ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL929288.4| Human DNA sequence from clone RP11-669M2 on chro... 40 3.0
2gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complet... 40 3.0
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
4gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, compl... 40 3.0
5gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) gen... 40 3.0
6gb|AC125035.3| Mus musculus chromosome UL clone RP23-328F24, com... 40 3.0
7dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0

>emb|AL929288.4| Human DNA sequence from clone RP11-669M2 on chromosome 1 Contains the
             3' end of a novel gene and apolipoprotein L 3 (APOL3)
             pseudogene, complete sequence
          Length = 172898

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    tcaaaaaacatgattcaaca 115
             ||||||||||||||||||||
Sbjct: 44950 tcaaaaaacatgattcaaca 44931



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>gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complete sequence
          Length = 121737

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   taaatacagcagaatatatt 207
             ||||||||||||||||||||
Sbjct: 89696 taaatacagcagaatatatt 89677



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 157      ccactatagtagcctgttat 176
                ||||||||||||||||||||
Sbjct: 16754860 ccactatagtagcctgttat 16754841



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>gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, complete sequence
          Length = 156582

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   taaatacagcagaatatatt 207
             ||||||||||||||||||||
Sbjct: 45601 taaatacagcagaatatatt 45620



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>gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) genomic sequence
          Length = 43180

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 187   ctaaatacagcagaatatattcagttaa 214
             |||||| |||||||||||||||| ||||
Sbjct: 28764 ctaaatgcagcagaatatattcatttaa 28737



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>gb|AC125035.3| Mus musculus chromosome UL clone RP23-328F24, complete sequence
          Length = 198197

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    aaaaacatgattcaacacaa 118
             ||||||||||||||||||||
Sbjct: 99040 aaaaacatgattcaacacaa 99059



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>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0664F03
          Length = 184242

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    ccactatagtagcctgttat 176
              ||||||||||||||||||||
Sbjct: 106347 ccactatagtagcctgttat 106328


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,020,068
Number of Sequences: 3902068
Number of extensions: 2020068
Number of successful extensions: 57300
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57279
Number of HSP's gapped (non-prelim): 21
length of query: 231
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 209
effective length of database: 17,147,199,772
effective search space: 3583764752348
effective search space used: 3583764752348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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