 39.7 bits (91), Expect = 0.003 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCPGQAAPYGSSVGGNAN---TGLCYKCNQPGHFARDCPAQ 259 G CFKC + GHF+++C A NA GLC +C + H+A +C ++ Sbjct: 546 GCCFKCGKKGHFAKNCHEHA-------HNNAEPKVPGLCPRCKRGKHWANECKSK 593
>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 39.7 bits (91), Expect = 0.003 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 8/80 (10%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ--------GV 253 C+ C + GH +R C AP C+KC +PGH +CP + + Sbjct: 390 CWNCGKEGHSARQC---RAPRRQG---------CWKCGKPGHIMTNCPDRQAGFLRDWPL 437 Query: 252 GQERQMYVNGAASGGYNRQS 193 G+E + G +S G N S Sbjct: 438 GKEAPQFPRGPSSTGANTNS 457
>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 521 Score = 39.7 bits (91), Expect = 0.003 Identities = 17/50 (34%), Positives = 21/50 (42%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ 259 C+ C + GH R CP C KC +PGH A+DC Q Sbjct: 404 CYNCGKFGHMQRQCP------------EPRKMRCLKCGKPGHLAKDCRGQ 441
>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 520 Score = 39.3 bits (90), Expect = 0.004 Identities = 17/50 (34%), Positives = 21/50 (42%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ 259 C+ C + GH R CP C KC +PGH A+DC Q Sbjct: 400 CYNCGKFGHMQRQCP------------EPRKIKCLKCGKPGHLAKDCRGQ 437
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT| 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1328 Score = 39.3 bits (90), Expect = 0.004 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVG 331 C+ CNQPGHF RDCP G + G Sbjct: 232 CYNCNQPGHFKRDCPNPRKGKGETSG 257 Score = 38.9 bits (89), Expect = 0.006 Identities = 13/15 (86%), Positives = 13/15 (86%) Frame = -3 Query: 309 CYKCNQPGHFARDCP 265 CY CNQPGHF RDCP Sbjct: 232 CYNCNQPGHFKRDCP 246
>GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 39.3 bits (90), Expect = 0.004 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = -3 Query: 429 ANASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 + S +CF C +PGH +R C + C KC +PGH A C Sbjct: 370 SKGSGPVCFNCKKPGHLARQC--------------RDVKKCNKCGKPGHLAAKC 409
>GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 38.9 bits (89), Expect = 0.006 Identities = 17/54 (31%), Positives = 22/54 (40%) Frame = -3 Query: 429 ANASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 + S +CF C +PGH +R C C KC +PGH A C Sbjct: 370 SKGSGPVCFNCKKPGHLARQC--------------REVKKCNKCGKPGHLAAKC 409
>GAG_JSRV (P31622) Gag polyprotein [Contains: Core protein p10; Core protein| p18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 612 Score = 38.5 bits (88), Expect = 0.007 Identities = 19/47 (40%), Positives = 26/47 (55%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C QPGH + CP + + +SV LC +C + H+ARDC Sbjct: 509 CFVCGQPGHRAAVCPQK---HQTSVN---TPNLCPRCKKGKHWARDC 549 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -3 Query: 327 NANTGLCYKCNQPGHFARDCPAQGVGQERQMYVN 226 + N+G C+ C QPGH A CP Q+ Q VN Sbjct: 504 SGNSG-CFVCGQPGHRAAVCP-----QKHQTSVN 531
>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13| Length = 166 Score = 38.5 bits (88), Expect = 0.007 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = -3 Query: 411 LCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQMY 232 +C+ C + GH ++DC CY C + GH ARDC Q +E++ Y Sbjct: 66 ICYNCGRSGHIAKDCKDPKRERRQH---------CYTCGRLGHLARDCDRQ---KEQKCY 113 Query: 231 VNG 223 G Sbjct: 114 SCG 116 Score = 36.6 bits (83), Expect = 0.028 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVG--GNANTGL----CYKCNQPGHFARDCPAQGVGQ 247 C+ C + GH +RDC Q S G G+ CY+C + GH A +C GQ Sbjct: 91 CYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSKARPGQ 150 Score = 35.4 bits (80), Expect = 0.063 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 8/58 (13%) Frame = -3 Query: 405 FKCNQPGHFSRDCP--------GQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQG 256 F C GH++R CP G GS G + CY C + G A++C G Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLG 64 Score = 32.7 bits (73), Expect = 0.41 Identities = 18/51 (35%), Positives = 22/51 (43%) Frame = -3 Query: 306 YKCNQPGHFARDCPAQGVGQERQMYVNGAASGGYNRQSYVGS*VVWPITCF 154 + C GH+AR CP G G G GG+ R S GS TC+ Sbjct: 7 FACGHSGHWARGCPRGGAG--------GRRGGGHGRGSQCGS-TTLSYTCY 48
>GAG_FIVWO (Q05313) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 38.1 bits (87), Expect = 0.010 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -3 Query: 411 LCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 +CF C +PGH +R C + C KC +PGH A C Sbjct: 376 VCFNCKRPGHLARQC--------------RDVKKCNKCGKPGHLAAKC 409
>AIR2_YEAST (Q12476) Protein AIR2 (Arginine methyltransferase-interacting RING| finger protein 2) Length = 344 Score = 37.7 bits (86), Expect = 0.013 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGL-----CYKCNQPGHFARDCP 265 C C+Q GH +DCP Y + + + C KC++ GH+ CP Sbjct: 63 CNNCSQRGHLKKDCPHIICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCP 115
>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC| 3.4.23.-)] Length = 827 Score = 37.4 bits (85), Expect = 0.017 Identities = 20/47 (42%), Positives = 23/47 (48%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C +PGHF +DC AP GG LC KC + H A C Sbjct: 460 CFNCGKPGHFKKDC---RAP--DKQGGTLT--LCSKCGKGYHRADQC 499 Score = 30.4 bits (67), Expect = 2.0 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -3 Query: 309 CYKCNQPGHFARDCPA 262 C+ C +PGHF +DC A Sbjct: 460 CFNCGKPGHFKKDCRA 475
>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 37.4 bits (85), Expect = 0.017 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 C+ C + GH R+C Q CY C +PGH AR+C Sbjct: 405 CYGCGKTGHLKRNCKQQK---------------CYHCGKPGHQARNC 436 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 5/33 (15%) Frame = -3 Query: 426 NASSGLCFKCNQPGHFSRDCPGQ-----AAPYG 343 N C+ C +PGH +R+C + +APYG Sbjct: 417 NCKQQKCYHCGKPGHQARNCRSKNGKCSSAPYG 449 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/36 (33%), Positives = 15/36 (41%) Frame = -3 Query: 366 PGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ 259 P Y S G + CY C + GH R+C Q Sbjct: 386 PHTPEAYASQTSGPEDGRRCYGCGKTGHLKRNCKQQ 421
