ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl11b05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3534 Score = 121 bits (61), Expect = 2e-24 Identities = 145/173 (83%) Strand = Plus / Minus Query: 210 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 269 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 3092 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3033 Query: 270 gcttccatcttctgagacagggcatgctgtaacttttggatttcatccctctttttcctt 329 |||||||| ||||| ||||| || || || | |||||| ||||| || ||||||||||| Sbjct: 3032 gcttccattttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcctc 2973 Query: 330 agcttttcgagctccacttccgcatttagagccccttgaagctgaaggtatac 382 |||||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||| Sbjct: 2972 agcttttcaagctcaacttctgcattgagagctccttggagttgaaggtatac 2920
>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full insert sequence Length = 3587 Score = 121 bits (61), Expect = 2e-24 Identities = 145/173 (83%) Strand = Plus / Minus Query: 210 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 269 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 3304 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3245 Query: 270 gcttccatcttctgagacagggcatgctgtaacttttggatttcatccctctttttcctt 329 |||||||| ||||| ||||| || || || | |||||| ||||| || ||||||||||| Sbjct: 3244 gcttccattttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcctc 3185 Query: 330 agcttttcgagctccacttccgcatttagagccccttgaagctgaaggtatac 382 |||||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||| Sbjct: 3184 agcttttcaagctcaacttctgcattgagagctccttggagttgaaggtatac 3132
>dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full insert sequence Length = 4411 Score = 115 bits (58), Expect = 1e-22 Identities = 121/142 (85%) Strand = Plus / Minus Query: 246 ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatgctgtaacttt 305 |||||||||||| | |||||||| |||||||| ||||| || |||||||| || | |||| Sbjct: 4113 ggagccttctctttataaccggaagcttccattttctgtgatagggcatgttgcagcttt 4054 Query: 306 tggatttcatccctctttttccttagcttttcgagctccacttccgcatttagagcccct 365 || ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||| ||| Sbjct: 4053 tgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagagctcct 3994 Query: 366 tgaagctgaaggtatacggata 387 || || || |||||||| |||| Sbjct: 3993 tggagttggaggtatacagata 3972
>gb|AY109108.1| Zea mays PCO116815 mRNA sequence Length = 1041 Score = 81.8 bits (41), Expect = 2e-12 Identities = 176/221 (79%) Strand = Plus / Minus Query: 159 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttc 218 |||| |||||||||||| |||| ||||||| |||||||| || || |||||||||||| Sbjct: 801 tctaatttcttctcagcttcactgatgacctctagttgctccaacaaagcggtgagcttc 742 Query: 219 ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 278 |||||||||||||| || || || | ||||||||||| | || || || || ||||| Sbjct: 741 ctcatgtcctcctcctgtacgctctgtggagccttctcgcgatagccagaggcgtccatt 682 Query: 279 ttctgagacagggcatgctgtaacttttggatttcatccctctttttccttagcttttcg 338 ||||| | ||| |||| ||||| |||||| || ||||| | || ||| |||||||||| Sbjct: 681 ttctgcgccagtgcattctgtagcttttgaatctcatcttttttcttctttagcttttca 622 Query: 339 agctccacttccgcatttagagccccttgaagctgaaggta 379 | || | || ||||||| ||| ||||| ||||||||||| Sbjct: 621 cgttcagcgtctgcatttaaagctccttggagctgaaggta 581
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 77.8 bits (39), Expect = 2e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 301 acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| |||| Sbjct: 651915 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 651856 Query: 361 ccccttgaagctgaaggtatacggata 387 | ||||| || || |||||||| |||| Sbjct: 651855 ctccttggagttggaggtatacagata 651829 Score = 75.8 bits (38), Expect = 9e-11 Identities = 71/82 (86%) Strand = Plus / Minus Query: 301 acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| |||| Sbjct: 27542546 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 27542487 Query: 361 ccccttgaagctgaaggtatac 382 | ||||| || ||||||||||| Sbjct: 27542486 ctccttggagttgaaggtatac 27542465 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 210 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 269 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 27542742 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27542683 Query: 270 gcttccatcttctgagacag 289 |||||||| ||||| ||||| Sbjct: 27542682 gcttccattttctgtgacag 27542663 Score = 54.0 bits (27), Expect = 3e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 301 acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||||||| |||| ||||| |||||||||||||| |||| | || ||||||| | Sbjct: 12395975 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 12396034 Query: 361 ccccttgaagctgaaggta 379 | |||||||||| |||||| Sbjct: 12396035 ctccttgaagcttaaggta 12396053 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 246 ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 295 |||||||||||| | |||||||| |||||||| ||||| || |||||||| Sbjct: 652074 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652025 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 156 gcatctagtttcttctcagcctcac 180 |||||||||||||||||||| |||| Sbjct: 12395727 gcatctagtttcttctcagcttcac 12395751
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 77.8 bits (39), Expect = 2e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 301 acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| |||| Sbjct: 651913 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 651854 Query: 361 ccccttgaagctgaaggtatacggata 387 | ||||| || || |||||||| |||| Sbjct: 651853 ctccttggagttggaggtatacagata 651827 Score = 75.8 bits (38), Expect = 9e-11 Identities = 71/82 (86%) Strand = Plus / Minus Query: 301 acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| |||| Sbjct: 27633869 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 27633810 Query: 361 ccccttgaagctgaaggtatac 382 | ||||| || ||||||||||| Sbjct: 27633809 ctccttggagttgaaggtatac 27633788 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 210 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 269 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 27634065 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27634006 Query: 270 gcttccatcttctgagacag 289 |||||||| ||||| ||||| Sbjct: 27634005 gcttccattttctgtgacag 27633986 Score = 54.0 bits (27), Expect = 3e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 301 acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||||||| |||| ||||| |||||||||||||| |||| | || ||||||| | Sbjct: 12392738 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 12392797 Query: 361 ccccttgaagctgaaggta 379 | |||||||||| |||||| Sbjct: 12392798 ctccttgaagcttaaggta 12392816 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 246 ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 295 |||||||||||| | |||||||| |||||||| ||||| || |||||||| Sbjct: 652072 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652023 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 156 gcatctagtttcttctcagcctcac 180 |||||||||||||||||||| |||| Sbjct: 12392490 gcatctagtttcttctcagcttcac 12392514
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 77.8 bits (39), Expect = 2e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 301 acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| |||| Sbjct: 37796 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 37737 Query: 361 ccccttgaagctgaaggtatacggata 387 | ||||| || || |||||||| |||| Sbjct: 37736 ctccttggagttggaggtatacagata 37710 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 246 ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 295 |||||||||||| | |||||||| |||||||| ||||| || |||||||| Sbjct: 37955 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 37906
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 75.8 bits (38), Expect = 9e-11 Identities = 71/82 (86%) Strand = Plus / Plus Query: 301 acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| |||| Sbjct: 20228 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 20287 Query: 361 ccccttgaagctgaaggtatac 382 | ||||| || ||||||||||| Sbjct: 20288 ctccttggagttgaaggtatac 20309 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 210 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 269 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 20032 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 20091 Query: 270 gcttccatcttctgagacag 289 |||||||| ||||| ||||| Sbjct: 20092 gcttccattttctgtgacag 20111
>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete sequence Length = 123406 Score = 75.8 bits (38), Expect = 9e-11 Identities = 71/82 (86%) Strand = Plus / Plus Query: 301 acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| |||| Sbjct: 7968 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 8027 Query: 361 ccccttgaagctgaaggtatac 382 | ||||| || ||||||||||| Sbjct: 8028 ctccttggagttgaaggtatac 8049 Score = 63.9 bits (32), Expect = 4e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 210 gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 269 ||||| || |||||||||||||| |||||| | | |||||||||||| ||||||| || Sbjct: 7772 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 7831 Query: 270 gcttccatcttctgagacag 289 |||||||| ||||| ||||| Sbjct: 7832 gcttccattttctgtgacag 7851
>gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence Length = 1244 Score = 61.9 bits (31), Expect = 1e-06 Identities = 142/179 (79%) Strand = Plus / Minus Query: 159 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttc 218 |||| |||||||||||| |||| ||||||| ||||| || || || |||| |||||| Sbjct: 953 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggggagcttt 894 Query: 219 ctcatgtcctcctcttggacactggggggagccttctctctgtaaccggacgcttccatc 278 |||||||||||||| || || || | ||||||||||| | || || || || ||||| Sbjct: 893 ctcatgtcctcctcctgcacgctctgtggagccttctcgcgatacccagaggcgtccatt 834 Query: 279 ttctgagacagggcatgctgtaacttttggatttcatccctctttttccttagcttttc 337 ||||| | ||| |||| |||| |||||| |||||||| | || |||||||||||||| Sbjct: 833 ttctgtgccagtgcattttgtagcttttgaatttcatcttttttcttccttagcttttc 775
>gb|AY112223.1| Zea mays CL3071_1 mRNA sequence Length = 1082 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 159 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttc 218 |||| |||||||||||| |||| ||||||| ||||| || || || ||||||||||| Sbjct: 446 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggtgagcttt 505 Query: 219 ctcatgtcctcctc 232 |||||||||||||| Sbjct: 506 ctcatgtcctcctc 519
>dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P08, full insert sequence Length = 3639 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 291 gcatgctgtaacttttggatttcatccctctttttccttagcttttcgagctccacttcc 350 ||||| |||| |||||||||| |||| ||||| |||||||||||||| |||| | || Sbjct: 3384 gcatggtgtagcttttggattccatctctcttcttccttagcttttcacgctcagcctct 3325 Query: 351 gcatttagagccccttgaagctgaaggta 379 ||||||| || |||||||||| |||||| Sbjct: 3324 gcatttatggctccttgaagcttaaggta 3296 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 156 gcatctagtttcttctcagcctcac 180 |||||||||||||||||||| |||| Sbjct: 3519 gcatctagtttcttctcagcttcac 3495
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 54.0 bits (27), Expect = 3e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 301 acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||||||| |||| ||||| |||||||||||||| |||| | || ||||||| | Sbjct: 54993 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 55052 Query: 361 ccccttgaagctgaaggta 379 | |||||||||| |||||| Sbjct: 55053 ctccttgaagcttaaggta 55071 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 156 gcatctagtttcttctcagcctcac 180 |||||||||||||||||||| |||| Sbjct: 54745 gcatctagtttcttctcagcttcac 54769
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 48.1 bits (24), Expect = 0.021 Identities = 72/88 (81%) Strand = Plus / Minus Query: 301 acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| || ||||| | ||||||||||||||| || |||| |||| | ||||||| Sbjct: 141536 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 141477 Query: 361 ccccttgaagctgaaggtatacggatag 388 | ||| | ||||| |||||||||||||| Sbjct: 141476 ctcctcgtagctggaggtatacggatag 141449
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.021 Identities = 72/88 (81%) Strand = Plus / Minus Query: 301 acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| || ||||| | ||||||||||||||| || |||| |||| | ||||||| Sbjct: 18843800 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 18843741 Query: 361 ccccttgaagctgaaggtatacggatag 388 | ||| | ||||| |||||||||||||| Sbjct: 18843740 ctcctcgtagctggaggtatacggatag 18843713
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.021 Identities = 72/88 (81%) Strand = Plus / Minus Query: 301 acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360 ||||||| || ||||| | ||||||||||||||| || |||| |||| | ||||||| Sbjct: 18855054 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 18854995 Query: 361 ccccttgaagctgaaggtatacggatag 388 | ||| | ||||| |||||||||||||| Sbjct: 18854994 ctcctcgtagctggaggtatacggatag 18854967
>ref|NM_197253.1| Oryza sativa (japonica cultivar-group) putative valyl tRNA synthetase (OSJNBa0062C05.27), mRNA Length = 3171 Score = 46.1 bits (23), Expect = 0.085 Identities = 71/87 (81%) Strand = Plus / Minus Query: 302 cttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagagc 361 |||||| || ||||| | ||||||||||||||| || |||| |||| | |||||||| Sbjct: 3015 cttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagagc 2956 Query: 362 cccttgaagctgaaggtatacggatag 388 ||| | ||||| |||||||||||||| Sbjct: 2955 tcctcgtagctggaggtatacggatag 2929
>gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 186915 Score = 46.1 bits (23), Expect = 0.085 Identities = 26/27 (96%) Strand = Plus / Minus Query: 28 tttgaattttctataaatgtgacatca 54 |||||| |||||||||||||||||||| Sbjct: 132214 tttgaaatttctataaatgtgacatca 132188
>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete sequence Length = 121915 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 26 catttgaattttctataaatgt 47 |||||||||||||||||||||| Sbjct: 75708 catttgaattttctataaatgt 75687
>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence Length = 81567 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 atttgaattttctataaatgt 47 ||||||||||||||||||||| Sbjct: 74176 atttgaattttctataaatgt 74196
>ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING finger protein 31 (Zinc in-between-RING-finger ubiquitin-associated domain protein) (LOC480259), mRNA Length = 3490 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 175 cctcaccgatgacccgcagttgctc 199 ||||||||||||| ||||||||||| Sbjct: 2442 cctcaccgatgacacgcagttgctc 2466
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 tatcaacttccaaacaaaaat 101 ||||||||||||||||||||| Sbjct: 9829802 tatcaacttccaaacaaaaat 9829822
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 tatcaacttccaaacaaaaat 101 ||||||||||||||||||||| Sbjct: 120044 tatcaacttccaaacaaaaat 120064
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 tatcaacttccaaacaaaaat 101 ||||||||||||||||||||| Sbjct: 26437 tatcaacttccaaacaaaaat 26457
>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete sequence Length = 168158 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 aatgtgacatcaccaccatcc 63 ||||||||||||||||||||| Sbjct: 140982 aatgtgacatcaccaccatcc 141002
>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence Length = 203728 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ccatttgaattttctataaa 44 |||||||||||||||||||| Sbjct: 23208 ccatttgaattttctataaa 23189
>ref|XM_543770.2| PREDICTED: Canis familiaris similar to solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 (LOC486643), mRNA Length = 3279 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 atgctgtaacttttggattt 312 |||||||||||||||||||| Sbjct: 1571 atgctgtaacttttggattt 1590
>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete sequence Length = 156282 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aacttccaaacaaaaatgcc 104 |||||||||||||||||||| Sbjct: 16747 aacttccaaacaaaaatgcc 16766
>emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, complete sequence Length = 15122 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aacttccaaacaaaaatgcc 104 |||||||||||||||||||| Sbjct: 3649 aacttccaaacaaaaatgcc 3668
>gb|AC162800.2| Mus musculus BAC clone RP24-173D2 from chromosome 17, complete sequence Length = 199202 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 ttagagccccttgaagctgaaggt 378 ||||| |||||||||||||||||| Sbjct: 47915 ttagatccccttgaagctgaaggt 47938
>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the HHEX gene for hematopoietically expressed homeobox, the 5' end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a eukaryotic translation initiation factor 2 subunit 2 (eIF-2-beta) pseudogene and four CpG islands, complete sequence Length = 190144 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 agagccccttgaagctgaag 376 |||||||||||||||||||| Sbjct: 76717 agagccccttgaagctgaag 76736
>emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chromosome 4 Contains the 3' end of the Col27a1 gene for procollagen type XXVII alpha 1, the Orm1, Orm2 and Orm3 genes for orosomucoid 1, 2 and 3, an orosomucoid pseudogene, the gene for a novel protein similar to human AT-hook protein AKNA, gene 4933437N03Rik, the Whrn gene for whirlin and two CpG islands, complete sequence Length = 214370 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 gagcttcctcatgtcctcct 231 |||||||||||||||||||| Sbjct: 31754 gagcttcctcatgtcctcct 31735
>emb|AL845501.9| Mouse DNA sequence from clone RP23-194C12 on chromosome 4 Contains a ribosomal protein S18 (Rps18) pseudogene, complete sequence Length = 156572 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ttccatcttctgagacaggg 291 |||||||||||||||||||| Sbjct: 31116 ttccatcttctgagacaggg 31135
>gb|AC093298.3| Homo sapiens chromosome 5 clone RP11-543L14, complete sequence Length = 198687 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cctctttttccttagctttt 336 |||||||||||||||||||| Sbjct: 147791 cctctttttccttagctttt 147772
