ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 66 2e-11
2LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) 62 4e-10
3LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... 59 2e-09
4LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase... 56 2e-08
5LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12) 52 4e-07
6LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94) 42 3e-04
7LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12) 42 5e-04
8LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2) 40 0.002
9LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1) 39 0.002
10LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12) 39 0.002
11LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12) 38 0.005
12LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12) 37 0.009
13LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3) 36 0.020
14LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12) 36 0.026
15LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12) 34 0.077
16LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12) 33 0.13
17LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12) 33 0.17
18LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12) 33 0.17
19LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment) 31 0.65
20SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline... 31 0.65
21SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP) 30 1.1
22SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP) 30 1.1
23LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12) 29 3.2
24FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3) 29 3.2
25LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC... 28 5.5
26NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 pr... 28 5.5
27ALR1_SALTY (P0A1A3) Alanine racemase, biosynthetic (EC 5.1.1.1) 28 5.5
28ALR1_SALTI (P0A1A4) Alanine racemase, biosynthetic (EC 5.1.1.1) 28 5.5
29NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 pr... 28 5.5
30CB024_HUMAN (Q9BV87) Protein C2orf24 28 7.2
31LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12) 27 9.4
32KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-) 27 9.4
33ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator... 27 9.4

>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 30/34 (88%), Positives = 31/34 (91%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           PAKFPYMLLYPNTSDH G A GLTA+GIPNSISI
Sbjct: 829 PAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862



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>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)|
          Length = 866

 Score = 61.6 bits (148), Expect = 4e-10
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           PA+FPYMLLYPNTSD TG A G+TA+GIPNSISI
Sbjct: 833 PAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866



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>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)|
          Length = 863

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 26/34 (76%), Positives = 30/34 (88%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           PA FPY L++PNTSD+ G AEG+TARGIPNSISI
Sbjct: 830 PANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863



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>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)|
          Length = 870

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 26/34 (76%), Positives = 27/34 (79%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           P  FPY LLYPNTSD  G A GL+ARGIPNSISI
Sbjct: 837 PTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870



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>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)|
          Length = 877

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 26/35 (74%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQ-AEGLTARGIPNSISI 261
           P K PYMLLYPNTSD T +  +GLTA GIPNSISI
Sbjct: 843 PVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877



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>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)|
          Length = 853

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 22/34 (64%), Positives = 24/34 (70%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           PAK PY LLYP++       EGLT RGIPNSISI
Sbjct: 826 PAKMPYTLLYPSSE------EGLTFRGIPNSISI 853



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>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)|
          Length = 866

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 21/34 (61%), Positives = 23/34 (67%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           P K PY LLYP++       EGLT RGIPNSISI
Sbjct: 839 PVKMPYTLLYPSSE------EGLTCRGIPNSISI 866



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>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)|
          Length = 865

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           P + PY LL+PN+       EGLT RGIPNSISI
Sbjct: 839 PVQLPYTLLHPNS-------EGLTCRGIPNSISI 865



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>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)|
          Length = 839

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           P + PY LLYP++       EGLT RGIPNSISI
Sbjct: 812 PVQLPYTLLYPSSE------EGLTFRGIPNSISI 839



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>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)|
          Length = 861

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           P + PY LLYP++       EGLT RGIPNSISI
Sbjct: 834 PVEMPYTLLYPSSK------EGLTFRGIPNSISI 861



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>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 20/34 (58%), Positives = 21/34 (61%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           P K PY +L P   D     EGLT RGIPNSISI
Sbjct: 834 PVKMPYTVLLPTCED-----EGLTFRGIPNSISI 862



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>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)|
          Length = 864

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           P + PY LL+P++       EGLT RGIPNSISI
Sbjct: 837 PVQLPYTLLHPSSK------EGLTFRGIPNSISI 864



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>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)|
          Length = 857

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 19/34 (55%), Positives = 22/34 (64%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           P + PY LL P++       EGLT RGIPNSISI
Sbjct: 830 PVQMPYTLLLPSSK------EGLTFRGIPNSISI 857



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>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)|
          Length = 859

 Score = 35.8 bits (81), Expect = 0.026
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           P   PY LL+P +       EGLT +GIPNS+SI
Sbjct: 832 PVNVPYTLLFPTSE------EGLTGKGIPNSVSI 859



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>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)|
          Length = 864

 Score = 34.3 bits (77), Expect = 0.077
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           P + PY LL      H    EGLT +GIPNSISI
Sbjct: 837 PVQLPYTLL------HRSSEEGLTFKGIPNSISI 864



