ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IAA9_ARATH (Q38827) Auxin-responsive protein IAA9 (Indoleacetic ... 32 0.61
2PEL5_ARATH (Q9FXD8) Probable pectate lyase 5 precursor (EC 4.2.2.2) 30 2.3
3ALA1_CANAL (O13368) Agglutinin-like protein ALA1 precursor (Aggl... 28 5.1
4GCN5_SCHPO (Q9UUK2) Histone acetyltransferase gcn5 (EC 2.3.1.48) 28 8.8

>IAA9_ARATH (Q38827) Auxin-responsive protein IAA9 (Indoleacetic acid-induced|
           protein 9)
          Length = 338

 Score = 31.6 bits (70), Expect = 0.61
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 9   ENKASGFARSITDSRQINLELSSSRSTEKNWLIEETSVSK 128
           +N ASG  R  +D+     E  SS  TEKNW+  E + ++
Sbjct: 113 KNNASGNKRGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQ 152



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>PEL5_ARATH (Q9FXD8) Probable pectate lyase 5 precursor (EC 4.2.2.2)|
          Length = 408

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +2

Query: 59  QPRIVIQQINRKKLANRRNIGI 124
           +P +V+Q++N K  A+RRN+G+
Sbjct: 32  EPELVVQEVNEKINASRRNLGV 53



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>ALA1_CANAL (O13368) Agglutinin-like protein ALA1 precursor (Agglutinin-like|
           adhesin)
          Length = 1419

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 3   TFENKASGFARSITDSRQINLELSSSRSTEKNWLIEETSVSKQERIFYNSDTS 161
           + + ++S   +S+++S   + ELSSS S E +    +  VS       +SDTS
Sbjct: 764 SIDAQSSHLVQSVSNSISTSQELSSSSSEESSTFATDALVSSDASSILSSDTS 816



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>GCN5_SCHPO (Q9UUK2) Histone acetyltransferase gcn5 (EC 2.3.1.48)|
          Length = 454

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 57  INLELSSSRSTEKNWLIEETSVSKQERIFYNSDTS 161
           ++ ++SS R TEK  ++EE S   Q R+  N DT+
Sbjct: 95  VDFDISSVRVTEKPSVLEEKSGVIQFRVVSNDDTA 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,612,568
Number of Sequences: 219361
Number of extensions: 356141
Number of successful extensions: 1063
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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