ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YD49_SCHPO (Q10302) Hypothetical protein C22H10.09 in chromosome I 27 9.8

>YD49_SCHPO (Q10302) Hypothetical protein C22H10.09 in chromosome I|
          Length = 646

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 142 AKRPQKNSYPSCNPHLKK 195
           + RPQK ++P C  HLKK
Sbjct: 629 SSRPQKATFPLCTVHLKK 646


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,125,754
Number of Sequences: 219361
Number of extensions: 913086
Number of successful extensions: 2349
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2349
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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