>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence Length = 55775 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gcttcctcatgtcctcctct 233 |||||||||||||||||||| Sbjct: 23507 gcttcctcatgtcctcctct 23526
>ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment protein CG6625-RA (Snap), mRNA Length = 2069 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gaattttctataaatgtgac 50 |||||||||||||||||||| Sbjct: 1762 gaattttctataaatgtgac 1743
>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185918 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gaattttctataaatgtgac 50 |||||||||||||||||||| Sbjct: 106242 gaattttctataaatgtgac 106223
>gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, complete sequence Length = 168521 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 attttctataaatgtgacat 52 |||||||||||||||||||| Sbjct: 1961 attttctataaatgtgacat 1980
>gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosome 17, complete sequence Length = 195483 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aacttccaaacaaaaatgcc 104 |||||||||||||||||||| Sbjct: 160602 aacttccaaacaaaaatgcc 160621
>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence Length = 143516 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 tgaattttctataaatgtga 49 |||||||||||||||||||| Sbjct: 121095 tgaattttctataaatgtga 121076
>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172507 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 catttgaattttctataaat 45 |||||||||||||||||||| Sbjct: 161099 catttgaattttctataaat 161080
>gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, complete sequence Length = 155354 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 attttctataaatgtgacat 52 |||||||||||||||||||| Sbjct: 23774 attttctataaatgtgacat 23793
>ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothetical protein 6430402L03 (LOC302412), mRNA Length = 1632 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cttcctcatgtcctcctctt 234 |||||||||||||||||||| Sbjct: 1005 cttcctcatgtcctcctctt 986
>gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA Length = 2054 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gaattttctataaatgtgac 50 |||||||||||||||||||| Sbjct: 1730 gaattttctataaatgtgac 1711
>emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-318A9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175584 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 atgtgacatcaccaccatcc 63 |||||||||||||||||||| Sbjct: 71007 atgtgacatcaccaccatcc 71026
>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence Length = 229073 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ctgtaacttttggatttcat 315 |||||||||||||||||||| Sbjct: 161157 ctgtaacttttggatttcat 161138
>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete sequence Length = 299903 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gaattttctataaatgtgac 50 |||||||||||||||||||| Sbjct: 288396 gaattttctataaatgtgac 288377
>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence Length = 198582 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 tgaattttctataaatgtga 49 |||||||||||||||||||| Sbjct: 63377 tgaattttctataaatgtga 63358
>gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachment protein mRNA, complete cds Length = 2038 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gaattttctataaatgtgac 50 |||||||||||||||||||| Sbjct: 1718 gaattttctataaatgtgac 1699
>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete sequence Length = 216415 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 tttgaattttctataaatgt 47 |||||||||||||||||||| Sbjct: 104442 tttgaattttctataaatgt 104461
>gb|AC024092.19| Homo sapiens 12p BAC RP11-712A21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171887 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 cttttggatttcatccctct 321 |||||||||||||||||||| Sbjct: 59407 cttttggatttcatccctct 59388 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,138,117 Number of Sequences: 3902068 Number of extensions: 4138117 Number of successful extensions: 117968 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 117668 Number of HSP's gapped (non-prelim): 298 length of query: 391 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 369 effective length of database: 17,147,199,772 effective search space: 6327316715868 effective search space used: 6327316715868 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