>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 37.4 bits (85), Expect = 0.017 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 C+ C + GH R+C Q CY C +PGH AR+C Sbjct: 405 CYGCGKTGHLKRNCKQQK---------------CYHCGKPGHQARNC 436 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 5/33 (15%) Frame = -3 Query: 426 NASSGLCFKCNQPGHFSRDCPGQ-----AAPYG 343 N C+ C +PGH +R+C + +APYG Sbjct: 417 NCKQQKCYHCGKPGHQARNCRSKNGKCSSAPYG 449 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/36 (33%), Positives = 15/36 (41%) Frame = -3 Query: 366 PGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ 259 P Y S G + CY C + GH R+C Q Sbjct: 386 PHTPEAYASQTSGPEDGRRCYGCGKTGHLKRNCKQQ 421
>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I| Length = 218 Score = 37.0 bits (84), Expect = 0.022 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQMYV 229 CF C Q GH +DCP N +C++C H C +G + + ++ Sbjct: 79 CFACRQQGHIVQDCP----------EAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFI 128 Query: 228 ---NGAASG 211 NG SG Sbjct: 129 CHENGHLSG 137 Score = 32.0 bits (71), Expect = 0.70 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C++ GH S C + P G G G C C+ H A+DC Sbjct: 126 CFICHENGHLSGQC--EQNPKGLYPKG----GCCKFCSSVHHLAKDC 166
>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1463 Score = 37.0 bits (84), Expect = 0.022 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 8/80 (10%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ--------GV 253 C+ C + GH +R C AP C+KC +PGH +CP + + Sbjct: 390 CWNCGKEGHSARQC---RAPRRQG---------CWKCGKPGHIMTNCPDRQAGFLRTGPL 437 Query: 252 GQERQMYVNGAASGGYNRQS 193 G+E G +S G + S Sbjct: 438 GKEAPQLPRGPSSAGADTNS 457
>AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-interacting RING| finger protein 1) Length = 360 Score = 36.6 bits (83), Expect = 0.028 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTG-----LCYKCNQPGHFARDCP 265 C C+Q GH R+CP Y + + + +C CN GH+ CP Sbjct: 76 CNNCSQRGHLKRNCPHVICTYCGFMDDHYSQHCPKAIICTNCNANGHYKSQCP 128 Score = 31.6 bits (70), Expect = 0.91 Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 7/54 (12%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTG-------LCYKCNQPGHFARDC 268 C CN H CP Y +AN G CY C GHF DC Sbjct: 136 CTLCNSKRHSRERCPSIWRSYLLKTK-DANQGDFDFQTVFCYNCGNAGHFGDDC 188
>GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 449 Score = 36.6 bits (83), Expect = 0.028 Identities = 15/48 (31%), Positives = 20/48 (41%) Frame = -3 Query: 411 LCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 +CF C +PGH +R C C C +PGH A +C Sbjct: 376 VCFNCKKPGHLARQC--------------KEAKRCNNCGKPGHLAANC 409
>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 36.6 bits (83), Expect = 0.028 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R C AP C+KC +PGH +CP + G Sbjct: 390 CWNCGKEGHSARQC---RAPRRQG---------CWKCGKPGHIMTNCPDRQAG 430 Score = 29.6 bits (65), Expect = 3.5 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPY 346 C+KC +PGH +CP + A + Sbjct: 411 CWKCGKPGHIMTNCPDRQAGF 431
>GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 521 Score = 36.6 bits (83), Expect = 0.028 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R C AP C+KC +PGH +CP + G Sbjct: 390 CWNCGKEGHSARQC---RAPRRQG---------CWKCGKPGHIMTNCPDRQAG 430 Score = 29.6 bits (65), Expect = 3.5 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPY 346 C+KC +PGH +CP + A + Sbjct: 411 CWKCGKPGHIMTNCPDRQAGF 431
>GAK5_HUMAN (P62684) HERV-K_19p13.11 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K113 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 36.2 bits (82), Expect = 0.037 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCP---GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 G C+ C Q GH ++CP Q ++ G LC +C + H+A C Sbjct: 543 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQC 594 Score = 31.6 bits (70), Expect = 0.91 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Frame = -3 Query: 345 GSSVGGNANT--GLCYKCNQPGHFARDCP 265 G +GG T G CY C Q GH ++CP Sbjct: 531 GVVLGGQVRTFGGKCYNCGQIGHLKKNCP 559
>GAK4_HUMAN (P63126) HERV-K_6q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K109 Gag protein) (HERV-K(C6) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 36.2 bits (82), Expect = 0.037 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCP---GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 G C+ C Q GH ++CP Q ++ G LC +C + H+A C Sbjct: 543 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQC 594 Score = 31.6 bits (70), Expect = 0.91 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Frame = -3 Query: 345 GSSVGGNANT--GLCYKCNQPGHFARDCP 265 G +GG T G CY C Q GH ++CP Sbjct: 531 GVVLGGQVRTFGGKCYNCGQIGHLKKNCP 559
>GAK3_HUMAN (Q9YNA8) HERV-K_19q12 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(C19) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 36.2 bits (82), Expect = 0.037 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCP---GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 G C+ C Q GH ++CP Q ++ G LC +C + H+A C Sbjct: 543 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQC 594 Score = 31.6 bits (70), Expect = 0.91 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Frame = -3 Query: 345 GSSVGGNANT--GLCYKCNQPGHFARDCP 265 G +GG T G CY C Q GH ++CP Sbjct: 531 GVVLGGQVRTFGGKCYNCGQIGHLKKNCP 559
>GAK1_HUMAN (P62683) HERV-K_12q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 36.2 bits (82), Expect = 0.037 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCP---GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 G C+ C Q GH ++CP Q ++ G LC +C + H+A C Sbjct: 543 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQC 594 Score = 31.6 bits (70), Expect = 0.91 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Frame = -3 Query: 345 GSSVGGNANT--GLCYKCNQPGHFARDCP 265 G +GG T G CY C Q GH ++CP Sbjct: 531 GVVLGGQVRTFGGKCYNCGQIGHLKKNCP 559
>GAK12_HUMAN (P63130) HERV-K_1q22 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K102 Gag protein) (HERV-K(III) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 36.2 bits (82), Expect = 0.037 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCP---GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 G C+ C Q GH ++CP Q ++ G LC +C + H+A C Sbjct: 543 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQC 594 Score = 31.6 bits (70), Expect = 0.91 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Frame = -3 Query: 345 GSSVGGNANT--GLCYKCNQPGHFARDCP 265 G +GG T G CY C Q GH ++CP Sbjct: 531 GVVLGGQVRTFGGKCYNCGQIGHLKKNCP 559
