Clone Name | rbastl11b08 |
---|---|
Clone Library Name | barley_pub |
>gb|AC109147.19| Mus musculus chromosome 8, clone RP23-341D16, complete sequence Length = 184600 Score = 42.1 bits (21), Expect = 0.26 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 tactggcttgctccttcttaaaact 83 ||||||||||||||| ||||||||| Sbjct: 87436 tactggcttgctcctccttaaaact 87460
>gb|AC017068.7| Homo sapiens BAC clone RP11-380D23 from 4, complete sequence Length = 201627 Score = 42.1 bits (21), Expect = 0.26 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 attgcattatataaatatata 42 ||||||||||||||||||||| Sbjct: 196277 attgcattatataaatatata 196257
>gb|AC167022.4| Mus musculus BAC clone RP23-183A4 from chromosome 8, complete sequence Length = 224462 Score = 42.1 bits (21), Expect = 0.26 Identities = 24/25 (96%) Strand = Plus / Minus Query: 59 tactggcttgctccttcttaaaact 83 ||||||||||||||| ||||||||| Sbjct: 28785 tactggcttgctcctccttaaaact 28761
>gb|AC132245.3| Mus musculus BAC clone RP24-420M8 from chromosome 13, complete sequence Length = 148654 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tactggcttgctccttctta 78 |||||||||||||||||||| Sbjct: 147960 tactggcttgctccttctta 147941
>gb|AC122862.4| Mus musculus BAC clone RP23-140O11 from 5, complete sequence Length = 192695 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tactggcttgctccttctta 78 |||||||||||||||||||| Sbjct: 118432 tactggcttgctccttctta 118451
>gb|AC123954.4| Mus musculus BAC clone RP23-249L6 from 13, complete sequence Length = 200727 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tactggcttgctccttctta 78 |||||||||||||||||||| Sbjct: 144110 tactggcttgctccttctta 144129
>gb|AC117635.6| Mus musculus chromosome 12, clone RP23-203G2, complete sequence Length = 270063 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 cttaaaactctggttgagta 94 |||||||||||||||||||| Sbjct: 98683 cttaaaactctggttgagta 98702
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 cattgcattatataaatata 40 |||||||||||||||||||| Sbjct: 63700 cattgcattatataaatata 63681
>dbj|AB232919.1| Oryzias latipes hox gene cluster, complete cds, contains hoxAb Length = 240727 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aacattgcattatataaata 38 |||||||||||||||||||| Sbjct: 176125 aacattgcattatataaata 176144
>emb|BX248102.11| Zebrafish DNA sequence from clone CH211-243F3, complete sequence Length = 150473 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ttgcattatataaatatata 42 |||||||||||||||||||| Sbjct: 37659 ttgcattatataaatatata 37640
>dbj|AP006074.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT40O02, TM0111b, complete sequence Length = 92724 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tgcattatataaatatatac 43 |||||||||||||||||||| Sbjct: 53354 tgcattatataaatatatac 53373
>emb|AL590418.16| Mouse DNA sequence from clone RP23-206I14 on chromosome 2, complete sequence Length = 175045 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aacttggctactggcttgct 70 |||||||||||||||||||| Sbjct: 79328 aacttggctactggcttgct 79309
>gb|AC150387.2| Branchiostoma floridae clone CH302-103N24, complete sequence Length = 193376 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 tgcattatataaatatata 42 ||||||||||||||||||| Sbjct: 132730 tgcattatataaatatata 132748
>gb|AC102447.11| Mus musculus chromosome 7, clone RP24-206D20, complete sequence Length = 176911 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 cttggctactggcttgctc 71 ||||||||||||||||||| Sbjct: 101828 cttggctactggcttgctc 101810
>gb|AC102509.6| Mus musculus chromosome 7, clone RP24-327G7, complete sequence Length = 186990 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 cttggctactggcttgctc 71 ||||||||||||||||||| Sbjct: 33906 cttggctactggcttgctc 33924
>gb|AC156634.2| Mus musculus BAC clone RP24-462L6 from chromosome 9, complete sequence Length = 112412 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 ctactggcttgctccttct 76 ||||||||||||||||||| Sbjct: 26163 ctactggcttgctccttct 26181
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 gcattatataaatatatac 43 ||||||||||||||||||| Sbjct: 733453 gcattatataaatatatac 733435
>gb|AC121097.6| Mus musculus chromosome 13, clone RP24-449F13, complete sequence Length = 217251 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ttggctactggcttgctcc 72 ||||||||||||||||||| Sbjct: 128654 ttggctactggcttgctcc 128672
>gb|AC121959.3| Mus musculus BAC clone RP24-247N18 from chromosome 3, complete sequence Length = 187416 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 cttggctactggcttgctc 71 ||||||||||||||||||| Sbjct: 81013 cttggctactggcttgctc 80995
>gb|AC129300.3| Mus musculus BAC clone RP24-427A8 from chromosome 7, complete sequence Length = 155123 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 tactggcttgctccttctt 77 ||||||||||||||||||| Sbjct: 132240 tactggcttgctccttctt 132258
