ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl11a05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 111 bits (56), Expect = 2e-21 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand = Plus / Plus Query: 316 acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 374 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | | Sbjct: 27506748 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 27506807 Query: 375 aa-aaagatccttatcacctagcaaagg 401 || |||||||||||||||||||||||| Sbjct: 27506808 aagcaagatccttatcacctagcaaagg 27506835
>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0657H12 Length = 142688 Score = 111 bits (56), Expect = 2e-21 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand = Plus / Plus Query: 316 acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 374 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | | Sbjct: 98470 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 98529 Query: 375 aa-aaagatccttatcacctagcaaagg 401 || |||||||||||||||||||||||| Sbjct: 98530 aagcaagatccttatcacctagcaaagg 98557
>dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A10, full insert sequence Length = 3437 Score = 111 bits (56), Expect = 2e-21 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand = Plus / Minus Query: 316 acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 374 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | | Sbjct: 3048 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 2989 Query: 375 aa-aaagatccttatcacctagcaaagg 401 || |||||||||||||||||||||||| Sbjct: 2988 aagcaagatccttatcacctagcaaagg 2961
>dbj|AB101648.1| Oryza sativa (japonica cultivar-group) Roc5 mRNA for GL2-type homeodomain protein, complete cds Length = 3114 Score = 111 bits (56), Expect = 2e-21 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand = Plus / Minus Query: 316 acggaagaggcc-gagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtc 374 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | | Sbjct: 2728 acggtagaggccagagtcaatacccgaaccaccaccattgctctgtgctaaggaccggcc 2669 Query: 375 aa-aaagatccttatcacctagcaaagg 401 || |||||||||||||||||||||||| Sbjct: 2668 aagcaagatccttatcacctagcaaagg 2641
>emb|AL663003.2|OSJN00203 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06, complete sequence Length = 125196 Score = 95.6 bits (48), Expect = 1e-16 Identities = 51/52 (98%) Strand = Plus / Plus Query: 321 agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 372 |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65120 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 65171
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 95.6 bits (48), Expect = 1e-16 Identities = 51/52 (98%) Strand = Plus / Plus Query: 321 agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 372 |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28574330 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 28574381 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 aaacagaggcaacgagccagccaa 234 |||||||| ||||||||||||||| Sbjct: 3500684 aaacagagccaacgagccagccaa 3500661
>dbj|AK112099.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E06, full insert sequence Length = 3089 Score = 95.6 bits (48), Expect = 1e-16 Identities = 51/52 (98%) Strand = Plus / Minus Query: 321 agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 372 |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2725 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2674
>dbj|AK111914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128F17, full insert sequence Length = 3052 Score = 95.6 bits (48), Expect = 1e-16 Identities = 51/52 (98%) Strand = Plus / Minus Query: 321 agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 372 |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2707 agaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2656
>dbj|AB101647.1| Oryza sativa (japonica cultivar-group) Roc4 mRNA for GL2-type homeodomain protein, complete cds Length = 2957 Score = 93.7 bits (47), Expect = 4e-16 Identities = 50/51 (98%) Strand = Plus / Minus Query: 322 gaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 372 ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2608 gaggctgagtcaatacccgaaccaccaccattgctctgtgctaaggacctg 2558