>GAK11_HUMAN (P63145) HERV-K_22q11.21 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K101 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 36.2 bits (82), Expect = 0.037 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCP---GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 G C+ C Q GH ++CP Q ++ G LC +C + H+A C Sbjct: 543 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQC 594 Score = 31.6 bits (70), Expect = 0.91 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Frame = -3 Query: 345 GSSVGGNANT--GLCYKCNQPGHFARDCP 265 G +GG T G CY C Q GH ++CP Sbjct: 531 GVVLGGQVRTFGGKCYNCGQIGHLKKNCP 559
>GAK10_HUMAN (P87889) HERV-K_5q33.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K10 Gag protein) (HERV-K107 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 36.2 bits (82), Expect = 0.037 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCP---GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 G C+ C Q GH ++CP Q ++ G LC +C + H+A C Sbjct: 543 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQC 594 Score = 31.6 bits (70), Expect = 0.91 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Frame = -3 Query: 345 GSSVGGNANT--GLCYKCNQPGHFARDCP 265 G +GG T G CY C Q GH ++CP Sbjct: 531 GVVLGGQVRTFGGKCYNCGQIGHLKKNCP 559
>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 519 Score = 36.2 bits (82), Expect = 0.037 Identities = 16/50 (32%), Positives = 20/50 (40%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ 259 C+ C + GH R CP C KC + GH A+DC Q Sbjct: 399 CYNCGKFGHMQRQCP------------EPRKTKCLKCGKLGHLAKDCRGQ 436
>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated| protein pp21; Protein p3; Protein p8; Protein n; Major core protein p27; Nucleic acid-binding protein p14] Length = 590 Score = 36.2 bits (82), Expect = 0.037 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = -3 Query: 411 LCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ 259 +CF C + GH RDC + GS A GLC +C + H+ +C ++ Sbjct: 525 VCFSCGKTGHIKRDCKEEK---GSK---RAPPGLCPRCKKGYHWKSECKSK 569 Score = 32.3 bits (72), Expect = 0.54 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = -3 Query: 348 YGSSVGGNANTG-LCYKCNQPGHFARDC 268 YG GG + G +C+ C + GH RDC Sbjct: 512 YGGGKGGQGSKGPVCFSCGKTGHIKRDC 539
>GAK6_HUMAN (P62685) HERV-K_8p23.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K115 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 646 Score = 36.2 bits (82), Expect = 0.037 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCP---GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 G C+ C Q GH ++CP Q ++ G LC +C + H+A C Sbjct: 543 GKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQC 594 Score = 31.6 bits (70), Expect = 0.91 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Frame = -3 Query: 345 GSSVGGNANT--GLCYKCNQPGHFARDCP 265 G +GG T G CY C Q GH ++CP Sbjct: 531 GVVLGGQVRTFGGKCYNCGQIGHLKKNCP 559
>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein| p25; Core protein p16] Length = 508 Score = 35.8 bits (81), Expect = 0.049 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGV 253 CF C + GH +R+C AP C++C Q GH +DC + V Sbjct: 402 CFNCGKEGHLARNCK---APRRKG---------CWRCGQEGHQMKDCTGRQV 441
>GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosphorylated| protein pp21; Protein p3; Protein p8; Protein n; Major core protein p27; Nucleic acid-binding protein p14] Length = 590 Score = 35.8 bits (81), Expect = 0.049 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = -3 Query: 423 ASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ 259 A +CF C + GH +DC + GS A GLC +C + H+ +C ++ Sbjct: 521 AEGPVCFSCGKTGHIRKDCKDEK---GSK---RAPPGLCPRCKKGYHWKSECKSK 569 Score = 30.0 bits (66), Expect = 2.7 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = -3 Query: 348 YGSSVGGNANTG-LCYKCNQPGHFARDC 268 YG GG G +C+ C + GH +DC Sbjct: 512 YGGGKGGQGAEGPVCFSCGKTGHIRKDC 539
>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 666 Score = 35.4 bits (80), Expect = 0.063 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 4/51 (7%) Frame = -3 Query: 408 CFKCNQPGHFSRDCP----GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 C+ C Q GH R CP + +GLC KC + H+A C Sbjct: 544 CYNCGQIGHLKRSCPVLNKQNIINQAITAKNKKPSGLCPKCGKGKHWANQC 594 Score = 30.4 bits (67), Expect = 2.0 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%) Frame = -3 Query: 345 GSSVGGNANT--GLCYKCNQPGHFARDCP 265 G ++GG T CY C Q GH R CP Sbjct: 530 GLTLGGQVRTFGKKCYNCGQIGHLKRSCP 558 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/46 (32%), Positives = 20/46 (43%) Frame = -3 Query: 417 SGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHF 280 SGLC KC + H++ C + G + GN G Q G F Sbjct: 578 SGLCPKCGKGKHWANQCHSKFDKDGQPLSGNRKRGQPQAPQQTGAF 623
>GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 510 Score = 35.4 bits (80), Expect = 0.063 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH ++ C AP C+KC +PGH CP + VG Sbjct: 393 CWNCGKEGHTAKQCK---APRRQG---------CWKCGKPGHQMAKCPERQVG 433
>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 513 Score = 35.4 bits (80), Expect = 0.063 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH R+C AP C+KC + GH A+DC Sbjct: 392 CFNCGKFGHMQRECK---APRQIK---------CFKCGKIGHMAKDC 426 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 408 CFKCNQPGHFSRDCP-GQAAPYGSSVGGNA 322 CFKC + GH ++DC GQA G G A Sbjct: 413 CFKCGKIGHMAKDCKNGQANFLGYGHWGGA 442
>GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 446 Score = 35.4 bits (80), Expect = 0.063 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Frame = -3 Query: 438 PPAANASSGL--CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 PP G+ C+ C +PGH +R C +C+ C + GH +DC Sbjct: 374 PPRKEGKQGVQKCYYCGKPGHLARQC--------------RQGIICHHCGKRGHMQKDC 418 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -3 Query: 330 GNANTGLCYKCNQPGHFARDCPAQGV 253 G CY C +PGH AR C QG+ Sbjct: 379 GKQGVQKCYYCGKPGHLARQC-RQGI 403
>GAG_IPHA (P04023) Retrovirus-related Gag polyprotein [Contains: Protease (EC| 3.4.23.-)] Length = 572 Score = 35.4 bits (80), Expect = 0.063 Identities = 16/58 (27%), Positives = 24/58 (41%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQM 235 CF C + GH +DC S LCY+C + H A +C G ++ + Sbjct: 449 CFNCGRMGHLKKDCQAPERTRESK--------LCYRCGKGYHRASECGIMDSGADKSI 498 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = -3 Query: 324 ANTGLCYKCNQPGHFARDCPAQGVGQERQMYVNGAASGGYNRQSYVG 184 +N C+ C + GH +DC A +E ++ GY+R S G Sbjct: 444 SNRKACFNCGRMGHLKKDCQAPERTRESKLCYR--CGKGYHRASECG 488
>GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 500 Score = 35.0 bits (79), Expect = 0.083 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQG 256 CF C + GH +++C AP C+KC + GH +DC +G Sbjct: 391 CFNCGKVGHIAKNC---RAPRKKG---------CWKCGKEGHQMKDCTNEG 429
>POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1435 Score = 35.0 bits (79), Expect = 0.083 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQG 256 CF C + GH +++C AP C+KC + GH +DC +G Sbjct: 391 CFNCGKVGHIAKNC---RAPRKKG---------CWKCGKEGHQMKDCTNEG 429
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 34.7 bits (78), Expect = 0.11 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 397 CFNCGKEGHLARNC---RAPRKKG---------CWKCGKEGHQMKDC 431
>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 34.7 bits (78), Expect = 0.11 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHIARNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 34.7 bits (78), Expect = 0.11 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHLARNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 34.7 bits (78), Expect = 0.11 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHIARNC---KAPRKKG---------CWKCGREGHQMKDC 425
>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 34.7 bits (78), Expect = 0.11 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHIARNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 34.7 bits (78), Expect = 0.11 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHIARNC---KAPRKKG---------CWKCGKEGHQMKDC 425
>GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(HML-2.HOM) Gag protein) (HERV-K108 Gag protein) (HERV-K(C7) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 34.7 bits (78), Expect = 0.11 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = -3 Query: 408 CFKCNQPGHFSRDCP---GQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 C+ C Q GH ++CP Q ++ G LC +C + H+A C Sbjct: 545 CYNCGQIGHLKKNCPVLNKQNITIQATTTGREPPDLCPRCKKGKHWASQC 594 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%) Frame = -3 Query: 345 GSSVGGNANT--GLCYKCNQPGHFARDCP 265 G +GG T CY C Q GH ++CP Sbjct: 531 GVVLGGQVRTFGRKCYNCGQIGHLKKNCP 559
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 34.7 bits (78), Expect = 0.11 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 397 CFNCGKEGHLARNC---RAPRKKG---------CWKCGKEGHQMKDC 431
>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 34.7 bits (78), Expect = 0.11 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHIARNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 34.7 bits (78), Expect = 0.11 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHIARNC---KAPRKKG---------CWKCGKEGHQMKDC 425
>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 531 Score = 34.7 bits (78), Expect = 0.11 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHLARNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 549 Score = 34.7 bits (78), Expect = 0.11 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHIARNC---KAPRKKG---------CWKCGREGHQMKDC 425
>ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5| Length = 475 Score = 34.3 bits (77), Expect = 0.14 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -3 Query: 312 LCYKCNQPGHFARDCPAQ 259 LC C PGHFARDCP + Sbjct: 444 LCLYCGYPGHFARDCPVK 461 Score = 33.9 bits (76), Expect = 0.18 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -3 Query: 411 LCFKCNQPGHFSRDCPGQAAPYGSSVGGN 325 LC C PGHF+RDCP P+ + GN Sbjct: 444 LCLYCGYPGHFARDCP--VKPHQALQAGN 470
>MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synthesis lethal 5| protein) Length = 476 Score = 34.3 bits (77), Expect = 0.14 Identities = 17/47 (36%), Positives = 20/47 (42%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 C C H DCP + P N +C C Q GHF+RDC Sbjct: 273 CPICGLKDHKRYDCPNRKIP-------NIQGIVCKICGQTGHFSRDC 312 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -3 Query: 426 NASSGLCFKCNQPGHFSRDC 367 N +C C Q GHFSRDC Sbjct: 293 NIQGIVCKICGQTGHFSRDC 312
>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 33.9 bits (76), Expect = 0.18 Identities = 13/47 (27%), Positives = 20/47 (42%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 C+ C +PGH +R C +C+ C + GH +DC Sbjct: 387 CYNCGKPGHLARQC--------------RQGIICHHCGKRGHMQKDC 419 Score = 30.0 bits (66), Expect = 2.7 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGV 253 CY C +PGH AR C QG+ Sbjct: 387 CYNCGKPGHLARQC-RQGI 404
>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 33.9 bits (76), Expect = 0.18 Identities = 13/47 (27%), Positives = 20/47 (42%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 C+ C +PGH +R C +C+ C + GH +DC Sbjct: 387 CYNCGKPGHLARQC--------------RQGIICHHCGKRGHMQKDC 419 Score = 30.0 bits (66), Expect = 2.7 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGV 253 CY C +PGH AR C QG+ Sbjct: 387 CYNCGKPGHLARQC-RQGI 404
>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 33.9 bits (76), Expect = 0.18 Identities = 13/47 (27%), Positives = 20/47 (42%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 C+ C +PGH +R C +C+ C + GH +DC Sbjct: 387 CYNCGKPGHLARQC--------------RQGIICHHCGKRGHMQKDC 419 Score = 30.0 bits (66), Expect = 2.7 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGV 253 CY C +PGH AR C QG+ Sbjct: 387 CYNCGKPGHLARQC-RQGI 404
>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 33.9 bits (76), Expect = 0.18 Identities = 13/47 (27%), Positives = 20/47 (42%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 C+ C +PGH +R C +C+ C + GH +DC Sbjct: 387 CYNCGKPGHLARQC--------------RQGIICHHCGKRGHMQKDC 419 Score = 30.0 bits (66), Expect = 2.7 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGV 253 CY C +PGH AR C QG+ Sbjct: 387 CYNCGKPGHLARQC-RQGI 404
>GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 33.9 bits (76), Expect = 0.18 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHTARNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 33.9 bits (76), Expect = 0.18 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHTARNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 33.9 bits (76), Expect = 0.18 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHTARNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 33.9 bits (76), Expect = 0.18 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHTARNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 33.9 bits (76), Expect = 0.18 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHTARNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 33.9 bits (76), Expect = 0.18 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHTARNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 33.9 bits (76), Expect = 0.18 Identities = 19/65 (29%), Positives = 27/65 (41%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQMYV 229 C+ C + GH +R C AP C+KC + GH +CP + G R + Sbjct: 390 CWNCGKDGHSARQC---RAPRRQG---------CWKCGKSGHVMANCPERQAGFLRDWPM 437 Query: 228 NGAAS 214 AS Sbjct: 438 GKEAS 442
>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 33.9 bits (76), Expect = 0.18 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 8/80 (10%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCP--------AQGV 253 C+ C + GH +R C AP C+KC + GH +CP A + Sbjct: 389 CWNCGKEGHSARQC---RAPRRQG---------CWKCGKSGHIMANCPDRQAGFLRAWTM 436 Query: 252 GQERQMYVNGAASGGYNRQS 193 G+E G G N S Sbjct: 437 GKEAPQLPRGPKFAGANTNS 456
>POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1463 Score = 33.9 bits (76), Expect = 0.18 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 8/80 (10%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQ--------GV 253 C+ C + GH +R C AP C+KC + GH CP + + Sbjct: 391 CWNCGKEGHSARQC---RAPRRQG---------CWKCGKTGHVMAKCPERQAGFLRDGSM 438 Query: 252 GQERQMYVNGAASGGYNRQS 193 G+E G +S G + S Sbjct: 439 GKEAPQLPRGPSSSGADTNS 458
>GAG_HV1Z2 (P12495) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 500 Score = 33.5 bits (75), Expect = 0.24 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 393 CFNCGKEGHIAKNC---RAPRRKG---------CWKCGKEGHQLKDC 427
>POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1549 Score = 33.5 bits (75), Expect = 0.24 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = -3 Query: 405 FKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 + C + GH +R C AP C+KC +PGH +CP + G Sbjct: 391 WNCGKEGHSARQC---RAPRRQG---------CWKCGKPGHIMANCPERQAG 430 Score = 29.3 bits (64), Expect = 4.5 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPY 346 C+KC +PGH +CP + A + Sbjct: 411 CWKCGKPGHIMANCPERQAGF 431
>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 519 Score = 33.5 bits (75), Expect = 0.24 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R C AP C+KC + GH +CP + G Sbjct: 389 CWNCGKEGHSARQC---RAPRRQG---------CWKCGKSGHIMANCPDRQAG 429
>GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 33.5 bits (75), Expect = 0.24 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHIAKNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 33.5 bits (75), Expect = 0.24 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHIAKNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 33.5 bits (75), Expect = 0.24 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -3 Query: 333 GGNANTGLCYKCNQPGHFARDCPAQGVGQERQMYVNGAASGGY 205 G TG CY+C Q GH++++CP G R+ G +S G+ Sbjct: 155 GMGERTG-CYRCGQEGHWSKECPLDQNGSYRE----GPSSEGF 192 Score = 30.0 bits (66), Expect = 2.7 Identities = 8/15 (53%), Positives = 13/15 (86%) Frame = -3 Query: 408 CFKCNQPGHFSRDCP 364 C++C Q GH+S++CP Sbjct: 162 CYRCGQEGHWSKECP 176
>POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1427 Score = 33.5 bits (75), Expect = 0.24 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 385 CFNCGKEGHLAKNC---RAPRKKG---------CWKCGKEGHQMKDC 419
>POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1433 Score = 33.5 bits (75), Expect = 0.24 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 390 CFNCGKEGHIAKNC---RAPRKKG---------CWKCGREGHQMKDC 424
>POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 33.5 bits (75), Expect = 0.24 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHIAKNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 33.5 bits (75), Expect = 0.24 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 391 CFNCGKEGHIAKNC---RAPRKKG---------CWKCGKEGHQMKDC 425
>GAG_HV1OY (P20889) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 498 Score = 33.5 bits (75), Expect = 0.24 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 390 CFNCGKEGHIAKNC---RAPRKKG---------CWKCGREGHQMKDC 424
>GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 33.5 bits (75), Expect = 0.24 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R C AP C+KC + GH +CP + G Sbjct: 390 CWNCGKDGHSARQC---RAPRRQG---------CWKCGKSGHVMANCPERQAG 430
>GAG_HV2BE (P18095) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 33.5 bits (75), Expect = 0.24 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = -3 Query: 405 FKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 + C + GH +R C AP C+KC +PGH +CP + G Sbjct: 391 WNCGKEGHSARQC---RAPRRQG---------CWKCGKPGHIMANCPERQAG 430 Score = 29.3 bits (64), Expect = 4.5 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPY 346 C+KC +PGH +CP + A + Sbjct: 411 CWKCGKPGHIMANCPERQAGF 431
>POL_HV1Z2 (P12499) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1435 Score = 33.5 bits (75), Expect = 0.24 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 393 CFNCGKEGHIAKNC---RAPRRKG---------CWKCGKEGHQLKDC 427
>GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 492 Score = 33.5 bits (75), Expect = 0.24 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 385 CFNCGKEGHLAKNC---RAPRKKG---------CWKCGKEGHQMKDC 419
>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1464 Score = 33.1 bits (74), Expect = 0.31 Identities = 16/53 (30%), Positives = 22/53 (41%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R C AP C+KC + GH CP + G Sbjct: 389 CWNCGKQGHTARQC---RAPRRQG---------CWKCGKTGHIMSKCPERQAG 429
>POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1440 Score = 33.1 bits (74), Expect = 0.31 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 394 CFNCGKEGHIAKNC---RAPRKRG---------CWKCGKEGHQMKDC 428
>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1438 Score = 33.1 bits (74), Expect = 0.31 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH ++C Sbjct: 391 CFNCGKEGHIARNC---RAPRKKG---------CWKCGKEGHQMKEC 425