>gb|AC124693.4| Mus musculus BAC clone RP24-167O14 from chromosome 19, complete sequence Length = 160363 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 ctactggcttgctccttct 76 ||||||||||||||||||| Sbjct: 71120 ctactggcttgctccttct 71102
>ref|XM_730884.1| Plasmodium chabaudi chabaudi hypothetical protein (PC406016.00.0) partial mRNA Length = 104 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 gcattatataaatatatac 43 ||||||||||||||||||| Sbjct: 79 gcattatataaatatatac 97
>gb|AC110200.9| Mus musculus chromosome 16, clone RP23-150K16, complete sequence Length = 179548 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 ttaacattgcattatataa 35 ||||||||||||||||||| Sbjct: 58819 ttaacattgcattatataa 58837
>gb|AC158569.7| Mus musculus chromosome 7, clone RP24-65P20, complete sequence Length = 177045 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 cttggctactggcttgctc 71 ||||||||||||||||||| Sbjct: 24983 cttggctactggcttgctc 25001
>emb|AL672311.26| Human DNA sequence from clone RP13-167H21 on chromosome X, complete sequence Length = 115998 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 attgcattatataaatata 40 ||||||||||||||||||| Sbjct: 5715 attgcattatataaatata 5733
>emb|AL357052.15| Human DNA sequence from clone RP11-686D16 on chromosome 6 Contains a novel gene and a ribosomal protein L5 (RPL5) (MSTP030) pseudogene, complete sequence Length = 106288 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 taacattgcattatataaatata 40 ||||||| ||||||||||||||| Sbjct: 103857 taacatttcattatataaatata 103879
>gb|AY338490.1| Homo sapiens glutathione reductase (GSR) gene, complete cds Length = 50564 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 ttgcattatataaatatat 41 ||||||||||||||||||| Sbjct: 42459 ttgcattatataaatatat 42441
>emb|CR391929.9| Zebrafish DNA sequence from clone DKEYP-86B5, complete sequence Length = 223724 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 ttaacattgcattatataa 35 ||||||||||||||||||| Sbjct: 207002 ttaacattgcattatataa 207020
>gb|AC128683.3| Homo sapiens 3 BAC RP11-229C17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 80670 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 cttaacattgcattatata 34 ||||||||||||||||||| Sbjct: 49064 cttaacattgcattatata 49082
>emb|BX539315.5| Zebrafish DNA sequence from clone DKEY-245E14, complete sequence Length = 172139 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 taacattgcattatataaatata 40 ||||||||||||| ||||||||| Sbjct: 129071 taacattgcattaaataaatata 129093
>emb|BX682552.9| Zebrafish DNA sequence from clone DKEY-120C6 in linkage group 3, complete sequence Length = 228044 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 ttaacattgcattatataa 35 ||||||||||||||||||| Sbjct: 167216 ttaacattgcattatataa 167234
>gb|AC146756.17| Medicago truncatula clone mth2-15l17, complete sequence Length = 120437 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 attgcattatataaatata 40 ||||||||||||||||||| Sbjct: 19289 attgcattatataaatata 19307
>gb|AC117513.4| Homo sapiens 3 BAC RP11-451B8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166960 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 20 acattgcattatataaatatata 42 ||||||||||||||| ||||||| Sbjct: 43465 acattgcattatatatatatata 43487
>gb|AC108749.11| Homo sapiens 3 BAC RP11-288B15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170796 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 20 acattgcattatataaatatata 42 ||||||||||||||| ||||||| Sbjct: 56247 acattgcattatatatatatata 56225
>gb|AC009314.4| Homo sapiens BAC clone RP11-465K4 from 8, complete sequence Length = 161788 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 ttgcattatataaatatat 41 ||||||||||||||||||| Sbjct: 152963 ttgcattatataaatatat 152945
>emb|BX510989.13| Zebrafish DNA sequence from clone CH211-76L23 in linkage group 3, complete sequence Length = 169229 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 aacattgcattatataaat 37 ||||||||||||||||||| Sbjct: 151009 aacattgcattatataaat 150991
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 gcattatataaatatatac 43 ||||||||||||||||||| Sbjct: 733451 gcattatataaatatatac 733433
>gb|AC010534.7|AC010534 Homo sapiens chromosome 16 clone RP11-259E8, complete sequence Length = 146385 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 tgcattatataaatatata 42 ||||||||||||||||||| Sbjct: 107422 tgcattatataaatatata 107440
>gb|AC015987.6| Homo sapiens chromosome 7 clone RP11-207O19, complete sequence Length = 181882 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 tgctccttcttaaaactct 85 ||||||||||||||||||| Sbjct: 15267 tgctccttcttaaaactct 15285
