ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl10g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible l... 167 8e-39
2gb|AC153954.3| Mus musculus 10 BAC RP24-236E2 (Roswell Park Canc... 40 1.2
3gb|AC123599.6| Mus musculus chromosome 5, clone RP23-231D13, com... 38 4.7
4gb|AC102688.10| Mus musculus chromosome 5, clone RP24-138J15, co... 38 4.7
5emb|Y13834.1|HSY13834 Homo sapiens mRNA for farnesylated-protein... 38 4.7
6dbj|AK074784.1| Homo sapiens cDNA FLJ90303 fis, clone NT2RP20006... 38 4.7
7dbj|AK075007.1| Homo sapiens cDNA FLJ90526 fis, clone NT2RP40010... 38 4.7
8gb|AC090511.3|AC090511 Homo sapiens chromosome 15 clone CTD-2370... 38 4.7
9gb|AC010999.6|AC010999 Homo sapiens chromosome 15 clone RP11-323... 38 4.7
10gb|AF180067.1|AF180067 Panorpa japonica 16S ribosomal RNA gene, ... 38 4.7
11ref|NM_005857.2| Homo sapiens zinc metallopeptidase (STE24 homol... 38 4.7
12dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome 38 4.7
13gb|AY110134.1| Zea mays CL909_1 mRNA sequence 38 4.7
14gb|AF064867.1|AF064867 Homo sapiens CAAX prenyl protease (STE24)... 38 4.7
15gb|BC037283.1| Homo sapiens zinc metallopeptidase (STE24 homolog... 38 4.7
16dbj|AP005431.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 38 4.7
17dbj|AB016068.1| Homo sapiens mRNA for Ste24p, complete cds 38 4.7

>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA,
            complete cds
          Length = 3054

 Score =  167 bits (84), Expect = 8e-39
 Identities = 101/104 (97%), Gaps = 2/104 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    tatcatcgcgtcctttaattata-tttggtgctcattcccattatacccaccgccgggcc 59
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3037 tatcatcgtgtcctttaattataatttggtgctcattcccattatacccaccgccgggcc 2978

                                                        
Query: 60   a-gagactgaagacactcttatttacgcctagttgagttacaca 102
            | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2977 aagagactgaagacactcttatttacgcctagttgagttacaca 2934



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>gb|AC153954.3| Mus musculus 10 BAC RP24-236E2 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 151818

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    ttaattatatttggtgctcattcc 38
             |||||||||||||||| |||||||
Sbjct: 27343 ttaattatatttggtgttcattcc 27320



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>gb|AC123599.6| Mus musculus chromosome 5, clone RP23-231D13, complete sequence
          Length = 191607

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 33   cattcccattatacccacc 51
            |||||||||||||||||||
Sbjct: 7126 cattcccattatacccacc 7144



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>gb|AC102688.10| Mus musculus chromosome 5, clone RP24-138J15, complete sequence
          Length = 166655

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     cattcccattatacccacc 51
              |||||||||||||||||||
Sbjct: 110263 cattcccattatacccacc 110281



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>emb|Y13834.1|HSY13834 Homo sapiens mRNA for farnesylated-proteins converting enzyme 1
          Length = 2966

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  cagagactgaagacactcttatt 81
           |||||||||||| ||||||||||
Sbjct: 287 cagagactgaaggcactcttatt 309



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>dbj|AK074784.1| Homo sapiens cDNA FLJ90303 fis, clone NT2RP2000649, highly similar
           to CAAX prenyl protease 1 homolog (EC 3.4.24.84)
          Length = 3016

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  cagagactgaagacactcttatt 81
           |||||||||||| ||||||||||
Sbjct: 332 cagagactgaaggcactcttatt 354



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>dbj|AK075007.1| Homo sapiens cDNA FLJ90526 fis, clone NT2RP4001009, highly similar
           to CAAX prenyl protease 1 homolog (EC 3.4.24.84)
          Length = 3033

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  cagagactgaagacactcttatt 81
           |||||||||||| ||||||||||
Sbjct: 355 cagagactgaaggcactcttatt 377



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>gb|AC090511.3|AC090511 Homo sapiens chromosome 15 clone CTD-2370O8 map 15q21.3, complete
             sequence
          Length = 88013

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    tcctttaattatatttggt 29
             |||||||||||||||||||
Sbjct: 22200 tcctttaattatatttggt 22218



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>gb|AC010999.6|AC010999 Homo sapiens chromosome 15 clone RP11-323F24 map 15q21.3, complete
              sequence
          Length = 221986

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 11     tcctttaattatatttggt 29
              |||||||||||||||||||
Sbjct: 218592 tcctttaattatatttggt 218610



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>gb|AF180067.1|AF180067 Panorpa japonica 16S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 512

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 9   cgtcctttaattatatttg 27
           |||||||||||||||||||
Sbjct: 311 cgtcctttaattatatttg 329



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>ref|NM_005857.2| Homo sapiens zinc metallopeptidase (STE24 homolog, yeast)
           (ZMPSTE24), mRNA
          Length = 3103

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  cagagactgaagacactcttatt 81
           |||||||||||| ||||||||||
Sbjct: 419 cagagactgaaggcactcttatt 441



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>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 12      cctttaattatatttggtg 30
               |||||||||||||||||||
Sbjct: 1341990 cctttaattatatttggtg 1341972



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>gb|AY110134.1| Zea mays CL909_1 mRNA sequence
          Length = 2635

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 17   aattatatttggtgctcat 35
            |||||||||||||||||||
Sbjct: 1607 aattatatttggtgctcat 1625



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>gb|AF064867.1|AF064867 Homo sapiens CAAX prenyl protease (STE24) mRNA, complete cds
          Length = 1859

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  cagagactgaagacactcttatt 81
           |||||||||||| ||||||||||
Sbjct: 377 cagagactgaaggcactcttatt 399



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>gb|BC037283.1| Homo sapiens zinc metallopeptidase (STE24 homolog, yeast), mRNA
           (cDNA clone MGC:33086 IMAGE:5269064), complete cds
          Length = 1739

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  cagagactgaagacactcttatt 81
           |||||||||||| ||||||||||
Sbjct: 380 cagagactgaaggcactcttatt 402



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>dbj|AP005431.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-193E15, complete
              sequence
          Length = 177785

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 11     tcctttaattatatttggt 29
              |||||||||||||||||||
Sbjct: 158457 tcctttaattatatttggt 158475



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>dbj|AB016068.1| Homo sapiens mRNA for Ste24p, complete cds
          Length = 2963

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  cagagactgaagacactcttatt 81
           |||||||||||| ||||||||||
Sbjct: 432 cagagactgaaggcactcttatt 454


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 838,233
Number of Sequences: 3902068
Number of extensions: 838233
Number of successful extensions: 62219
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62191
Number of HSP's gapped (non-prelim): 26
length of query: 105
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 84
effective length of database: 17,151,101,840
effective search space: 1440692554560
effective search space used: 1440692554560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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