Clone Name | rbastl10g06 |
---|---|
Clone Library Name | barley_pub |
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 167 bits (84), Expect = 8e-39 Identities = 101/104 (97%), Gaps = 2/104 (1%) Strand = Plus / Minus Query: 1 tatcatcgcgtcctttaattata-tttggtgctcattcccattatacccaccgccgggcc 59 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 3037 tatcatcgtgtcctttaattataatttggtgctcattcccattatacccaccgccgggcc 2978 Query: 60 a-gagactgaagacactcttatttacgcctagttgagttacaca 102 | |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2977 aagagactgaagacactcttatttacgcctagttgagttacaca 2934
>gb|AC153954.3| Mus musculus 10 BAC RP24-236E2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 151818 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 ttaattatatttggtgctcattcc 38 |||||||||||||||| ||||||| Sbjct: 27343 ttaattatatttggtgttcattcc 27320
>gb|AC123599.6| Mus musculus chromosome 5, clone RP23-231D13, complete sequence Length = 191607 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 cattcccattatacccacc 51 ||||||||||||||||||| Sbjct: 7126 cattcccattatacccacc 7144
>gb|AC102688.10| Mus musculus chromosome 5, clone RP24-138J15, complete sequence Length = 166655 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 cattcccattatacccacc 51 ||||||||||||||||||| Sbjct: 110263 cattcccattatacccacc 110281
>emb|Y13834.1|HSY13834 Homo sapiens mRNA for farnesylated-proteins converting enzyme 1 Length = 2966 Score = 38.2 bits (19), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 59 cagagactgaagacactcttatt 81 |||||||||||| |||||||||| Sbjct: 287 cagagactgaaggcactcttatt 309
>dbj|AK074784.1| Homo sapiens cDNA FLJ90303 fis, clone NT2RP2000649, highly similar to CAAX prenyl protease 1 homolog (EC 3.4.24.84) Length = 3016 Score = 38.2 bits (19), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 59 cagagactgaagacactcttatt 81 |||||||||||| |||||||||| Sbjct: 332 cagagactgaaggcactcttatt 354
>dbj|AK075007.1| Homo sapiens cDNA FLJ90526 fis, clone NT2RP4001009, highly similar to CAAX prenyl protease 1 homolog (EC 3.4.24.84) Length = 3033 Score = 38.2 bits (19), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 59 cagagactgaagacactcttatt 81 |||||||||||| |||||||||| Sbjct: 355 cagagactgaaggcactcttatt 377
>gb|AC090511.3|AC090511 Homo sapiens chromosome 15 clone CTD-2370O8 map 15q21.3, complete sequence Length = 88013 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tcctttaattatatttggt 29 ||||||||||||||||||| Sbjct: 22200 tcctttaattatatttggt 22218
>gb|AC010999.6|AC010999 Homo sapiens chromosome 15 clone RP11-323F24 map 15q21.3, complete sequence Length = 221986 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tcctttaattatatttggt 29 ||||||||||||||||||| Sbjct: 218592 tcctttaattatatttggt 218610
>gb|AF180067.1|AF180067 Panorpa japonica 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 512 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 cgtcctttaattatatttg 27 ||||||||||||||||||| Sbjct: 311 cgtcctttaattatatttg 329
>ref|NM_005857.2| Homo sapiens zinc metallopeptidase (STE24 homolog, yeast) (ZMPSTE24), mRNA Length = 3103 Score = 38.2 bits (19), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 59 cagagactgaagacactcttatt 81 |||||||||||| |||||||||| Sbjct: 419 cagagactgaaggcactcttatt 441
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 cctttaattatatttggtg 30 ||||||||||||||||||| Sbjct: 1341990 cctttaattatatttggtg 1341972
>gb|AY110134.1| Zea mays CL909_1 mRNA sequence Length = 2635 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 aattatatttggtgctcat 35 ||||||||||||||||||| Sbjct: 1607 aattatatttggtgctcat 1625
>gb|AF064867.1|AF064867 Homo sapiens CAAX prenyl protease (STE24) mRNA, complete cds Length = 1859 Score = 38.2 bits (19), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 59 cagagactgaagacactcttatt 81 |||||||||||| |||||||||| Sbjct: 377 cagagactgaaggcactcttatt 399
>gb|BC037283.1| Homo sapiens zinc metallopeptidase (STE24 homolog, yeast), mRNA (cDNA clone MGC:33086 IMAGE:5269064), complete cds Length = 1739 Score = 38.2 bits (19), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 59 cagagactgaagacactcttatt 81 |||||||||||| |||||||||| Sbjct: 380 cagagactgaaggcactcttatt 402
>dbj|AP005431.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-193E15, complete sequence Length = 177785 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tcctttaattatatttggt 29 ||||||||||||||||||| Sbjct: 158457 tcctttaattatatttggt 158475
>dbj|AB016068.1| Homo sapiens mRNA for Ste24p, complete cds Length = 2963 Score = 38.2 bits (19), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 59 cagagactgaagacactcttatt 81 |||||||||||| |||||||||| Sbjct: 432 cagagactgaaggcactcttatt 454 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 838,233 Number of Sequences: 3902068 Number of extensions: 838233 Number of successful extensions: 62219 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62191 Number of HSP's gapped (non-prelim): 26 length of query: 105 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 84 effective length of database: 17,151,101,840 effective search space: 1440692554560 effective search space used: 1440692554560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)