ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl11a01 |
|---|---|
| Clone Library Name | barley_pub |
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 71.2 bits (173), Expect = 6e-13 Identities = 32/32 (100%), Positives = 32/32 (100%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI Sbjct: 868 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 899
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 64.7 bits (156), Expect = 6e-11 Identities = 27/32 (84%), Positives = 31/32 (96%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NRCGAGVLPYEL+APSS PG+TCRGVPNS++I Sbjct: 887 NRCGAGVLPYELLAPSSPPGVTCRGVPNSISI 918
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 53.9 bits (128), Expect = 1e-07 Identities = 21/32 (65%), Positives = 28/32 (87%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NRCGAG++PYEL+ P S PG+T RG+PNS++I Sbjct: 865 NRCGAGIVPYELLKPFSEPGVTGRGIPNSISI 896
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 48.9 bits (115), Expect = 3e-06 Identities = 20/32 (62%), Positives = 25/32 (78%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NRCGAG+LPY+LM P S G+T G+PNS +I Sbjct: 893 NRCGAGILPYQLMKPFSDSGVTGMGIPNSTSI 924
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 48.9 bits (115), Expect = 3e-06 Identities = 20/32 (62%), Positives = 25/32 (78%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NRCGAG+LPY+LM P S G+T G+PNS +I Sbjct: 910 NRCGAGILPYQLMKPFSDAGVTGMGIPNSTSI 941
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 43.9 bits (102), Expect = 1e-04 Identities = 18/32 (56%), Positives = 24/32 (75%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NRCG +PY L+ PSS G+T RG+PNS++I Sbjct: 826 NRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 43.5 bits (101), Expect = 1e-04 Identities = 18/32 (56%), Positives = 24/32 (75%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G +PY L+ PSS G+TCRG+PNS++I Sbjct: 835 NRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI 866
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/32 (56%), Positives = 23/32 (71%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G LPY L+ PSS G+T RG+PNS++I Sbjct: 808 NRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/32 (53%), Positives = 23/32 (71%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G +PY L+ PSS G+T RG+PNS++I Sbjct: 822 NRYGPAKMPYTLLYPSSEEGLTFRGIPNSISI 853
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/32 (56%), Positives = 24/32 (75%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR GAGV+ YEL+ P+S G+T GVP S++I Sbjct: 865 NRAGAGVVKYELLKPTSEHGVTGMGVPYSISI 896
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/32 (56%), Positives = 24/32 (75%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G LPY L+ P+S G+TCRG+PNS++I Sbjct: 835 NRLGPVQLPYTLLHPNS-EGLTCRGIPNSISI 865
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/32 (56%), Positives = 23/32 (71%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G +PY L+ PSS G+T RG+PNSV+I Sbjct: 828 NRTGLVKMPYTLLFPSSEGGVTGRGIPNSVSI 859
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 38.9 bits (89), Expect = 0.003 Identities = 17/32 (53%), Positives = 23/32 (71%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G +PY L+ PSS G+T RG+PNS++I Sbjct: 830 NRHGPVEMPYTLLYPSSKEGLTFRGIPNSISI 861
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/32 (53%), Positives = 23/32 (71%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 +R G LPY L+ PSS G+T RG+PNS++I Sbjct: 833 HRVGPVQLPYTLLHPSSKEGLTFRGIPNSISI 864
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 36.6 bits (83), Expect = 0.017 Identities = 16/32 (50%), Positives = 23/32 (71%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G +PY L+ P+S G+T +G+PNSV+I Sbjct: 828 NRSGPVNVPYTLLFPTSEEGLTGKGIPNSVSI 859
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 35.8 bits (81), Expect = 0.029 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G LPY L+ SS G+T +G+PNS++I Sbjct: 833 NRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI 864
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 35.4 bits (80), Expect = 0.037 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G PY L+ P+S G+T +G+PNSV+I Sbjct: 830 NRSGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 861
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 35.4 bits (80), Expect = 0.037 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 194 NR G PY L+ P+S G+T +G+PNSV+I Sbjct: 829 NRTGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 860
