>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF|
          Length = 1097

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 23/38 (60%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
 Frame = -3

Query: 305  DPSGDF-FRSLLVEDKAPGGLSYVEFLVHVHRQIQSKM 195
            DP+G+  F+S +VED+  GG SYV+FLV VHRQIQ K+
Sbjct: 1059 DPAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQHKL 1096

>SC24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-related protein C)|
          Length = 1094

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 16/33 (48%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = -3

Query: 287  FRSLLVEDKA-PGGLSYVEFLVHVHRQIQSKMT 192
            F+  LVEDK+  GG SYV+FL H+H++I+  ++
Sbjct: 1062 FKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS 1094

>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)|
          Length = 1032

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 17/28 (60%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -3

Query: 287  FRSLLVEDKAP-GGLSYVEFLVHVHRQI 207
            FR  LVEDK   GG SYV+FL  VH++I
Sbjct: 1000 FRQFLVEDKGLYGGSSYVDFLCCVHKEI 1027

>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)|
          Length = 1090

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 287  FRSLLVEDKAPGGLSYVEFLVHVHRQI 207
            F   LVED+    LSY EFL+H+ +Q+
Sbjct: 1062 FLQSLVEDRTESALSYYEFLLHIQQQV 1088

>SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-related protein B)|
          Length = 1268

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -3

Query: 293  DFFRSLLVEDKAPGGLSYVEFLVHVHRQI 207
            +FF+ L +ED+     SY EFL+HV +QI
Sbjct: 1239 EFFQHL-IEDRTEAAFSYYEFLLHVQQQI 1266

>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)|
            (Fragment)
          Length = 1078

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 287  FRSLLVEDKAPGGLSYVEFLVHVHRQI 207
            F   ++ED+    LSY EFL+H+ +Q+
Sbjct: 1050 FLQNMIEDRTESALSYYEFLLHIQQQV 1076

>YCF1_ADICA (Q85FG7) Hypothetical 199.0 kDa protein ycf1|
          Length = 1691

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +3

Query: 144  GIDNLYQPKYHTNEASGHLALDLPVNMYEEL---HIGKATRCFVLHQQRTEE 290
            G+ NLYQPK +  +   H  L     +  E+   H+   T CF     +T+E
Sbjct: 1170 GVSNLYQPKMYEKQTPVHYNLIATKFLSPEIRNNHVNDLTMCFDTETGKTDE 1221

>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100|
          Length = 1038

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 275  LVEDKAPGGLSYVEFLVHVHRQIQ 204
            L+ED+  G   YV++++ +HRQ+Q
Sbjct: 1013 LIEDQMGGSSGYVDWILQLHRQVQ 1036

>SYGM2_ARATH (Q8L785) Glycyl-tRNA synthetase 2, chloroplast/mitochondrial|
           precursor (EC 6.1.1.14) (Glycine--tRNA ligase 2) (GlyRS
           2)
          Length = 1067

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 90  KLFSERKTVHLIFVYPHAGIDNLYQP-KYHTNEASGHLALDLPVNMYEEL 236
           +LF E +     +   HA +D L +   Y   EA   LAL LP+  Y++L
Sbjct: 257 ELFLENEKEMSSYYLEHASVDRLQKHFDYFDEEARSLLALGLPIPAYDQL 306

>NU5C_ORYSA (P12129) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 5)
           (NADH-plastoquinone oxidoreductase chain 5)
          Length = 734

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 76  LSTSTNSFQKEKRSI*SLYTHMRESIISTNQNITPMKLQVILLWICL 216
           L+ S N FQ+   S  + Y  +  +I S +  I  + + + +LWICL
Sbjct: 576 LTPSINFFQESSNSSINSYEFITNAISSVSLAIFGLFIGIYVLWICL 622

>SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat protein 1)|
            (Synaptic nuclear envelope protein 1) (Syne-1) (Myocyte
            nuclear envelope protein 1) (Myne-1) (Enaptin)
          Length = 8797

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 192  GHLALDLPVNMYEELHI--GKATRCFVLHQQRTEEISRR 302
            GHLA    +   E+LH+  GKA  CF L ++ ++ + RR
Sbjct: 1825 GHLAKLGSLGRAEDLHLLQGKAEDCFQLFEEASQVVERR 1863

>NU2C_MARPO (P06257) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 2)
           (NADH-plastoquinone oxidoreductase chain 2)
          Length = 501

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 121 KWTVFLSEKSLYSYLITLFVLRFSYKDSIVVSF 23
           K T++L   SL S LI++ +L F YK   ++SF
Sbjct: 38  KDTIWLYFISLTSLLISIIILLFQYKTDPIISF 70

>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II|
          Length = 891

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 296 GDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQSK 198
           G+ F S LVED    G  Y++FL  +H  + ++
Sbjct: 857 GEIF-STLVEDNTREGFGYLDFLTKIHESLHTQ 888

>DLTA_STAXY (Q9X2N4) D-alanine--poly(phosphoribitol) ligase subunit 1 (EC|
           6.1.1.13) (D-alanine-activating enzyme) (DAE)
           (D-alanine-D-alanyl carrier protein ligase) (DCL)
          Length = 487

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 132 YPHAGIDNLYQPKYHTNEASGHLALDLPVNMYEELHIGKATRCFVLHQQRTEEI 293
           +P A I N Y P   T   +  L  +  +N Y  L +GKA     L     EE+
Sbjct: 277 FPSAYIYNTYGPTEATVAVTSILITEAVINQYNPLPVGKARPGTQLSLAENEEL 330


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,968,925
Number of Sequences: 219361
Number of extensions: 1025038
Number of successful extensions: 2418
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2418
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)