Clone Name | rbastl11a01 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxygenase-like protein (lox gene) Length = 3123 Score = 533 bits (269), Expect = e-148 Identities = 275/277 (99%) Strand = Plus / Minus Query: 14 tgcaattaaatcttctcctatctgggcccaaatcaatggcgattcggccttcgtggcgag 73 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3077 tgcaattaaatcttctcctatctgggcccaaatcaatggcgattcggccttcgtggcgag 3018 Query: 74 ggcccaaatcaatggcgattctcttatatgtacgtacttttccctgagacgttcccggcc 133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3017 ggcccaaatcaatggcgattctcttatatgtacgtacttttccctgagacgttcccggcc 2958 Query: 134 caaagtatatcgaggctgaaaaattcccacggtccgtttcaattcactctctgcgggcta 193 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2957 caaagtatatcgaggctgaaaaattcccacggtccgcttcaattcactctctgcgggcta 2898 Query: 194 gatggtgacgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccat 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2897 gatggtgacgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccat 2838 Query: 254 gagctcgtacggcagcacaccggcgccacagcggttg 290 |||||||||||||||||| |||||||||||||||||| Sbjct: 2837 gagctcgtacggcagcacgccggcgccacagcggttg 2801
>ref|XM_462649.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2700 Score = 115 bits (58), Expect = 8e-23 Identities = 82/90 (91%) Strand = Plus / Minus Query: 201 acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 260 |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 2690 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 2631 Query: 261 tacggcagcacaccggcgccacagcggttg 290 ||||||||||| |||||||| || |||||| Sbjct: 2630 tacggcagcacgccggcgccgcaacggttg 2601
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 115 bits (58), Expect = 8e-23 Identities = 82/90 (91%) Strand = Plus / Minus Query: 201 acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 260 |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 22283720 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 22283661 Query: 261 tacggcagcacaccggcgccacagcggttg 290 ||||||||||| |||||||| || |||||| Sbjct: 22283660 tacggcagcacgccggcgccgcaacggttg 22283631
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 115 bits (58), Expect = 8e-23 Identities = 82/90 (91%) Strand = Plus / Minus Query: 201 acgctgttcgggacgcctcggcaggtgatgcccggcccggacgacggcgccatgagctcg 260 |||||||| || ||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 34622 acgctgtttggcacgccccggcaggtgatgcccggtccggacgacggcgccatcagctcg 34563 Query: 261 tacggcagcacaccggcgccacagcggttg 290 ||||||||||| |||||||| || |||||| Sbjct: 34562 tacggcagcacgccggcgccgcaacggttg 34533
>ref|XM_470535.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2718 Score = 40.1 bits (20), Expect = 3.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 258 tcgtacggcagcacaccggcgccacagcggtt 289 |||||||||||||| |||||||| || ||||| Sbjct: 2651 tcgtacggcagcaccccggcgccgcaccggtt 2620
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 258 tcgtacggcagcacaccggcgccacagcggtt 289 |||||||||||||| |||||||| || ||||| Sbjct: 4174701 tcgtacggcagcaccccggcgccgcaccggtt 4174670
>gb|AE011952.1| Xanthomonas axonopodis pv. citri str. 306, section 330 of 469 of the complete genome Length = 11366 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tacggcagcacaccggcgcc 280 |||||||||||||||||||| Sbjct: 9623 tacggcagcacaccggcgcc 9604
>gb|DQ187985.1| Pseudomonas syringae tabtoxin biosynthetic gene cluster, complete sequence Length = 22972 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 ccggcccggacgacggcgcc 251 |||||||||||||||||||| Sbjct: 3634 ccggcccggacgacggcgcc 3653
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 258 tcgtacggcagcacaccggcgccacagcggtt 289 |||||||||||||| |||||||| || ||||| Sbjct: 4174810 tcgtacggcagcaccccggcgccgcaccggtt 4174779
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 40.1 bits (20), Expect = 3.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 258 tcgtacggcagcacaccggcgccacagcggtt 289 |||||||||||||| |||||||| || ||||| Sbjct: 75338 tcgtacggcagcaccccggcgccgcaccggtt 75307
>dbj|AK109440.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A07, full insert sequence Length = 1212 Score = 40.1 bits (20), Expect = 3.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 258 tcgtacggcagcacaccggcgccacagcggtt 289 |||||||||||||| |||||||| || ||||| Sbjct: 1055 tcgtacggcagcaccccggcgccgcaccggtt 1024
>dbj|AK121637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052A03, full insert sequence Length = 3067 Score = 40.1 bits (20), Expect = 3.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 258 tcgtacggcagcacaccggcgccacagcggtt 289 |||||||||||||| |||||||| || ||||| Sbjct: 2890 tcgtacggcagcaccccggcgccgcaccggtt 2859
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 40.1 bits (20), Expect = 3.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 258 tcgtacggcagcacaccggcgccacagcggtt 289 |||||||||||||| |||||||| || ||||| Sbjct: 3316 tcgtacggcagcaccccggcgccgcaccggtt 3285
>gb|M88485.1|PSETABA Pseudomonas syringae tabA and tabB genes, complete cds Length = 3378 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ccggcccggacgacggcgcc 251 |||||||||||||||||||| Sbjct: 2761 ccggcccggacgacggcgcc 2742
>gb|M63291.1|DROADHDS Drosophila silvestris alcohol dehydrogenase gene, complete cds Length = 1635 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 95 tcttatatgtacgtacttttccctgaga 122 |||||| ||||| ||||||||||||||| Sbjct: 189 tcttatttgtacatacttttccctgaga 162 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,549,282 Number of Sequences: 3902068 Number of extensions: 1549282 Number of successful extensions: 25066 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24988 Number of HSP's gapped (non-prelim): 76 length of query: 290 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 268 effective length of database: 17,147,199,772 effective search space: 4595449538896 effective search space used: 4595449538896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)