ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GAC1_YEAST (P28006) Serine/threonine-protein phosphatase 1 regul... 32 0.79
2UL23_HCMVA (P16846) Hypothetical protein UL23 30 3.0
3ISPE_RHORT (Q2RXS7) 4-diphosphocytidyl-2-C-methyl-D-erythritol k... 29 3.9
4ZFPL1_HUMAN (O95159) Zinc finger protein-like 1 (Zinc-finger pro... 29 3.9
5DDFL1_HUMAN (Q8TDY4) Development and differentiation enhancing f... 28 6.7
6YMN3_PODAN (P15563) Hypothetical 49.1 kDa protein in ND3 intron 28 6.7
7ELTD1_RAT (Q9ESC1) EGF, latrophilin and seven transmembrane doma... 28 6.7
8PRSS8_HUMAN (Q16651) Prostasin precursor (EC 3.4.21.-) [Contains... 28 8.8
9HUT1_DEBHA (Q6BMV3) UDP-galactose transporter homolog 1 28 8.8
10ZFPL1_MOUSE (Q9DB43) Zinc finger protein-like 1 28 8.8

>GAC1_YEAST (P28006) Serine/threonine-protein phosphatase 1 regulatory subunit|
           GAC1
          Length = 793

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 414 PHGNFRAAFLTYHSLGKLVPQICSPDFSGG 325
           P+  F  A L  HSL  L+P+I +P F GG
Sbjct: 554 PNDTFTTANLFNHSLNSLMPEISTPSFFGG 583



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>UL23_HCMVA (P16846) Hypothetical protein UL23|
          Length = 284

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
 Frame = +1

Query: 73  SRLGRPGQEKLIIW-----MVVRRR--LLRSPRNDSPCHRQCASLQCPQPL 204
           SR  +PGQ   ++W     +V+RRR  L+R    D+   R  + L CP+PL
Sbjct: 21  SRPWKPGQRVALVWPKDRCLVIRRRWRLVRDEGRDA--QRLASYLCCPEPL 69



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>ISPE_RHORT (Q2RXS7) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 304

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/31 (51%), Positives = 16/31 (51%)
 Frame = -2

Query: 381 YHSLGKLVPQICSPDFSGGQDTRIVCPAVGL 289
           YH L  LV       FSG  DT I CPA GL
Sbjct: 33  YHDLDSLVV------FSGAHDTLIACPAEGL 57



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>ZFPL1_HUMAN (O95159) Zinc finger protein-like 1 (Zinc-finger protein MCG4)|
          Length = 310

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +1

Query: 103 LIIWMVVRRRLLRSPRNDSPCHRQCASLQCPQPLLHNFSATGLRGISTSQLKPLLTLV 276
           L  W  +  R  + PRN +P   QC S  C  P+   F  T L G   S L+  L  V
Sbjct: 73  LFHWACLNERAAQLPRNTAPAGYQCPS--CNGPI---FPPTNLAGPVASALREKLATV 125



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>DDFL1_HUMAN (Q8TDY4) Development and differentiation enhancing factor-like 1|
           (Protein up-regulated in liver cancer 1)
          Length = 903

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 22/60 (36%), Positives = 25/60 (41%)
 Frame = +3

Query: 216 QRHWASRNLDISAQTTAHPCHCNSAGQQLGKLFGCPDHH*NLGSIFVEPIYPVNGMSRTL 395
           Q HWAS  LDIS +T        +A  Q G+   CP            P  PV   SRTL
Sbjct: 718 QAHWASGRLDISNKTYETVASLGAATPQ-GESEDCP------------PPLPVKNSSRTL 764



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>YMN3_PODAN (P15563) Hypothetical 49.1 kDa protein in ND3 intron|
          Length = 433

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 211 NFSATGLRGISTSQLKPLLTLVIVTLQAN---SWANYSGVLTTTKIWGAYLWNQ 363
           N++   +  +  S     L L+I+++       W+NYSG++ + KI+ + + N+
Sbjct: 32  NWTGKSINWVKLSNSGKTLKLLILSINRKVNCGWSNYSGIVISQKIYESIIGNR 85



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>ELTD1_RAT (Q9ESC1) EGF, latrophilin and seven transmembrane domain-containing|
           protein 1 precursor (EGF-TM7-latrophilin-related
           protein) (ETL protein)
          Length = 738

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -2

Query: 414 PHGNFRAAFLTYHSLGKLVPQICSPDFSGGQDTRIVCPAVGLQSYNDKGEQ 262
           P+GN   AFL Y S+G L+    S DF            +G QS N KG++
Sbjct: 339 PNGNVIVAFLCYRSIGPLLSS--SDDF-----------LLGAQSDNSKGKE 376



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>PRSS8_HUMAN (Q16651) Prostasin precursor (EC 3.4.21.-) [Contains: Prostasin|
           light chain; Prostasin heavy chain]
          Length = 343

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 341 GEHICGTNLPSEWYVKNAARKFP 409
           G H+CG +L SE +V +AA  FP
Sbjct: 66  GVHVCGGSLVSEQWVLSAAHCFP 88



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>HUT1_DEBHA (Q6BMV3) UDP-galactose transporter homolog 1|
          Length = 354

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +2

Query: 185 FSVLSLSSTTSAPLGFEESRHL 250
           F ++SL+S+ S+PLG+E  +H+
Sbjct: 99  FVIISLTSSLSSPLGYESLKHV 120



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>ZFPL1_MOUSE (Q9DB43) Zinc finger protein-like 1|
          Length = 310

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +1

Query: 103 LIIWMVVRRRLLRSPRNDSPCHRQCASLQCPQPLLHNFSATGLRGISTSQLKPLLTLV 276
           L  W  +  R  + PRN +P   QC S  C  P+   F    L G   S L+  L  V
Sbjct: 73  LFHWACINERAAQLPRNTAPAGYQCPS--CNGPI---FPPANLAGPVASALREKLATV 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,641,984
Number of Sequences: 219361
Number of extensions: 1363575
Number of successful extensions: 3658
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3657
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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