Clone Name | rbastl11a11 |
---|---|
Clone Library Name | barley_pub |
>gb|AC020728.4|AC020728 Homo sapiens BAC clone RP11-506H20 from 5, complete sequence Length = 201404 Score = 48.1 bits (24), Expect = 0.017 Identities = 27/28 (96%) Strand = Plus / Plus Query: 148 ttgccaagatgaatcctacttttaaaac 175 |||||||||||| ||||||||||||||| Sbjct: 146381 ttgccaagatgactcctacttttaaaac 146408
>emb|AL138836.15| Human DNA sequence from clone RP11-88M19 on chromosome 9 Contains the 5' end of the CDK5RAP2 gene for CDK5 regulatory subunit associated protein 2 (C48), the EGFL5 gene for EGF-like-domain, multiple 5 (MEGF9), an S-adenosylhomocysteine hydrolase (AHCY) pseudogene, the 3' end of a variant of the FBXW2 gene for F-box and WD-40 domain protein 2 (FBW2) and a CpG island, complete sequence Length = 188481 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 53 ttaccaacctcatccacaccaa 74 |||||||||||||||||||||| Sbjct: 151552 ttaccaacctcatccacaccaa 151573
>gb|AC115097.6| Homo sapiens chromosome 11, clone CTD-2532J14, complete sequence Length = 132923 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 agcaccatgcacaaaaccaca 303 ||||||||||||||||||||| Sbjct: 486 agcaccatgcacaaaaccaca 506
>gb|AC024293.18| Homo sapiens chromosome 11, clone RP11-425L10, complete sequence Length = 70106 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 agcaccatgcacaaaaccaca 303 ||||||||||||||||||||| Sbjct: 48638 agcaccatgcacaaaaccaca 48658
>dbj|AK025353.1| Homo sapiens cDNA: FLJ21700 fis, clone COL09849, highly similar to HSU14972 Human ribosomal protein S10 mRNA Length = 3194 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 agcaccatgcacaaaaccaca 303 ||||||||||||||||||||| Sbjct: 1475 agcaccatgcacaaaaccaca 1455
>ref|XM_514594.1| PREDICTED: Pan troglodytes similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (LOC458190), mRNA Length = 2249 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 446 accaacctcatccacaccaa 465
>gb|BC010018.2| Homo sapiens S-adenosylhomocysteine hydrolase, mRNA (cDNA clone MGC:19639 IMAGE:2905378), complete cds Length = 2166 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 475 accaacctcatccacaccaa 494
>gb|AC145615.3| Homo sapiens BAC clone RP11-1217H2 from UL, complete sequence Length = 207889 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ttggatacaatagcaattta 55 |||||||||||||||||||| Sbjct: 175402 ttggatacaatagcaattta 175383
>gb|AC113454.8| Mus musculus chromosome 3, clone RP24-176I19, complete sequence Length = 171480 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 accatgcacaaaaccacatg 305 |||||||||||||||||||| Sbjct: 20369 accatgcacaaaaccacatg 20350
>gb|BC114924.1| Homo sapiens hypothetical protein FLJ20245, mRNA (cDNA clone MGC:134782 IMAGE:40025256), complete cds Length = 1335 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 195 accaacctcatccacaccaa 214
>emb|AL356299.16| Human DNA sequence from clone CTD-3216D2 on chromosome 20 Contains the AHCY gene encoding S-adenosylhomocysteine hydrolase, the 5' end of the ITCH gene for itchy homolog E3 ubiquitin protein ligase (mouse), the CDC42P1 gene for cell division cycle 42 pseudogene 1, a pseudogene similar to part of laminin receptor 1 (ribosomal protein SA, 67kDa) (LAMR1) and two CpG islands, complete sequence Length = 152334 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 21774 accaacctcatccacaccaa 21755
>gb|AC141587.2| Homo sapiens chromosome 16 clone RP11-1046E19, complete sequence Length = 186890 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ttggatacaatagcaattta 55 |||||||||||||||||||| Sbjct: 83796 ttggatacaatagcaattta 83777
>gb|BT007625.1| Synthetic construct Homo sapiens S-adenosylhomocysteine hydrolase mRNA, partial cds Length = 1299 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 406 accaacctcatccacaccaa 425
>gb|BT006697.1| Homo sapiens S-adenosylhomocysteine hydrolase mRNA, complete cds Length = 1299 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 406 accaacctcatccacaccaa 425
>dbj|AK097610.1| Homo sapiens cDNA FLJ40291 fis, clone TESTI2028384, highly similar to ADENOSYLHOMOCYSTEINASE (EC 3.3.1.1) Length = 2355 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 698 accaacctcatccacaccaa 717
>gb|AC182397.3| Pan troglodytes BAC clone CH251-345O12 from chromosome 16, complete sequence Length = 158303 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ttggatacaatagcaattta 55 |||||||||||||||||||| Sbjct: 124787 ttggatacaatagcaattta 124768
>emb|CR603449.1| full-length cDNA clone CS0DG007YH14 of B cells (Ramos cell line) of Homo sapiens (human) Length = 1646 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 10 accaacctcatccacaccaa 29
