ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC117629.16| Mus musculus chromosome 19, clone RP23-179C21, c... 40 2.3
2emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chr... 40 2.3
3emb|BX928758.9| Zebrafish DNA sequence from clone DKEY-206M15 in... 40 2.3
4emb|BX293555.7| Mouse DNA sequence from clone RP23-202M10 on chr... 38 9.0

>gb|AC117629.16| Mus musculus chromosome 19, clone RP23-179C21, complete sequence
          Length = 248718

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    tcctagtgaccatttgttaa 178
              ||||||||||||||||||||
Sbjct: 131357 tcctagtgaccatttgttaa 131376



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>emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chromosome 6q21-22.2
             Contains 2 putative novel genes, complete sequence
          Length = 141924

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    tctagacagatcaacctagaattg 71
             |||||||||||||||||| |||||
Sbjct: 42851 tctagacagatcaacctacaattg 42874



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>emb|BX928758.9| Zebrafish DNA sequence from clone DKEY-206M15 in linkage group 25,
             complete sequence
          Length = 199974

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    ataactgattctagacagat 58
             ||||||||||||||||||||
Sbjct: 99326 ataactgattctagacagat 99345



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>emb|BX293555.7| Mouse DNA sequence from clone RP23-202M10 on chromosome 2, complete
              sequence
          Length = 192154

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 98     ctggctaatagaagaaaca 116
              |||||||||||||||||||
Sbjct: 155997 ctggctaatagaagaaaca 156015


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,587,431
Number of Sequences: 3902068
Number of extensions: 1587431
Number of successful extensions: 120506
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120495
Number of HSP's gapped (non-prelim): 11
length of query: 183
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 161
effective length of database: 17,147,199,772
effective search space: 2760699163292
effective search space used: 2760699163292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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