>gb|AC092337.3| Homo sapiens chromosome 16 clone RP11-21L1, complete sequence Length = 175994 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 tgcattatataaatatata 42 ||||||||||||||||||| Sbjct: 159792 tgcattatataaatatata 159810
>gb|AC012003.9| Homo sapiens BAC clone RP11-498P13 from 2, complete sequence Length = 195950 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 28 ttatataaatatatacgagggac 50 ||||||||| ||||||||||||| Sbjct: 173841 ttatataaaaatatacgagggac 173819
>gb|AC103959.18| Homo sapiens chromosome 8, clone GS1-211B7, complete sequence Length = 103584 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 ttgcattatataaatatat 41 ||||||||||||||||||| Sbjct: 102890 ttgcattatataaatatat 102908
>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10, complete sequence Length = 162132 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 gcattatataaatatatac 43 ||||||||||||||||||| Sbjct: 28998 gcattatataaatatatac 28980
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 gcattatataaatatatac 43 ||||||||||||||||||| Sbjct: 119334 gcattatataaatatatac 119316
>emb|BX004770.12| Zebrafish DNA sequence from clone DKEY-14K21 in linkage group 10, complete sequence Length = 231131 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tgcattatataaatatata 42 ||||||||||||||||||| Sbjct: 150724 tgcattatataaatatata 150706
>gb|AC102606.12| Mus musculus chromosome 7, clone RP23-390N24, complete sequence Length = 188836 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 cttggctactggcttgctc 71 ||||||||||||||||||| Sbjct: 35801 cttggctactggcttgctc 35783
>gb|AF228703.1|AF228703 Homo sapiens mitochondrial glutathione reductase and cytosolic glutathione reductase (GRD1) gene, complete cds, alternatively spliced Length = 52459 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 ttgcattatataaatatat 41 ||||||||||||||||||| Sbjct: 42078 ttgcattatataaatatat 42060
>dbj|AP004241.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-222B11, complete sequence Length = 152771 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 taacattgcattatataaatata 40 ||||||| ||||||||||||||| Sbjct: 119083 taacattccattatataaatata 119061
>emb|BX927393.12| Zebrafish DNA sequence from clone CH211-231B2 in linkage group 1, complete sequence Length = 152923 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 taacattgcattatataaatata 40 ||||||||||||| ||||||||| Sbjct: 112110 taacattgcattaaataaatata 112088
>gb|AC159900.3| Mus musculus BAC clone RP23-48H10 from chromosome 9, complete sequence Length = 194510 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 ctactggcttgctccttct 76 ||||||||||||||||||| Sbjct: 183822 ctactggcttgctccttct 183804
>emb|AL954850.12| Mouse DNA sequence from clone RP23-331B22 on chromosome X, complete sequence Length = 146713 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tgcattatataaatatata 42 ||||||||||||||||||| Sbjct: 115938 tgcattatataaatatata 115920
>gb|AC154216.1| Mus musculus BAC clone RP24-354I21 from 13, complete sequence Length = 209934 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 tgcattatataaatatata 42 ||||||||||||||||||| Sbjct: 100589 tgcattatataaatatata 100571
>gb|AC147437.2| Gallus gallus BAC clone CH261-80L21 from chromosome unknown, complete sequence Length = 221338 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 tatataaatatatacgagg 47 ||||||||||||||||||| Sbjct: 108665 tatataaatatatacgagg 108683
>emb|CT025575.12| Mouse DNA sequence from clone RP23-272A7 on chromosome 9, complete sequence Length = 232192 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 ctactggcttgctccttct 76 ||||||||||||||||||| Sbjct: 226418 ctactggcttgctccttct 226436
>emb|AL590415.7| Mouse DNA sequence from clone RP23-97B17 on chromosome 2, complete sequence Length = 146734 Score = 38.2 bits (19), Expect = 4.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 tgcattatataaatatata 42 ||||||||||||||||||| Sbjct: 132070 tgcattatataaatatata 132088
>emb|AL672130.14| Mouse DNA sequence from clone RP24-74N4 on chromosome 2, complete sequence Length = 60892 Score = 38.2 bits (19), Expect = 4.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 65 cttgctccttcttaaaactctgg 87 |||||||| |||||||||||||| Sbjct: 19668 cttgctccctcttaaaactctgg 19690 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,335,896 Number of Sequences: 3902068 Number of extensions: 1335896 Number of successful extensions: 218402 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 218062 Number of HSP's gapped (non-prelim): 340 length of query: 94 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 73 effective length of database: 17,151,101,840 effective search space: 1252030434320 effective search space used: 1252030434320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)