>emb|CR594678.1| full-length cDNA clone CS0DL004YE09 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 2111 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 484 accaacctcatccacaccaa 503
>gb|AC007028.3| Homo sapiens chromosome 16 clone RP5-835P2, complete sequence Length = 148807 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ttggatacaatagcaattta 55 |||||||||||||||||||| Sbjct: 125306 ttggatacaatagcaattta 125325
>ref|NM_000687.1| Homo sapiens S-adenosylhomocysteine hydrolase (AHCY), mRNA Length = 2110 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 453 accaacctcatccacaccaa 472
>dbj|AB169648.1| Macaca fascicularis brain cDNA, clone: QccE-12261, similar to human S-adenosylhomocysteine hydrolase (AHCY), mRNA, RefSeq: NM_000687.1 Length = 2165 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 491 accaacctcatccacaccaa 510
>gb|BC105194.1| Bos taurus S-adenosylhomocysteine hydrolase, mRNA (cDNA clone MGC:128223 IMAGE:7948966), complete cds Length = 2140 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 497 accaacctcatccacaccaa 516
>gb|AC141248.2| Homo sapiens chromosome 16 clone RP11-1251B5, complete sequence Length = 173206 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ttggatacaatagcaattta 55 |||||||||||||||||||| Sbjct: 23499 ttggatacaatagcaattta 23480
>gb|AC140890.2| Homo sapiens chromosome 16 clone RP11-188D24, complete sequence Length = 172153 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ttggatacaatagcaattta 55 |||||||||||||||||||| Sbjct: 126680 ttggatacaatagcaattta 126661
>gb|AC004902.2|AC004902 Homo sapiens PAC clone RP5-823F17 from 7q36, complete sequence Length = 104154 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ttggatacaatagcaattta 55 |||||||||||||||||||| Sbjct: 63676 ttggatacaatagcaattta 63695
>gb|AC013734.4|AC013734 Homo sapiens BAC clone RP11-557B9 from Y, complete sequence Length = 180019 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ttggatacaatagcaattta 55 |||||||||||||||||||| Sbjct: 85164 ttggatacaatagcaattta 85183
>gb|AC136428.3| Homo sapiens chromosome 16 clone RP11-104C4, complete sequence Length = 193708 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ttggatacaatagcaattta 55 |||||||||||||||||||| Sbjct: 94396 ttggatacaatagcaattta 94377
>gb|AY892700.1| Synthetic construct Homo sapiens clone FLH024356.01L S-adenosylhomocysteine hydrolase (AHCY) mRNA, partial cds Length = 1299 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 406 accaacctcatccacaccaa 425
>gb|AY890211.1| Synthetic construct Homo sapiens clone FLH024359.01X S-adenosylhomocysteine hydrolase (AHCY) mRNA, complete cds Length = 1299 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 406 accaacctcatccacaccaa 425
>emb|AL928960.25| Mouse DNA sequence from clone RP23-413K16 on chromosome 2, complete sequence Length = 195733 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gagcaccatgcacaaaacca 301 |||||||||||||||||||| Sbjct: 152033 gagcaccatgcacaaaacca 152052
>gb|BC011606.2| Homo sapiens S-adenosylhomocysteine hydrolase, mRNA (cDNA clone MGC:2319 IMAGE:3139231), complete cds Length = 2174 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 480 accaacctcatccacaccaa 499
>dbj|AP000974.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-700A24, complete sequence Length = 94359 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 74780 accaacctcatccacaccaa 74799
>ref|NM_001034315.1| Bos taurus S-adenosylhomocysteine hydrolase (AHCY), mRNA Length = 2140 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 497 accaacctcatccacaccaa 516
>gb|M61832.1|HUMAHCY2 Human S-adenosylhomocysteine hydrolase (AHCY) mRNA, complete cds Length = 2084 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 449 accaacctcatccacaccaa 468
>gb|M61831.1|HUMAHCY Human S-adenosylhomocysteine hydrolase (AHCY) mRNA, complete cds Length = 2211 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 accaacctcatccacaccaa 74 |||||||||||||||||||| Sbjct: 453 accaacctcatccacaccaa 472 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,568,938 Number of Sequences: 3902068 Number of extensions: 2568938 Number of successful extensions: 47401 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47344 Number of HSP's gapped (non-prelim): 57 length of query: 312 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 290 effective length of database: 17,147,199,772 effective search space: 4972687933880 effective search space used: 4972687933880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)