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>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 859

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -2

Query: 356 KFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           K PY LL+P++        G+T RGIPNS+SI
Sbjct: 834 KMPYTLLFPSSEG------GVTGRGIPNSVSI 859



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>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)|
          Length = 860

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           P   PY LL+P +        GLT +GIPNS+SI
Sbjct: 833 PVNAPYTLLFPTSEG------GLTGKGIPNSVSI 860



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>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 861

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           P   PY LL+P +        GLT +GIPNS+SI
Sbjct: 834 PVNAPYTLLFPTSEG------GLTGKGIPNSVSI 861



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>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)|
          Length = 741

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = -2

Query: 362 PAKFPYMLLYPNTSDHTGQAEGLTARGI 279
           PAK PY LLYP++       EGLT RGI
Sbjct: 720 PAKMPYTLLYPSSE------EGLTFRGI 741



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>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA|
           ligase) (ProRS)
          Length = 582

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 20/40 (50%), Positives = 23/40 (57%)
 Frame = +3

Query: 240 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 359
           T DVL  DG  VR   G   +G+SR+V  V  EQH  ELG
Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476



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>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)|
          Length = 381

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 363 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 274
           A   P H A P  L  H   +G HRQGHPE
Sbjct: 231 APDAPTHPA-PPGLHHHHKHKGQHRQGHPE 259



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>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)|
          Length = 381

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 363 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 274
           A   P H A P  L  H   +G HRQGHPE
Sbjct: 231 APNAPTHPA-PPGLHHHHKHKGQHRQGHPE 259



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>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)|
          Length = 918

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 350 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           PY LL P++        G+T RG+PNSISI
Sbjct: 895 PYELLAPSSPP------GVTCRGVPNSISI 918



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>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)|
          Length = 581

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
 Frame = -2

Query: 344 MLLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVC 180
           M   PN + HT Q  AE   A+ +P   S  S   R      L  LC P +  P  AC  
Sbjct: 55  MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114

Query: 179 VCDRELCRCMNN 144
           +C+     CM N
Sbjct: 115 LCETVRGECMEN 126



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>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)|
           (LOX2:Hv:3)
          Length = 896

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -2

Query: 350 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           PY LL P +        G+T RGIPNSISI
Sbjct: 873 PYELLKPFSEP------GVTGRGIPNSISI 896



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>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (hN2) [Contains: Notch 2 extracellular truncation;
           Notch 2 intracellular domain]
          Length = 2471

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -2

Query: 188 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 51
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758



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>ALR1_SALTY (P0A1A3) Alanine racemase, biosynthetic (EC 5.1.1.1)|
          Length = 359

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 252 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 359
           L S   AVRD   GEP+G     GG WV +    LG
Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268



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>ALR1_SALTI (P0A1A4) Alanine racemase, biosynthetic (EC 5.1.1.1)|
          Length = 359

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 252 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 359
           L S   AVRD   GEP+G     GG WV +    LG
Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268



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>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (Motch B) [Contains: Notch 2 extracellular
           truncation; Notch 2 intracellular domain]
          Length = 2470

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -2

Query: 188 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 51
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756



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>CB024_HUMAN (Q9BV87) Protein C2orf24|
          Length = 410

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -2

Query: 272 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACTTGLI 108
           ++++ S  V  + L L C P    P+L     C  E C     +C+ +  N  +C  G +
Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303

Query: 107 GMRKL 93
           G+R L
Sbjct: 304 GLRSL 308



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>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)|
          Length = 899

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 350 PYMLLYPNTSDHTGQAEGLTARGIPNSISI 261
           PY L+ P++        G+T RG+PNS++I
Sbjct: 876 PYELMAPSSGP------GITCRGVPNSVTI 899



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>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)|
          Length = 194

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 93  ELPHADQTRRARTLIALIIHAPAQLSV 173
           ELP  D TR +RTL  L+ HAP  + +
Sbjct: 7   ELPAPDATRISRTLSYLLRHAPQTIGL 33



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>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT|
           protein) (Dioxin receptor, nuclear translocator)
           (Hypoxia-inducible factor 1 beta) (HIF-1 beta)
          Length = 800

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 294 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 208
           HR    EQH+    A+PSS+P  F  +LS+L
Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,813,471
Number of Sequences: 219361
Number of extensions: 1110302
Number of successful extensions: 2841
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 2737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2827
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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