ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DHH1_CANGA (Q6FQU5) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-) 29 3.6
2SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor 28 4.7

>DHH1_CANGA (Q6FQU5) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)|
          Length = 507

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 90  RKQTHNATQTQPQPGHRVRRPGDTTFVLPQVSFSLFLPIP 209
           ++Q     Q Q Q G +   PG   F+ PQ     F+P+P
Sbjct: 429 QEQQQQQQQQQGQQGQQQGYPGQQAFIPPQQGQPQFMPVP 468



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>SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor|
          Length = 263

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 33  PTFRSTHPTHSTYSNTTEYRKQTHNATQTQP-QPGHRVRRPGDTT 164
           PT RST   H+T + TT  R  T   T  +P       RRP  TT
Sbjct: 109 PTTRSTTTRHTTTTTTTTRRPTTTTTTTRRPTTTTTTTRRPTTTT 153



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 33  PTFRSTHPTHSTYSNTTEYRKQTHNATQTQPQP 131
           PT RST   H+T S T+  ++ TH  T T  +P
Sbjct: 159 PTTRSTTTRHTTKSTTS--KRPTHETTTTSKRP 189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,714,883
Number of Sequences: 219361
Number of extensions: 565973
Number of successful extensions: 1598
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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