ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl10h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_958751.1| Neurospora crassa OR74A hypothetical protein (N... 40 0.92
2ref|XM_331949.1| Neurospora crassa OR74A hypothetical protein (N... 40 0.92
3emb|AL392108.4| Human DNA sequence from clone RP11-551P18 on chr... 38 3.6
4gb|AC130831.4| Mus musculus BAC clone RP24-80P9 from 14, complet... 38 3.6

>ref|XM_958751.1| Neurospora crassa OR74A hypothetical protein (NCU02751.1) partial
            mRNA
          Length = 3477

 Score = 40.1 bits (20), Expect = 0.92
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   ttttcgtttgacttatctct 31
            ||||||||||||||||||||
Sbjct: 2639 ttttcgtttgacttatctct 2620



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>ref|XM_331949.1| Neurospora crassa OR74A hypothetical protein (NCU02751.1) partial
            mRNA
          Length = 3477

 Score = 40.1 bits (20), Expect = 0.92
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   ttttcgtttgacttatctct 31
            ||||||||||||||||||||
Sbjct: 2639 ttttcgtttgacttatctct 2620



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>emb|AL392108.4| Human DNA sequence from clone RP11-551P18 on chromosome 10 Contains the
             5' UTR of a variant of a  novel gene, complete sequence
          Length = 145179

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    aaactgcgaaagaatacat 50
             |||||||||||||||||||
Sbjct: 86753 aaactgcgaaagaatacat 86771



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>gb|AC130831.4| Mus musculus BAC clone RP24-80P9 from 14, complete sequence
          Length = 233804

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 29     tctaaactgcgaaagaatacatt 51
              ||||||||| |||||||||||||
Sbjct: 203212 tctaaactgtgaaagaatacatt 203234


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 516,470
Number of Sequences: 3902068
Number of extensions: 516470
Number of successful extensions: 33839
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33834
Number of HSP's gapped (non-prelim): 5
length of query: 86
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 65
effective length of database: 17,151,101,840
effective search space: 1114821619600
effective search space used: 1114821619600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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