ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl11a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxyge... 533 e-148
2ref|XM_462649.1| Oryza sativa (japonica cultivar-group), predic... 115 8e-23
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 115 8e-23
4emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 115 8e-23
5ref|XM_470535.1| Oryza sativa (japonica cultivar-group), predic... 40 3.8
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.8
7gb|AE011952.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 3.8
8gb|DQ187985.1| Pseudomonas syringae tabtoxin biosynthetic gene c... 40 3.8
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
10gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
11dbj|AK109440.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
12dbj|AK121637.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
13gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
14gb|M88485.1|PSETABA Pseudomonas syringae tabA and tabB genes, co... 40 3.8
15gb|M63291.1|DROADHDS Drosophila silvestris alcohol dehydrogenase... 40 3.8

>emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxygenase-like protein
            (lox gene)
          Length = 3123

 Score =  533 bits (269), Expect = e-148
 Identities = 275/277 (99%)
 Strand = Plus / Minus

                                                                        
Query: 14   tgcaattaaatcttctcctatctgggcccaaatcaatggcgattcggccttcgtggcgag 73
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3077 tgcaattaaatcttctcctatctgggcccaaatcaatggcgattcggccttcgtggcgag 3018

                                                                        
Query: 74   ggcccaaatcaatggcgattctcttatatgtacgtacttttccctgagacgttcccggcc 133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3017 ggcccaaatcaatggcgattctcttatatgtacgtacttttccctgagacgttcccggcc 2958

                                                                        
Query: 134  caaagtatatcgaggctgaaaaattcccacggtccgtttcaattcactctctgcgggcta 193
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2957 caaagtatatcgaggctgaaaaattcccacggtccgcttcaattcactctctgcgggcta 2898

                                                                        
Query: 194  gatggtgacgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccat 253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2897 gatggtgacgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccat 2838

                                                 
Query: 254  gagctcgtacggcagcacaccggcgccacagcggttg 290
            |||||||||||||||||| ||||||||||||||||||
Sbjct: 2837 gagctcgtacggcagcacgccggcgccacagcggttg 2801



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>ref|XM_462649.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2700

 Score =  115 bits (58), Expect = 8e-23
 Identities = 82/90 (91%)
 Strand = Plus / Minus

                                                                        
Query: 201  acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 260
            |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 2690 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 2631

                                          
Query: 261  tacggcagcacaccggcgccacagcggttg 290
            ||||||||||| |||||||| || ||||||
Sbjct: 2630 tacggcagcacgccggcgccgcaacggttg 2601



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  115 bits (58), Expect = 8e-23
 Identities = 82/90 (91%)
 Strand = Plus / Minus

                                                                            
Query: 201      acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 260
                |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 22283720 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 22283661

                                              
Query: 261      tacggcagcacaccggcgccacagcggttg 290
                ||||||||||| |||||||| || ||||||
Sbjct: 22283660 tacggcagcacgccggcgccgcaacggttg 22283631



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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
             complete sequence
          Length = 147214

 Score =  115 bits (58), Expect = 8e-23
 Identities = 82/90 (91%)
 Strand = Plus / Minus

                                                                         
Query: 201   acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 260
             |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 34622 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 34563

                                           
Query: 261   tacggcagcacaccggcgccacagcggttg 290
             ||||||||||| |||||||| || ||||||
Sbjct: 34562 tacggcagcacgccggcgccgcaacggttg 34533



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>ref|XM_470535.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2718

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 258  tcgtacggcagcacaccggcgccacagcggtt 289
            |||||||||||||| |||||||| || |||||
Sbjct: 2651 tcgtacggcagcaccccggcgccgcaccggtt 2620



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 258     tcgtacggcagcacaccggcgccacagcggtt 289
               |||||||||||||| |||||||| || |||||
Sbjct: 4174701 tcgtacggcagcaccccggcgccgcaccggtt 4174670



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>gb|AE011952.1| Xanthomonas axonopodis pv. citri str. 306,  section 330 of 469 of the
            complete genome
          Length = 11366

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  tacggcagcacaccggcgcc 280
            ||||||||||||||||||||
Sbjct: 9623 tacggcagcacaccggcgcc 9604



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>gb|DQ187985.1| Pseudomonas syringae tabtoxin biosynthetic gene cluster, complete
            sequence
          Length = 22972

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 232  ccggcccggacgacggcgcc 251
            ||||||||||||||||||||
Sbjct: 3634 ccggcccggacgacggcgcc 3653



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 258     tcgtacggcagcacaccggcgccacagcggtt 289
               |||||||||||||| |||||||| || |||||
Sbjct: 4174810 tcgtacggcagcaccccggcgccgcaccggtt 4174779



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>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0050H14, complete sequence
          Length = 142245

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 258   tcgtacggcagcacaccggcgccacagcggtt 289
             |||||||||||||| |||||||| || |||||
Sbjct: 75338 tcgtacggcagcaccccggcgccgcaccggtt 75307



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>dbj|AK109440.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A07, full
            insert sequence
          Length = 1212

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 258  tcgtacggcagcacaccggcgccacagcggtt 289
            |||||||||||||| |||||||| || |||||
Sbjct: 1055 tcgtacggcagcaccccggcgccgcaccggtt 1024



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>dbj|AK121637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052A03, full
            insert sequence
          Length = 3067

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 258  tcgtacggcagcacaccggcgccacagcggtt 289
            |||||||||||||| |||||||| || |||||
Sbjct: 2890 tcgtacggcagcaccccggcgccgcaccggtt 2859



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>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBb0076N15, complete sequence
          Length = 134307

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 258  tcgtacggcagcacaccggcgccacagcggtt 289
            |||||||||||||| |||||||| || |||||
Sbjct: 3316 tcgtacggcagcaccccggcgccgcaccggtt 3285



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>gb|M88485.1|PSETABA Pseudomonas syringae tabA and tabB genes, complete cds
          Length = 3378

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 232  ccggcccggacgacggcgcc 251
            ||||||||||||||||||||
Sbjct: 2761 ccggcccggacgacggcgcc 2742



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>gb|M63291.1|DROADHDS Drosophila silvestris alcohol dehydrogenase gene, complete cds
          Length = 1635

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 95  tcttatatgtacgtacttttccctgaga 122
           |||||| ||||| |||||||||||||||
Sbjct: 189 tcttatttgtacatacttttccctgaga 162


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,549,282
Number of Sequences: 3902068
Number of extensions: 1549282
Number of successful extensions: 25066
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24988
Number of HSP's gapped (non-prelim): 76
length of query: 290
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 268
effective length of database: 17,147,199,772
effective search space: 4595449538896
effective search space used: 4595449538896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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