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 34.3 bits (77), Expect = 0.083 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 6/38 (15%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGP------GITCRGVPNSVTI 194 NR G PY LM P++ GIT RG+PNS++I Sbjct: 826 NRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 33.1 bits (74), Expect = 0.19 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 5/37 (13%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCR-----GVPNSVTI 194 NR GAGV+PY L+ P +G + + G+PNS++I Sbjct: 896 NRHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 31.2 bits (69), Expect = 0.71 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPGITCRGV 212 NR G +PY L+ PSS G+T RG+ Sbjct: 716 NRTGPAKMPYTLLYPSSEEGLTFRGI 741
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 31.2 bits (69), Expect = 0.71 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = -2 Query: 289 NRCGAGVLPYELMAPS-SGPGITCRGVPNSVTI 194 NR G +PY ++ P+ G+T RG+PNS++I Sbjct: 830 NRNGPVKMPYTVLLPTCEDEGLTFRGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 31.2 bits (69), Expect = 0.71 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 6/38 (15%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGP------GITCRGVPNSVTI 194 NR G PY L+ P++ GIT +G+PNS++I Sbjct: 829 NRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>BGAL_KLEPN (P06219) Beta-galactosidase (EC 3.2.1.23) (Lactase)| Length = 1034 Score = 30.8 bits (68), Expect = 0.92 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = +2 Query: 50 WRFGLR-GEGPNQWRFSYMYVLFPETFPAQSISRLKNSHGPFQFTLCGLDGDAVRDASAG 226 W +G G+ PN +F ++FP+ P S+ K++ FQFTL VR S Sbjct: 593 WAYGGDFGDKPNDRQFCMNGLVFPDRTPHPSLVEAKHAQQYFQFTLLSTSPLRVRIISEY 652 Query: 227 DARP 238 RP Sbjct: 653 LFRP 656
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 30.8 bits (68), Expect = 0.92 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 7/39 (17%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSS-------GPGITCRGVPNSVTI 194 NR G +PY L+ P++ G G+T G+PNS++I Sbjct: 839 NRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 6/38 (15%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGP------GITCRGVPNSVTI 194 NR G PY L+ P++ G+T +G+PNS++I Sbjct: 825 NRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>Y1013_HAEIN (Q57151) Hypothetical protein HI1013| Length = 258 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/67 (29%), Positives = 29/67 (43%) Frame = +2 Query: 44 NQWRFGLRGEGPNQWRFSYMYVLFPETFPAQSISRLKNSHGPFQFTLCGLDGDAVRDASA 223 N+ F R E + F Y+ L+P +PAQ + + + HG GD + Sbjct: 13 NEVPFLDRFEAAAKAGFKYVEFLWPYDYPAQELKAILDKHGLKVVLFNTPAGDVNKGEWG 72 Query: 224 GDARPGR 244 G A PGR Sbjct: 73 GSAIPGR 79
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 10/42 (23%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGPG----------ITCRGVPNSVTI 194 NR GAG++PY L+ PS G + G+PNS++I Sbjct: 895 NRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 6/38 (15%) Frame = -2 Query: 289 NRCGAGVLPYELMAPSSGP------GITCRGVPNSVTI 194 NR G PY L+ P++ G++ RG+PNS++I Sbjct: 833 NRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>ABF2_BACSU (P94552) Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) (Arabinosidase| 2) Length = 495 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 119 ETFPAQSISRLKNSHGPFQFTLCGLD 196 ETFP SIS K + G T+C +D Sbjct: 395 ETFPQISISASKQAEGDINITICNID 420
>MFRN_DROME (Q9VAY3) Mitoferrin| Length = 379 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +2 Query: 170 FQFTLCGLDGDAVRDASAGDARPGRRRHELVR 265 F+F LCGLD D + + G + P + + L R Sbjct: 278 FKFYLCGLDADQYKSSITGSSEPRKADYVLPR 309
>PARE_HAEIN (P43703) DNA topoisomerase 4 subunit B (EC 5.99.1.-) (Topoisomerase| IV subunit B) Length = 632 Score = 28.5 bits (62), Expect = 4.6 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +1 Query: 127 PGPKYIEAEKFPRSVSIHSLRARW*RCSG 213 P PKY ++ KF S H LRA+ CSG Sbjct: 169 PNPKYFDSAKFSVSRLRHLLRAKAVLCSG 197
>HLY1_AERHY (P55870) Hemolysin ahh1 precursor| Length = 577 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -3 Query: 255 SWRRRPGRASPAEASRTASPSSPQRVN*NGPWE 157 SWRRRP AS A +SP++P+ N P E Sbjct: 295 SWRRRPSSASSA-----SSPTTPRITGLNAPAE 322
>WN10B_PLEJO (P28132) Protein Wnt-10b (Fragment)| Length = 117 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -2 Query: 169 RTVGIFQPRYTLGRERLREKYVHIRESPLIWALATKAESP 50 + G+F PR L ++RL ++ V+ +SP TK +SP Sbjct: 38 KNTGVFHPR-RLKKKRLAKELVYFEKSPDFCERDTKVDSP 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,286,883 Number of Sequences: 219361 Number of extensions: 982822 Number of successful extensions: 3067 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 2982 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3064 length of database: 80,573,946 effective HSP length: 72 effective length of database: 64,779,954 effective search space used: 1554718896 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
