ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl11b07 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 65.9 bits (159), Expect = 2e-11 Identities = 30/34 (88%), Positives = 31/34 (91%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 PAKFPYMLLYPNTSDH G A GLTA+GIPNSISI Sbjct: 829 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 61.6 bits (148), Expect = 4e-10 Identities = 28/34 (82%), Positives = 31/34 (91%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 PA+FPYMLLYPNTSD TG A G+TA+GIPNSISI Sbjct: 833 PAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 59.3 bits (142), Expect = 2e-09 Identities = 26/34 (76%), Positives = 30/34 (88%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 PA FPY L++PNTSD+ G AEG+TARGIPNSISI Sbjct: 830 PANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 55.8 bits (133), Expect = 2e-08 Identities = 26/34 (76%), Positives = 27/34 (79%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 P FPY LLYPNTSD G A GL+ARGIPNSISI Sbjct: 837 PTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 52.0 bits (123), Expect = 4e-07 Identities = 26/35 (74%), Positives = 28/35 (80%), Gaps = 1/35 (2%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQ-AEGLTARGIPNSISI 261 P K PYMLLYPNTSD T + +GLTA GIPNSISI Sbjct: 843 PVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 42.4 bits (98), Expect = 3e-04 Identities = 22/34 (64%), Positives = 24/34 (70%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 PAK PY LLYP++ EGLT RGIPNSISI Sbjct: 826 PAKMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 41.6 bits (96), Expect = 5e-04 Identities = 21/34 (61%), Positives = 23/34 (67%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 P K PY LLYP++ EGLT RGIPNSISI Sbjct: 839 PVKMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 39.7 bits (91), Expect = 0.002 Identities = 20/34 (58%), Positives = 23/34 (67%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 P + PY LL+PN+ EGLT RGIPNSISI Sbjct: 839 PVQLPYTLLHPNS-------EGLTCRGIPNSISI 865
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 39.3 bits (90), Expect = 0.002 Identities = 20/34 (58%), Positives = 23/34 (67%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 P + PY LLYP++ EGLT RGIPNSISI Sbjct: 812 PVQLPYTLLYPSSE------EGLTFRGIPNSISI 839
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 39.3 bits (90), Expect = 0.002 Identities = 20/34 (58%), Positives = 23/34 (67%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 P + PY LLYP++ EGLT RGIPNSISI Sbjct: 834 PVEMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 38.1 bits (87), Expect = 0.005 Identities = 20/34 (58%), Positives = 21/34 (61%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 P K PY +L P D EGLT RGIPNSISI Sbjct: 834 PVKMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 37.4 bits (85), Expect = 0.009 Identities = 19/34 (55%), Positives = 23/34 (67%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 P + PY LL+P++ EGLT RGIPNSISI Sbjct: 837 PVQLPYTLLHPSSK------EGLTFRGIPNSISI 864
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 36.2 bits (82), Expect = 0.020 Identities = 19/34 (55%), Positives = 22/34 (64%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 P + PY LL P++ EGLT RGIPNSISI Sbjct: 830 PVQMPYTLLLPSSK------EGLTFRGIPNSISI 857
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 35.8 bits (81), Expect = 0.026 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 P PY LL+P + EGLT +GIPNS+SI Sbjct: 832 PVNVPYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 34.3 bits (77), Expect = 0.077 Identities = 18/34 (52%), Positives = 20/34 (58%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 P + PY LL H EGLT +GIPNSISI Sbjct: 837 PVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 33.5 bits (75), Expect = 0.13 Identities = 16/32 (50%), Positives = 21/32 (65%) Frame = -2 Query: 356 KFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 K PY LL+P++ G+T RGIPNS+SI Sbjct: 834 KMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 33.1 bits (74), Expect = 0.17 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 P PY LL+P + GLT +GIPNS+SI Sbjct: 833 PVNAPYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 33.1 bits (74), Expect = 0.17 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 P PY LL+P + GLT +GIPNS+SI Sbjct: 834 PVNAPYTLLFPTSEG------GLTGKGIPNSVSI 861
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 31.2 bits (69), Expect = 0.65 Identities = 16/28 (57%), Positives = 18/28 (64%) Frame = -2 Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGI 279 PAK PY LLYP++ EGLT RGI Sbjct: 720 PAKMPYTLLYPSSE------EGLTFRGI 741
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 31.2 bits (69), Expect = 0.65 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = +3 Query: 240 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 359 T DVL DG VR G +G+SR+V V EQH ELG Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -1 Query: 363 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 274 A P H A P L H +G HRQGHPE Sbjct: 231 APDAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -1 Query: 363 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 274 A P H A P L H +G HRQGHPE Sbjct: 231 APNAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -2 Query: 350 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 PY LL P++ G+T RG+PNSISI Sbjct: 895 PYELLAPSSPP------GVTCRGVPNSISI 918
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 28.9 bits (63), Expect = 3.2 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = -2 Query: 344 MLLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVC 180 M PN + HT Q AE A+ +P S S R L LC P + P AC Sbjct: 55 MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114 Query: 179 VCDRELCRCMNN 144 +C+ CM N Sbjct: 115 LCETVRGECMEN 126
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/30 (53%), Positives = 18/30 (60%) Frame = -2 Query: 350 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 PY LL P + G+T RGIPNSISI Sbjct: 873 PYELLKPFSEP------GVTGRGIPNSISI 896
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -2 Query: 188 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 51 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758
>ALR1_SALTY (P0A1A3) Alanine racemase, biosynthetic (EC 5.1.1.1)| Length = 359 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +3 Query: 252 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 359 L S AVRD GEP+G GG WV + LG Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268
>ALR1_SALTI (P0A1A4) Alanine racemase, biosynthetic (EC 5.1.1.1)| Length = 359 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +3 Query: 252 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 359 L S AVRD GEP+G GG WV + LG Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -2 Query: 188 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 51 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756
>CB024_HUMAN (Q9BV87) Protein C2orf24| Length = 410 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -2 Query: 272 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACTTGLI 108 ++++ S V + L L C P P+L C E C +C+ + N +C G + Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303 Query: 107 GMRKL 93 G+R L Sbjct: 304 GLRSL 308
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -2 Query: 350 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 261 PY L+ P++ G+T RG+PNS++I Sbjct: 876 PYELMAPSSGP------GITCRGVPNSVTI 899
>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)| Length = 194 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 93 ELPHADQTRRARTLIALIIHAPAQLSV 173 ELP D TR +RTL L+ HAP + + Sbjct: 7 ELPAPDATRISRTLSYLLRHAPQTIGL 33
>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT| protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta) Length = 800 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = -1 Query: 294 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 208 HR EQH+ A+PSS+P F +LS+L Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,813,471 Number of Sequences: 219361 Number of extensions: 1110302 Number of successful extensions: 2841 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2737 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2827 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
