Clone Name | rbastl11a08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 95 ctatagattaaaggaaatacaacatctta 123 |||||||||||||||| |||||||||||| Sbjct: 19143705 ctatagattaaaggaagtacaacatctta 19143677
>dbj|AK063403.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A05, full insert sequence Length = 2337 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 95 ctatagattaaaggaaatacaacatctta 123 |||||||||||||||| |||||||||||| Sbjct: 2277 ctatagattaaaggaagtacaacatctta 2249
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 95 ctatagattaaaggaaatacaacatctta 123 |||||||||||||||| |||||||||||| Sbjct: 77225 ctatagattaaaggaagtacaacatctta 77197
>gb|AC151912.1| Pan troglodytes chromosome X clone PTB-093M21 map human ortholog q26.2, complete sequence Length = 180904 Score = 46.1 bits (23), Expect = 0.051 Identities = 26/27 (96%) Strand = Plus / Plus Query: 94 gctatagattaaaggaaatacaacatc 120 |||||||||| |||||||||||||||| Sbjct: 148431 gctatagatttaaggaaatacaacatc 148457
>emb|CR385039.8| Zebrafish DNA sequence from clone DKEYP-31D1 in linkage group 24, complete sequence Length = 166302 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Minus Query: 126 taaatttggtacattaataattt 148 ||||||||||||||||||||||| Sbjct: 51137 taaatttggtacattaataattt 51115
>emb|AL049539.21|HSJ836N17 Human DNA sequence from clone RP5-836N17 on chromosome 20q11.1-11.21 Contains the 3' end of the HCK for hemopoietic cell kinase, the gene for novel protein (KIAA0255), the RPL24P1 gene for ribosomal protein L24 pseudogene 1 and two CpG Islands, complete sequence Length = 111694 Score = 42.1 bits (21), Expect = 0.80 Identities = 27/29 (93%) Strand = Plus / Minus Query: 42 ttcaaatcagaattttgaaatcatcaagt 70 ||||| ||||||||| ||||||||||||| Sbjct: 39515 ttcaactcagaatttggaaatcatcaagt 39487
>emb|Y10196.1|HSPEX Homo sapiens PHEX gene Length = 242825 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 4 ctaaatataatattaaattgccgaa 28 |||||||||||||| |||||||||| Sbjct: 92222 ctaaatataatattgaattgccgaa 92246
>ref|XM_633867.1| Dictyostelium discoideum hypothetical protein (DDB0185622), partial mRNA Length = 882 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 catcttaggtaaatttggta 136 |||||||||||||||||||| Sbjct: 792 catcttaggtaaatttggta 811
>gb|AC150919.6| Bos taurus BAC CH240-303F16 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 160376 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ttcaaatcagaattttgaaa 61 |||||||||||||||||||| Sbjct: 47258 ttcaaatcagaattttgaaa 47239
>gb|AC135114.4| Mus musculus BAC clone RP24-69H7 from chromosome 14, complete sequence Length = 181062 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 ttcaaatcagaattttgaaatcat 65 ||||| |||||||||||||||||| Sbjct: 180291 ttcaagtcagaattttgaaatcat 180268
>gb|AC122933.4| Mus musculus BAC clone RP23-18P3 from 14, complete sequence Length = 224941 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 ttcaaatcagaattttgaaatcat 65 ||||| |||||||||||||||||| Sbjct: 23816 ttcaagtcagaattttgaaatcat 23793
>gb|AC131723.1| Mus musculus BAC clone RP23-144E24 from 1, complete sequence Length = 200656 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gttcaaatcagaattttgaa 60 |||||||||||||||||||| Sbjct: 171292 gttcaaatcagaattttgaa 171273
>gb|AC022202.12| Homo sapiens BAC clone RP11-321E8 from 7, complete sequence Length = 95097 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 caaatcagaattttgaaatc 63 |||||||||||||||||||| Sbjct: 51195 caaatcagaattttgaaatc 51214
>emb|AL929014.28| Zebrafish DNA sequence from clone CH211-198B3 in linkage group 20 Contains the gene for a novel protein similar to vertebrate fibronectin type III domain containing 1 (FNDC1), the 5' end of the gene for a novel protein similar to vertebrate otoferlin (OTOF), a novel gene and two CpG islands, complete sequence Length = 163523 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 taaatataatattaaattgc 24 |||||||||||||||||||| Sbjct: 19091 taaatataatattaaattgc 19072
>emb|BX927378.12| Zebrafish DNA sequence from clone CH211-116K3 in linkage group 5, complete sequence Length = 123661 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 tcccccctcaaacttgatgg 197 |||||||||||||||||||| Sbjct: 102925 tcccccctcaaacttgatgg 102906
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 tatagattaaaggaaataca 115 |||||||||||||||||||| Sbjct: 16535510 tatagattaaaggaaataca 16535529
>dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0583E12 Length = 152449 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 tatagattaaaggaaataca 115 |||||||||||||||||||| Sbjct: 31490 tatagattaaaggaaataca 31509
>gb|AC020647.9|AC020647 Homo sapiens 12 BAC RP11-922O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147720 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ccactaaatataatattaaa 20 |||||||||||||||||||| Sbjct: 41936 ccactaaatataatattaaa 41917
>emb|AL136969.7| Human DNA sequence from clone RP1-207J11 on chromosome 7 Contains ESTs and STSs. Contains two zinc finger protein pseudogenes, a putative novel gene and an HNRPC (heterogeneous nuclear ribonucleoprotein C (C1/C2)) pseudogene, complete sequence Length = 79666 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 caaatcagaattttgaaatc 63 |||||||||||||||||||| Sbjct: 1869 caaatcagaattttgaaatc 1888 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,685,131 Number of Sequences: 3902068 Number of extensions: 2685131 Number of successful extensions: 56008 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55938 Number of HSP's gapped (non-prelim): 70 length of query: 245 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 223 effective length of database: 17,147,199,772 effective search space: 3823825549156 effective search space used: 3823825549156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)