Clone Name | rbastl11a09 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | OXR1_CANAL (Q5AEM5) Oxidation resistance protein 1 | 29 | 2.6 | 2 | PRP5_CANAL (Q5ADL0) Pre-mRNA-processing ATP-dependent RNA helica... | 29 | 3.4 |
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>OXR1_CANAL (Q5AEM5) Oxidation resistance protein 1| Length = 345 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Frame = +3 Query: 162 YNSKAAAYF-ESECPFHHHRRMTNENCLLWQTD-YRSTK-DNHLQASASQYIEF 314 +N+K AY E+ P H R N C LW+ + Y +K D+ + A+Q I F Sbjct: 213 HNNKFGAYLSENLKPMEHRRYYGNGECFLWKCEKYDPSKLDHAVDKRATQEIRF 266
>PRP5_CANAL (Q5ADL0) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC| 3.6.1.-) Length = 884 Score = 28.9 bits (63), Expect = 3.4 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -1 Query: 198 TQTQNKLQLCCCIGGSFREDWFSTRPRG 115 T+ N L++CCC GGS E+ + +G Sbjct: 391 TKRNNNLRVCCCYGGSSIENQINELKKG 418 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,041,705 Number of Sequences: 219361 Number of extensions: 711187 Number of successful extensions: 1282 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1271 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1282 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)