>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 503 Score = 33.1 bits (74), Expect = 0.31 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +R+C AP C+KC + GH ++C Sbjct: 391 CFNCGKEGHIARNC---RAPRKKG---------CWKCGKEGHQMKEC 425
>GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 506 Score = 33.1 bits (74), Expect = 0.31 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 394 CFNCGKEGHIAKNC---RAPRKRG---------CWKCGKEGHQMKDC 428
>GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 33.1 bits (74), Expect = 0.31 Identities = 16/53 (30%), Positives = 22/53 (41%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R C AP C+KC + GH CP + G Sbjct: 390 CWNCGKEGHSARQC---RAPRRQG---------CWKCGKAGHIMAKCPERQAG 430
>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 33.1 bits (74), Expect = 0.31 Identities = 16/53 (30%), Positives = 22/53 (41%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R C AP C+KC + GH CP + G Sbjct: 389 CWNCGKQGHTARQC---RAPRRQG---------CWKCGKTGHIMSKCPERQAG 429
>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 33.1 bits (74), Expect = 0.31 Identities = 16/53 (30%), Positives = 22/53 (41%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R C AP C+KC + GH CP + G Sbjct: 390 CWNCGKEGHSARQC---RAPRRQG---------CWKCGKAGHIMAKCPERQAG 430
>POL_HV1ND (P18802) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1431 Score = 32.7 bits (73), Expect = 0.41 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 389 CFNCGKEGHTAKNC---RAPRKKG---------CWKCGREGHQMKDC 423
>GAG_HV1ND (P18800) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 496 Score = 32.7 bits (73), Expect = 0.41 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C+KC + GH +DC Sbjct: 389 CFNCGKEGHTAKNC---RAPRKKG---------CWKCGREGHQMKDC 423
>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 32.7 bits (73), Expect = 0.41 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH ++ C AP C+KC + GH +CP + G Sbjct: 390 CWNCGKEGHSAKQC---RAPRRQG---------CWKCGKSGHIMANCPERQAG 430
>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 32.7 bits (73), Expect = 0.41 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH ++ C AP C+KC + GH +CP + G Sbjct: 390 CWNCGKEGHSAKQC---RAPRRQG---------CWKCGKSGHIMANCPERQAG 430
>GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 507 Score = 32.7 bits (73), Expect = 0.41 Identities = 16/53 (30%), Positives = 22/53 (41%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R C AP C+KC + GH CP + G Sbjct: 394 CWNCGKEGHSARQC---RAPRRQG---------CWKCGKAGHVMAKCPERQAG 434
>GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 521 Score = 32.7 bits (73), Expect = 0.41 Identities = 16/53 (30%), Positives = 22/53 (41%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R C AP C+KC + GH CP + G Sbjct: 391 CWNCGKEGHSARQC---RAPRRQG---------CWKCGKTGHVMAKCPERQAG 431
>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) Length = 1790 Score = 32.3 bits (72), Expect = 0.54 Identities = 8/18 (44%), Positives = 14/18 (77%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQG 256 C++C +PGH+ ++CP G Sbjct: 162 CFRCGKPGHYIKNCPTNG 179 Score = 30.8 bits (68), Expect = 1.6 Identities = 8/15 (53%), Positives = 13/15 (86%) Frame = -3 Query: 408 CFKCNQPGHFSRDCP 364 CF+C +PGH+ ++CP Sbjct: 162 CFRCGKPGHYIKNCP 176
>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) (Retinoblastoma-binding Q protein 1) (Protein RBQ-1) Length = 1792 Score = 32.3 bits (72), Expect = 0.54 Identities = 8/18 (44%), Positives = 14/18 (77%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQG 256 C++C +PGH+ ++CP G Sbjct: 161 CFRCGKPGHYIKNCPTNG 178 Score = 30.8 bits (68), Expect = 1.6 Identities = 8/15 (53%), Positives = 13/15 (86%) Frame = -3 Query: 408 CFKCNQPGHFSRDCP 364 CF+C +PGH+ ++CP Sbjct: 161 CFRCGKPGHYIKNCP 175
>GAG_HV1EL (P04592) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 32.3 bits (72), Expect = 0.54 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C++C + GH +DC Sbjct: 392 CFNCGKEGHIAKNC---RAPRKKG---------CWRCGKEGHQLKDC 426
>POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1436 Score = 32.3 bits (72), Expect = 0.54 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C++C + GH +DC Sbjct: 393 CFNCGKEGHIAKNC---RAPRKKG---------CWRCGREGHQMKDC 427
>COAT_FMVD (P09519) Probable coat protein| Length = 489 Score = 32.3 bits (72), Expect = 0.54 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Frame = -3 Query: 390 PG-HFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQER-QMYVNGAA 217 PG +FS+ P + P G C+ C + GH+A +CP + QE+ ++ ++G Sbjct: 389 PGKYFSKKKPEKFCPQGRK------KCRCWICTEEGHYANECPNRKSHQEKVKILIHGMN 442 Query: 216 SGGYN-RQSYVGS 181 G Y +Y G+ Sbjct: 443 EGYYPLEDAYTGN 455
>POL_HV1EL (P04589) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 32.3 bits (72), Expect = 0.54 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C++C + GH +DC Sbjct: 392 CFNCGKEGHIAKNC---RAPRKKG---------CWRCGKEGHQLKDC 426
>GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 501 Score = 32.3 bits (72), Expect = 0.54 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 CF C + GH +++C AP C++C + GH +DC Sbjct: 393 CFNCGKEGHIAKNC---RAPRKKG---------CWRCGREGHQMKDC 427
>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7| Length = 542 Score = 32.3 bits (72), Expect = 0.54 Identities = 14/50 (28%), Positives = 22/50 (44%) Frame = -3 Query: 411 LCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPA 262 +C C++ GH S++CP C+ C++ GH CPA Sbjct: 241 ICRNCDKRGHLSKNCPLP-----------RKVRRCFLCSRRGHLLYSCPA 279 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 12/71 (16%) Frame = -3 Query: 408 CFKCNQPGHFSRDC------------PGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCP 265 C +C+ GH++ C PG + +A CY C Q GH+ +CP Sbjct: 305 CDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSA-LAYCYHCAQKGHYGHECP 363 Query: 264 AQGVGQERQMY 232 ER++Y Sbjct: 364 ------EREVY 368
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 32.0 bits (71), Expect = 0.70 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGG 328 C++C + GH+S++CP YGS+ GG Sbjct: 170 CYRCGRSGHWSKECP---RLYGSAGGG 193 Score = 31.6 bits (70), Expect = 0.91 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%) Frame = -3 Query: 309 CYKCNQPGHFARDCP----AQGVGQERQMYVNGAASGGYNRQSY 190 CY+C + GH++++CP + G G+E + ++GGY + Y Sbjct: 170 CYRCGRSGHWSKECPRLYGSAGGGREPP---SPLSAGGYRDRMY 210