>emb|AJ748731.1| Zea mays OCL1 gene for homeobox protein OCL1, exons 1-9 Length = 9947 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/83 (89%), Gaps = 2/83 (2%) Strand = Plus / Minus Query: 321 agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtcaaa--a 378 |||| |||||||||||||||||||||||||||||||| ||||||| |||| ||| || Sbjct: 9006 agagaccgagtcaatacccgaaccaccaccattgctccgtgctaaagacccgtccaagct 8947 Query: 379 agatccttatcacctagcaaagg 401 |||||||||||||||||||||| Sbjct: 8946 ggatccttatcacctagcaaagg 8924
>emb|Y17898.1|ZMA17898 Zea mays mRNA for encoding homeobox protein Length = 3092 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/83 (89%), Gaps = 2/83 (2%) Strand = Plus / Minus Query: 321 agaggccgagtcaatacccgaaccaccaccattgctctgtgctaaggacctgtcaaa--a 378 |||| |||||||||||||||||||||||||||||||| ||||||| |||| ||| || Sbjct: 2784 agagaccgagtcaatacccgaaccaccaccattgctccgtgctaaagacccgtccaagct 2725 Query: 379 agatccttatcacctagcaaagg 401 |||||||||||||||||||||| Sbjct: 2724 ggatccttatcacctagcaaagg 2702
>emb|AJ250984.1|ZMA250984 Zea mays mRNA for OCL2 protein (ocl2 gene) Length = 2660 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 322 gaggccgagtcaatacccgaaccaccaccattgctctgtgcta 364 ||||| |||||||||||||||||||| |||||||| ||||||| Sbjct: 2346 gaggctgagtcaatacccgaaccaccgccattgctgtgtgcta 2304
>gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete sequence Length = 107371 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 326 ccgagtcaatacccgaaccaccacc 350 ||||||||||||||||||||||||| Sbjct: 25596 ccgagtcaatacccgaaccaccacc 25620
>gb|AF067961.1|AF067961 Malus domestica homeodomain protein (h3) mRNA, complete cds Length = 2423 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 326 ccgagtcaatacccgaaccaccaccattgctctgtgctaag 366 ||||||||||||||||||||||| | |||| ||||||||| Sbjct: 2277 ccgagtcaatacccgaaccaccagccttgcattgtgctaag 2237
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 292 atggcactggggaaatacagcc 313 |||||||||||||||||||||| Sbjct: 3520927 atggcactggggaaatacagcc 3520948
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 292 atggcactggggaaatacagcc 313 |||||||||||||||||||||| Sbjct: 2665467 atggcactggggaaatacagcc 2665446
>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete sequence Length = 205589 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 274 aagaaatatctaaaatgcatgg 295 |||||||||||||||||||||| Sbjct: 95615 aagaaatatctaaaatgcatgg 95636
>gb|AC158514.2| Mus musculus BAC clone RP24-480D16 from chromosome 12, complete sequence Length = 204825 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 agagagacgcacaaaacagag 218 ||||||||||||||||||||| Sbjct: 84515 agagagacgcacaaaacagag 84535
>gb|AC147065.2| Pan troglodytes BAC clone RP43-163G7 from 7, complete sequence Length = 167103 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cccagcattcctgagcttcca 167 ||||||||||||||||||||| Sbjct: 130358 cccagcattcctgagcttcca 130378
>gb|AC154903.4| Mus musculus BAC clone RP23-414E24 from chromosome 12, complete sequence Length = 201338 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 agagagacgcacaaaacagag 218 ||||||||||||||||||||| Sbjct: 8820 agagagacgcacaaaacagag 8800
>emb|AJ250985.1|ZMA250985 Zea mays mRNA for OCL3 protein (ocl3 gene) Length = 3580 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 agtcaatacccgaaccaccac 349 ||||||||||||||||||||| Sbjct: 3469 agtcaatacccgaaccaccac 3449
>gb|AC018647.5| Homo sapiens chromosome 7 clone RP11-379H18, complete sequence Length = 160732 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 cccagcattcctgagcttcca 167 ||||||||||||||||||||| Sbjct: 139215 cccagcattcctgagcttcca 139195
>emb|AL390723.21| Human DNA sequence from clone RP11-19G1 on chromosome 9 Contains part of a variant of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD), complete sequence Length = 94643 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 ggcactggggaaatacagccg 314 ||||||||||||||||||||| Sbjct: 19820 ggcactggggaaatacagccg 19800
>gb|AC068233.11| Homo sapiens chromosome 15, clone RP11-169M2, complete sequence Length = 177483 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 aacccagcattcctgagcttc 165 ||||||||||||||||||||| Sbjct: 94469 aacccagcattcctgagcttc 94449
