ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome... 78 3e-11
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
3dbj|AK073598.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
4gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 42 1.5
5gb|AC026124.35| Homo sapiens 12 BAC RP11-305O6 (Roswell Park Can... 42 1.5
6gb|AC091491.3| Homo sapiens chromosome 3 clone RP11-15F1 map 3p,... 42 1.5
7gb|AC012597.24|AC012597 Homo sapiens 12 BAC RP11-47G13 (Roswell ... 42 1.5
8ref|NM_106209.1| Arabidopsis thaliana nucleic acid binding AT1G7... 40 5.9
9gb|AY788996.1| Pan troglodytes cyclin B1 gene, promoter region a... 40 5.9
10gb|AY788992.1| Pongo pygmaeus cyclin B1 gene, promoter region an... 40 5.9
11gb|AC009377.7| Drosophila melanogaster 3L BAC RP98-26P20 (Roswel... 40 5.9
12gb|BT005709.1| Arabidopsis thaliana clone U50844 putative DNA-bi... 40 5.9
13gb|AC108733.4| Homo sapiens 3 BAC RP11-789F5 (Roswell Park Cance... 40 5.9
14gb|AY085039.1| Arabidopsis thaliana clone 125348 mRNA, complete ... 40 5.9
15gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis thaliana... 40 5.9
16dbj|AK176626.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.9
17dbj|AK176616.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.9
18dbj|AK176516.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.9
19dbj|AK176208.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.9
20dbj|AK175841.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.9
21dbj|AK175304.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.9
22dbj|AK175269.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.9
23dbj|AK175193.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.9
24dbj|AK118306.1| Arabidopsis thaliana At1g75560 mRNA for putative... 40 5.9
25emb|AJ323481.1|HSA323481 Homo sapiens genomic sequence surroundi... 40 5.9
26gb|AE003517.3| Drosophila melanogaster chromosome 3L, section 68... 40 5.9
27emb|AL591584.14| Mouse DNA sequence from clone RP23-335N12 on ch... 40 5.9
28dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 40 5.9 
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04,
             complete sequence
          Length = 176678

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 42/43 (97%)
 Strand = Plus / Minus

                                                        
Query: 363   ctggacagtctctagaaaagtgcccaggctggttacatttgaa 405
             ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 83516 ctggacagtctctagaaaagtgcccaggctgtttacatttgaa 83474



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 362   cctggacagtctctagaaaagtgcccaggctggttacatttgaa 405
             |||||||| |||||||  |||||||||||||| |||||||||||
Sbjct: 83586 cctggacaatctctagcgaagtgcccaggctgtttacatttgaa 83543



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 362   cctggacagtctctagaaaagtgcccaggctggttacatttg 403
             |||||||||||||||| | ||||||| ||||| |||||||||
Sbjct: 83448 cctggacagtctctagcatagtgcccgggctgtttacatttg 83407



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 266   ggacagtctctcgcaaagtgaccaggctgattacatttg 304
             ||||||||||| | |||||| |||||||| |||||||||
Sbjct: 83514 ggacagtctctagaaaagtgcccaggctgtttacatttg 83476



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 266   ggacagtctctcgcaaagtgaccaggctgattacatttgta 306
             ||||||||||| ||| |||| || ||||| |||||||||||
Sbjct: 83445 ggacagtctctagcatagtgcccgggctgtttacatttgta 83405
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 42/43 (97%)
 Strand = Plus / Minus

                                                         
Query: 363    ctggacagtctctagaaaagtgcccaggctggttacatttgaa 405
              ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 566117 ctggacagtctctagaaaagtgcccaggctgtttacatttgaa 566075



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                          
Query: 362    cctggacagtctctagaaaagtgcccaggctggttacatttgaa 405
              |||||||| |||||||  |||||||||||||| |||||||||||
Sbjct: 566187 cctggacaatctctagcgaagtgcccaggctgtttacatttgaa 566144



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                        
Query: 362    cctggacagtctctagaaaagtgcccaggctggttacatttg 403
              |||||||||||||||| | ||||||| ||||| |||||||||
Sbjct: 566049 cctggacagtctctagcatagtgcccgggctgtttacatttg 566008



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 266    ggacagtctctcgcaaagtgaccaggctgattacatttg 304
              ||||||||||| | |||||| |||||||| |||||||||
Sbjct: 566115 ggacagtctctagaaaagtgcccaggctgtttacatttg 566077



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 266    ggacagtctctcgcaaagtgaccaggctgattacatttgta 306
              ||||||||||| ||| |||| || ||||| |||||||||||
Sbjct: 566046 ggacagtctctagcatagtgcccgggctgtttacatttgta 566006
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>dbj|AK073598.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033047G19, full
            insert sequence
          Length = 3170

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 42/43 (97%)
 Strand = Plus / Minus

                                                       
Query: 363  ctggacagtctctagaaaagtgcccaggctggttacatttgaa 405
            ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2804 ctggacagtctctagaaaagtgcccaggctgtttacatttgaa 2762



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 362  cctggacagtctctagaaaagtgcccaggctggttacatttgaa 405
            |||||||| |||||||  |||||||||||||| |||||||||||
Sbjct: 2874 cctggacaatctctagcgaagtgcccaggctgtttacatttgaa 2831



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 362  cctggacagtctctagaaaagtgcccaggctggttacatttg 403
            |||||||||||||||| | ||||||| ||||| |||||||||
Sbjct: 2736 cctggacagtctctagcatagtgcccgggctgtttacatttg 2695



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 266  ggacagtctctcgcaaagtgaccaggctgattacatttg 304
            ||||||||||| | |||||| |||||||| |||||||||
Sbjct: 2802 ggacagtctctagaaaagtgcccaggctgtttacatttg 2764