>TIE1_HUMAN (P35590) Tyrosine-protein kinase receptor Tie-1 precursor (EC| 2.7.10.1) Length = 1138 Score = 32.0 bits (71), Expect = 0.70 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 14/64 (21%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAA--------------PYGSSVGGNANTGLCYKCNQPGHFARD 271 C + + G F + C Q PYG S G C + PGHF D Sbjct: 255 CEQACREGRFGQSCQEQCPGISGCRGLTFCLPDPYGCSCGSGWRGSQCQEACAPGHFGAD 314 Query: 270 CPAQ 259 C Q Sbjct: 315 CRLQ 318
>GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 441 Score = 32.0 bits (71), Expect = 0.70 Identities = 13/53 (24%), Positives = 21/53 (39%) Frame = -3 Query: 426 NASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 N C+ C +PGH +R C +C+ C + GH ++C Sbjct: 375 NGQPQRCYNCGKPGHQARQC--------------RQGIICHNCGKRGHMQKEC 413 Score = 31.6 bits (70), Expect = 0.91 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -3 Query: 330 GNANTGLCYKCNQPGHFARDCPAQGV 253 GN CY C +PGH AR C QG+ Sbjct: 374 GNGQPQRCYNCGKPGHQARQC-RQGI 398
>GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 622 Score = 32.0 bits (71), Expect = 0.70 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -3 Query: 345 GSSVGGNANT--GLCYKCNQPGHFARDCPAQGVGQERQMYVNGA 220 G ++GG T CY C Q GH R CP G +Q +N A Sbjct: 578 GLTLGGQVRTFGKKCYNCGQIGHLKRSCP----GLNKQNIINQA 617 Score = 29.3 bits (64), Expect = 4.5 Identities = 9/16 (56%), Positives = 10/16 (62%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPG 361 C+ C Q GH R CPG Sbjct: 592 CYNCGQIGHLKRSCPG 607
>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)| Length = 4289 Score = 31.6 bits (70), Expect = 0.91 Identities = 19/50 (38%), Positives = 25/50 (50%) Frame = -3 Query: 417 SGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 +G C CN PG+ DC ++ P G S G G C C+ PG+ DC Sbjct: 292 NGRCV-CN-PGYTGEDCGVRSCPRGCSQRGRCKDGRCV-CD-PGYTGEDC 337 Score = 31.6 bits (70), Expect = 0.91 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = -3 Query: 390 PGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 PG+ DC ++ P G S G G C CN PG+ DC Sbjct: 268 PGYTGDDCGMRSCPRGCSQRGRCENGRCV-CN-PGYTGEDC 306 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -3 Query: 390 PGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDC 268 PG+ DC ++ P+ GG G C C PG+ DC Sbjct: 330 PGYTGEDCGTRSCPWDCGEGGRCVDGRCV-C-WPGYTGEDC 368
>GAG_SIVS4 (P12496) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 507 Score = 31.6 bits (70), Expect = 0.91 Identities = 15/53 (28%), Positives = 22/53 (41%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH ++ C AP C+KC + GH CP + G Sbjct: 394 CWNCGKEGHSAKQC---RAPRRQG---------CWKCGKTGHVMAKCPERQAG 434
>LAMB1_CHICK (Q01635) Laminin beta-1 chain (Laminin beta-1-1 chain) (Fragment)| Length = 303 Score = 31.2 bits (69), Expect = 1.2 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = -3 Query: 435 PAANASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKC 298 PA +S C KCN GH S C A Y ++ GN + G+C C Sbjct: 255 PAEGRNSNACKKCNCNGH-STQCHFDMAVYMAT--GNTSGGVCDDC 297
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 30.8 bits (68), Expect = 1.6 Identities = 8/21 (38%), Positives = 15/21 (71%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVGQ 247 CY+C + GH++++CP G+ Sbjct: 162 CYRCGKEGHWSKECPVDRTGR 182 Score = 29.3 bits (64), Expect = 4.5 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 435 PAANASSGLCFKCNQPGHFSRDCP 364 P SG C++C + GH+S++CP Sbjct: 154 PGMGDQSG-CYRCGKEGHWSKECP 176
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 30.8 bits (68), Expect = 1.6 Identities = 8/21 (38%), Positives = 15/21 (71%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVGQ 247 CY+C + GH++++CP G+ Sbjct: 162 CYRCGKEGHWSKECPVDRTGR 182 Score = 29.3 bits (64), Expect = 4.5 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 435 PAANASSGLCFKCNQPGHFSRDCP 364 P SG C++C + GH+S++CP Sbjct: 154 PGMGDQSG-CYRCGKEGHWSKECP 176
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 30.8 bits (68), Expect = 1.6 Identities = 8/21 (38%), Positives = 15/21 (71%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVGQ 247 CY+C + GH++++CP G+ Sbjct: 162 CYRCGKEGHWSKECPVDRTGR 182 Score = 29.3 bits (64), Expect = 4.5 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 435 PAANASSGLCFKCNQPGHFSRDCP 364 P SG C++C + GH+S++CP Sbjct: 154 PGMGDQSG-CYRCGKEGHWSKECP 176
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 30.8 bits (68), Expect = 1.6 Identities = 8/21 (38%), Positives = 15/21 (71%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVGQ 247 CY+C + GH++++CP G+ Sbjct: 162 CYRCGKEGHWSKECPVDRTGR 182 Score = 29.3 bits (64), Expect = 4.5 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 435 PAANASSGLCFKCNQPGHFSRDCP 364 P SG C++C + GH+S++CP Sbjct: 154 PGMGDQSG-CYRCGKEGHWSKECP 176
>TIE1_MOUSE (Q06806) Tyrosine-protein kinase receptor Tie-1 precursor (EC| 2.7.10.1) Length = 1134 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 14/64 (21%) Frame = -3 Query: 408 CFKCNQPGHFSRDC----PGQAA----------PYGSSVGGNANTGLCYKCNQPGHFARD 271 C + + G F + C PG A PYG S G C + P HF D Sbjct: 253 CEQACREGRFGQSCQEQCPGTAGCRGLTFCLPDPYGCSCGSGWRGSQCQEACAPDHFGAD 312 Query: 270 CPAQ 259 C Q Sbjct: 313 CRLQ 316
>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 899 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 6/58 (10%) Frame = -3 Query: 393 QPGHFSRDCPGQAAPY------GSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQ 238 Q F R P AP GS N N CY C GH+A+DC + +Q Sbjct: 821 QMAGFGRFYPVYPAPNVVANTSGSGPKKNGNVS-CYNCGVSGHYAQDCKQSSMEANQQ 877
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 30.0 bits (66), Expect = 2.7 Identities = 8/21 (38%), Positives = 15/21 (71%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVGQ 247 CY+C + GH++++CP G+ Sbjct: 162 CYRCGKEGHWSKECPVDRSGR 182 Score = 29.3 bits (64), Expect = 4.5 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 435 PAANASSGLCFKCNQPGHFSRDCP 364 P SG C++C + GH+S++CP Sbjct: 154 PGMGDQSG-CYRCGKEGHWSKECP 176