>gb|AC182751.1| Gasterosteus aculeatus clone VMRC26-154K14, complete sequence Length = 166500 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 341 aaccaccaccattgctctgtgctaa 365 |||||||||||||||| |||||||| Sbjct: 39977 aaccaccaccattgctttgtgctaa 40001
>gb|AC000100.2| Homo sapiens Chromosome 19 BAC Clone 959a10, complete sequence Length = 101912 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 209 caaaacagaggcaacgagccagccaaaag 237 ||||||||||||| ||||| ||||||||| Sbjct: 44542 caaaacagaggcaccgagctagccaaaag 44514
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 agtcaatacccgaaccaccac 349 ||||||||||||||||||||| Sbjct: 20266847 agtcaatacccgaaccaccac 20266867
>gb|AC073649.3|AC073649 Homo sapiens clone RP11-823D8, complete sequence Length = 120951 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 209 caaaacagaggcaacgagccagccaaaag 237 ||||||||||||| ||||| ||||||||| Sbjct: 102359 caaaacagaggcaccgagctagccaaaag 102331
>gb|AC010682.3| Homo sapiens BAC clone RP11-251M8 from Y, complete sequence Length = 145383 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 caaaacagaggcaacgagccagccaaaag 237 ||||||||||||| ||||| ||||||||| Sbjct: 121766 caaaacagaggcaccgagctagccaaaag 121794
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 209 caaaacagaggcaacgagccagccaaaag 237 ||||||||||||| ||||| ||||||||| Sbjct: 3958563 caaaacagaggcaccgagctagccaaaag 3958591 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 209 caaaacagaggcaacgagccagccaaaag 237 ||||||||||||| ||||| ||||||||| Sbjct: 2089771 caaaacagaggcaccgagctagccaaaag 2089743
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 agtcaatacccgaaccaccac 349 ||||||||||||||||||||| Sbjct: 45974 agtcaatacccgaaccaccac 45994
>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0047P18 Length = 169128 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 agtcaatacccgaaccaccac 349 ||||||||||||||||||||| Sbjct: 160347 agtcaatacccgaaccaccac 160367
>dbj|AK071877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040J18, full insert sequence Length = 2218 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 agtcaatacccgaaccaccac 349 ||||||||||||||||||||| Sbjct: 2007 agtcaatacccgaaccaccac 1987
>gb|AY110994.1| Zea mays CL1209_1 mRNA sequence Length = 3550 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 agtcaatacccgaaccaccac 349 ||||||||||||||||||||| Sbjct: 3469 agtcaatacccgaaccaccac 3449
>ref|NM_116298.2| Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2); transcription factor AT4G00730 (ANL2) mRNA, complete cds Length = 3174 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 agtcaatacccgaaccacca 348 |||||||||||||||||||| Sbjct: 3018 agtcaatacccgaaccacca 2999
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 acccgaaccaccaccattgc 355 |||||||||||||||||||| Sbjct: 490925 acccgaaccaccaccattgc 490906
>emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chromosome 17, complete sequence Length = 211741 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cttgaagaaatatctaaaat 289 |||||||||||||||||||| Sbjct: 48642 cttgaagaaatatctaaaat 48661
>gb|AF328842.1| Picea abies homeodomain protein HB2 mRNA, complete cds Length = 3110 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 328 gagtcaatacccgaaccaccaccattgc 355 ||||||||||||||||||| ||| |||| Sbjct: 2996 gagtcaatacccgaaccactacccttgc 2969
>gb|AC134265.6| Rattus norvegicus 13 BAC CH230-151K3 (Children's Hospital Oakland Research Institute) complete sequence Length = 209981 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 ttgaagaaatatctaaaatg 290 |||||||||||||||||||| Sbjct: 157323 ttgaagaaatatctaaaatg 157304
>gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome 12, complete sequence Length = 181828 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 ttcctgagcttccacttgcatacc 177 |||||||||||||||| ||||||| Sbjct: 45022 ttcctgagcttccactggcatacc 44999
>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11, complete sequence Length = 127419 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 aaacagaggcaacgagccagccaa 234 |||||||| ||||||||||||||| Sbjct: 89979 aaacagagccaacgagccagccaa 89956
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2 Length = 197975 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 agtcaatacccgaaccacca 348 |||||||||||||||||||| Sbjct: 106202 agtcaatacccgaaccacca 106221
>emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on chromosome 11 Contains a protease (prosome, macropain) 26S subunit ATPase 1 (Psmc1) pseudogene and a CpG island, complete sequence Length = 197265 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gaaccaccaccattgctctg 359 |||||||||||||||||||| Sbjct: 63006 gaaccaccaccattgctctg 63025
>emb|BX538053.1|HSM806224 Homo sapiens genomic DNA; cDNA DKFZp686L04145 (from clone DKFZp686L04145) Length = 3770 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cattgattgcaaaaataaat 38 |||||||||||||||||||| Sbjct: 2887 cattgattgcaaaaataaat 2906
>gb|AC107628.4| Homo sapiens chromosome 8, clone CTD1-2009P10, complete sequence Length = 102718 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cattgattgcaaaaataaat 38 |||||||||||||||||||| Sbjct: 43071 cattgattgcaaaaataaat 43090
>gb|AY062100.1| Arabidopsis thaliana AT4g00730/f6n23_10 mRNA sequence Length = 2075 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 agtcaatacccgaaccacca 348 |||||||||||||||||||| Sbjct: 1938 agtcaatacccgaaccacca 1919
>gb|AY048575.1| Xenopus laevis Pax6 gene, promoter and 5'UTR Length = 2603 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 attgattgcaaaaataaatt 39 |||||||||||||||||||| Sbjct: 1488 attgattgcaaaaataaatt 1507
>gb|AC163744.3| Pan troglodytes BAC clone CH251-376E11 from chromosome unknown, complete sequence Length = 195342 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cattgattgcaaaaataaat 38 |||||||||||||||||||| Sbjct: 160142 cattgattgcaaaaataaat 160161
>gb|AC175061.3| Pan troglodytes BAC clone CH251-572M8 from chromosome unknown, complete sequence Length = 191409 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 cattgattgcaaaaataaat 38 |||||||||||||||||||| Sbjct: 46979 cattgattgcaaaaataaat 46960
>emb|BX827413.1|CNS0A2GQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS51ZF02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 3144 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 agtcaatacccgaaccacca 348 |||||||||||||||||||| Sbjct: 2957 agtcaatacccgaaccacca 2938
>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 Length = 91849 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 agtcaatacccgaaccacca 348 |||||||||||||||||||| Sbjct: 87328 agtcaatacccgaaccacca 87347
>emb|BX470100.6| Zebrafish DNA sequence from clone DKEY-239K7 in linkage group 18, complete sequence Length = 117304 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 cagacattatttggcagatagctt 84 |||||||||||||||| ||||||| Sbjct: 61196 cagacattatttggcatatagctt 61173
>dbj|AP005367.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB800C8, complete sequence Length = 112111 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 cattgattgcaaaaataaat 38 |||||||||||||||||||| Sbjct: 104560 cattgattgcaaaaataaat 104541
>gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, complete sequence Length = 168481 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ccagcattcctgagcttcca 167 |||||||||||||||||||| Sbjct: 62548 ccagcattcctgagcttcca 62529
>gb|U85254.1|ATU85254 Arabidopsis thaliana homeodomain protein AHDP mRNA, complete cds Length = 2953 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 agtcaatacccgaaccacca 348 |||||||||||||||||||| Sbjct: 2838 agtcaatacccgaaccacca 2819
>gb|U34743.1|PSU34743 Phalaenopsis sp. 'hybrid SM9108' homeobox protein mRNA, complete cds Length = 3060 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 328 gagtcaatacccgaaccaccaccattgc 355 |||||||||||||||||| |||| |||| Sbjct: 2798 gagtcaatacccgaaccaacacccttgc 2771
>dbj|AP004295.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1907E5 Length = 154597 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 cattgattgcaaaaataaat 38 |||||||||||||||||||| Sbjct: 21892 cattgattgcaaaaataaat 21873 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,883,735 Number of Sequences: 3902068 Number of extensions: 3883735 Number of successful extensions: 71828 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71622 Number of HSP's gapped (non-prelim): 202 length of query: 402 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 380 effective length of database: 17,147,199,772 effective search space: 6515935913360 effective search space used: 6515935913360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