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 266  ggacagtctctcgcaaagtgaccaggctgattacatttgta 306
            ||||||||||| ||| |||| || ||||| |||||||||||
Sbjct: 2733 ggacagtctctagcatagtgcccgggctgtttacatttgta 2693
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 417     agctggcattggcagctggag 437
               |||||||||||||||||||||
Sbjct: 2795064 agctggcattggcagctggag 2795044
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>gb|AC026124.35| Homo sapiens 12 BAC RP11-305O6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181835

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 105   tagtgcaaatacatgaaaata 125
             |||||||||||||||||||||
Sbjct: 52912 tagtgcaaatacatgaaaata 52932
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>gb|AC091491.3| Homo sapiens chromosome 3 clone RP11-15F1 map 3p, complete sequence
          Length = 152888

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    ctattgacaatcaagatcaag 104
             |||||||||||||||||||||
Sbjct: 79351 ctattgacaatcaagatcaag 79331
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>gb|AC012597.24|AC012597 Homo sapiens 12 BAC RP11-47G13 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 158591

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 105  tagtgcaaatacatgaaaata 125
            |||||||||||||||||||||
Sbjct: 5273 tagtgcaaatacatgaaaata 5253
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>ref|NM_106209.1| Arabidopsis thaliana nucleic acid binding AT1G75560 mRNA, complete
           cds
          Length = 1134

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 291 acagtctcttgcaaagtgaccagg 268
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>gb|AY788996.1| Pan troglodytes cyclin B1 gene, promoter region and partial cds
          Length = 1168

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 413 cctgagctggcattggcagc 432
           ||||||||||||||||||||
Sbjct: 733 cctgagctggcattggcagc 752
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>gb|AY788992.1| Pongo pygmaeus cyclin B1 gene, promoter region and partial cds
          Length = 1153

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 413 cctgagctggcattggcagc 432
           ||||||||||||||||||||
Sbjct: 718 cctgagctggcattggcagc 737
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>gb|AC009377.7| Drosophila melanogaster 3L BAC RP98-26P20 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 194308

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    tggcattggcagctggagga 439
              ||||||||||||||||||||
Sbjct: 161011 tggcattggcagctggagga 161030
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>gb|BT005709.1| Arabidopsis thaliana clone U50844 putative DNA-binding protein
           (At1g75560) mRNA, complete cds
          Length = 805

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 210 acagtctcttgcaaagtgaccagg 187
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>gb|AC108733.4| Homo sapiens 3 BAC RP11-789F5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 171184

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   acatgaaaatactacaagca 134
             ||||||||||||||||||||
Sbjct: 27334 acatgaaaatactacaagca 27353
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>gb|AY085039.1| Arabidopsis thaliana clone 125348 mRNA, complete sequence
          Length = 1134

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 291 acagtctcttgcaaagtgaccagg 268
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>gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence
          Length = 129547

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 268   acagtctctcgcaaagtgaccagg 291
             ||||||||| ||||||||||||||
Sbjct: 87249 acagtctcttgcaaagtgaccagg 87226
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>dbj|AK176626.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL25-16-K13
          Length = 1130

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 288 acagtctcttgcaaagtgaccagg 265
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>dbj|AK176616.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL25-14-E03
          Length = 1130

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 288 acagtctcttgcaaagtgaccagg 265
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>dbj|AK176516.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL25-03-D03
          Length = 1127

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 288 acagtctcttgcaaagtgaccagg 265
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>dbj|AK176208.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL23-08-K04
          Length = 1105

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 283 acagtctcttgcaaagtgaccagg 260
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>dbj|AK175841.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL22-45-I15
          Length = 1103

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 281 acagtctcttgcaaagtgaccagg 258
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>dbj|AK175304.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL21-73-M07
          Length = 1132

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 291 acagtctcttgcaaagtgaccagg 268
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>dbj|AK175269.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL21-70-F08
          Length = 1123

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 283 acagtctcttgcaaagtgaccagg 260
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>dbj|AK175193.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL21-61-A16
          Length = 1127

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 288 acagtctcttgcaaagtgaccagg 265
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>dbj|AK118306.1| Arabidopsis thaliana At1g75560 mRNA for putative DNA-binding
           protein, complete cds, clone: RAFL19-59-C19
          Length = 1114

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 281 acagtctcttgcaaagtgaccagg 258
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>emb|AJ323481.1|HSA323481 Homo sapiens genomic sequence surrounding NotI site, clone
           NB1-1039R
          Length = 923

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 328 gccgccaactgaagaaccgt 347
           ||||||||||||||||||||
Sbjct: 251 gccgccaactgaagaaccgt 270
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>gb|AE003517.3| Drosophila melanogaster chromosome 3L, section 68 of 83 of the complete
              sequence
          Length = 257692

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    tggcattggcagctggagga 439
              ||||||||||||||||||||
Sbjct: 220140 tggcattggcagctggagga 220159
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>emb|AL591584.14| Mouse DNA sequence from clone RP23-335N12 on chromosome 2, complete
              sequence
          Length = 177754

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    tggccaacaccctgcgccgg 267
              ||||||||||||||||||||
Sbjct: 138629 tggccaacaccctgcgccgg 138610
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>dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1750A9
          Length = 220495

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 347    tagggggcagcctgtcctggacag 370
              |||||||||||||| |||||||||
Sbjct: 149864 tagggggcagcctgccctggacag 149841


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,553,374
Number of Sequences: 3902068
Number of extensions: 4553374
Number of successful extensions: 71819
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71753
Number of HSP's gapped (non-prelim): 66
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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