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 29.6 bits (65), Expect = 3.5 Identities = 8/21 (38%), Positives = 15/21 (71%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVGQ 247 CY+C + GH++++CP G+ Sbjct: 162 CYRCGKEGHWSKECPIDRSGR 182 Score = 29.3 bits (64), Expect = 4.5 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 435 PAANASSGLCFKCNQPGHFSRDCP 364 P SG C++C + GH+S++CP Sbjct: 154 PGMGDQSG-CYRCGKEGHWSKECP 176
>POL_HV2NZ (P05962) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1460 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R +AP C+KC + GH +CP + G Sbjct: 388 CWNCGKEGHSARQW---SAPRRQG---------CWKCGKSGHVMANCPDRQAG 428
>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 1168 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = -3 Query: 345 GSSVGGNANTGLCYKCNQPGHFARDCPAQGVGQERQ 238 GS N N CY C GH+A+DC + +Q Sbjct: 1112 GSGPKKNGNVS-CYNCGVSGHYAQDCKQSSMEANQQ 1146
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 29.6 bits (65), Expect = 3.5 Identities = 8/21 (38%), Positives = 15/21 (71%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVGQ 247 CY+C + GH++++CP G+ Sbjct: 162 CYRCGKEGHWSKECPIDRSGR 182 Score = 29.3 bits (64), Expect = 4.5 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 435 PAANASSGLCFKCNQPGHFSRDCP 364 P SG C++C + GH+S++CP Sbjct: 154 PGMGDQSG-CYRCGKEGHWSKECP 176
>UNC52_CAEEL (Q06561) Basement membrane proteoglycan precursor (Perlecan homolog)| (Uncoordinated protein 52) Length = 3375 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/36 (41%), Positives = 16/36 (44%) Frame = -3 Query: 390 PGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGH 283 PG+ C AP S GG GLC KC GH Sbjct: 926 PGYVGTSCE-DCAPGYSRTGGGLYLGLCEKCECNGH 960
>GAG_HV2NZ (P05891) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 518 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R +AP C+KC + GH +CP + G Sbjct: 388 CWNCGKEGHSARQW---SAPRRQG---------CWKCGKSGHVMANCPDRQAG 428
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = -3 Query: 321 NTGLCYKCNQPGHFARDCPAQGVG 250 NT +C KC GH A DC Q G Sbjct: 275 NTTVCTKCGGAGHIASDCKFQRPG 298
>S12A3_RAT (P55018) Solute carrier family 12 member 3 (Thiazide-sensitive| sodium-chloride cotransporter) (Na-Cl symporter) Length = 1002 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +3 Query: 180 SYQHRIACCILLMRRHSHTSGAPGQHPAPDSLSQSDQADYICSTDQ 317 ++ CI+ MR + S A H AP++L Q +Q I ++Q Sbjct: 762 AFDFNYGVCIMRMREGLNVSEALQTHTAPEALVQEEQTSTIFQSEQ 807
>CDA_MUCRO (P50325) Chitin deacetylase precursor (EC 3.5.1.41)| Length = 421 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +2 Query: 185 PT*DCLLYPPDAAPFTYIWRSWPT 256 PT +C Y PDA+ FT+ WP+ Sbjct: 53 PTQECAYYTPDASLFTFNASEWPS 76
>TIE1_BOVIN (Q06805) Tyrosine-protein kinase receptor Tie-1 precursor (EC| 2.7.10.1) Length = 1136 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 14/64 (21%) Frame = -3 Query: 408 CFKCNQPGHFSRDC----PGQAA----------PYGSSVGGNANTGLCYKCNQPGHFARD 271 C + + G F + C PG + PYG S G C + PG F D Sbjct: 253 CEQACREGRFGQSCQEQCPGTSGCRGLTFCLPDPYGCSCGSGWRGSQCQEACAPGRFGAD 312 Query: 270 CPAQ 259 C Q Sbjct: 313 CHLQ 316
>YK61_CAEEL (P34340) Putative cuticle collagen C29E4.1| Length = 305 Score = 29.3 bits (64), Expect = 4.5 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 7/79 (8%) Frame = -3 Query: 414 GLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARD-----CPAQGVG 250 GL K +PG + P A S G +A G K +PG +D CPA+ Sbjct: 223 GLPGKHGEPGQDGEEGPKGAPGTPGSNGRDAYPGQPGKAGEPGAVGKDANYCPCPARRDS 282 Query: 249 QERQMYVNGAAS--GGYNR 199 + ++ AAS GGY + Sbjct: 283 KTESVHEPPAASQNGGYRK 301
>GAG_SIVM1 (P05894) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 506 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/53 (28%), Positives = 21/53 (39%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R C AP C+KC + H CP + G Sbjct: 393 CWNCGKEGHSARQC---RAPRRQG---------CWKCGKMDHVMAKCPNRQAG 433
>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) Length = 639 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = -3 Query: 321 NTGLCYKCNQPGHFARDCPAQGVG 250 NT +C KC GH A DC Q G Sbjct: 275 NTTVCTKCGGAGHIASDCKFQRPG 298
>GAG_SIVMK (P05893) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 506 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/53 (28%), Positives = 21/53 (39%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCPAQGVG 250 C+ C + GH +R C AP C+KC + H CP + G Sbjct: 393 CWNCGKEGHSARQC---RAPRRQR---------CWKCGKMDHVMAKCPDRQAG 433
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6| Length = 1268 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -3 Query: 408 CFKCNQPGHFSRDCPGQAAPYGSSVGGN 325 CF CN+ GH++ +C ++ P + GGN Sbjct: 241 CFYCNKKGHYATNC--RSNPKTGNQGGN 266
>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix| protein p15; RNA-binding phosphoprotein p12; Capsid protein p30; Nucleocapsid protein p10] Length = 538 Score = 28.5 bits (62), Expect = 7.7 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVG 250 C C + GH+ARDCP + G Sbjct: 504 CAYCKEKGHWARDCPKKPRG 523
>GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains: Matrix| protein p15; RNA-binding phosphoprotein p12; Capsid protein p30; Nucleocapsid protein p10] Length = 537 Score = 28.5 bits (62), Expect = 7.7 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVG 250 C C + GH+ARDCP + G Sbjct: 503 CAYCKEKGHWARDCPKKPRG 522
>GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains: Matrix| protein p15; RNA-binding phosphoprotein p12; Capsid protein p30; Nucleocapsid protein p10] Length = 537 Score = 28.5 bits (62), Expect = 7.7 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 309 CYKCNQPGHFARDCPAQGVG 250 C C + GH+ARDCP + G Sbjct: 503 CAYCKEKGHWARDCPKKPRG 522
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III| Length = 2186 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/52 (26%), Positives = 20/52 (38%) Frame = -3 Query: 420 SSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYKCNQPGHFARDCP 265 +S C +C Q G C C++CN+ GH A +CP Sbjct: 566 ASQKCDECQQSGWHMASC------------FKLKNRACFRCNEMGHIAWNCP 605 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,438,420 Number of Sequences: 219361 Number of extensions: 1357226 Number of successful extensions: 4464 Number of sequences better than 10.0: 163 Number of HSP's better than 10.0 without gapping: 3734 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4226 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
