Clone Name | rbastl10g04 |
---|---|
Clone Library Name | barley_pub |
>emb|AL359694.17| Human DNA sequence from clone RP11-524C21 on chromosome 6 Contains a pseudogene similar to mesenchymal stem cell protein DSC92, complete sequence Length = 95369 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 ctaattttcagatttgattg 65 |||||||||||||||||||| Sbjct: 9672 ctaattttcagatttgattg 9653
>gb|AC159211.2| Mus musculus BAC clone RP23-33F21 from chromosome 12, complete sequence Length = 201550 Score = 40.1 bits (20), Expect = 1.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 113 ttgcttgtgtaatgacaggaaaacatag 140 ||||||||| ||| |||||||||||||| Sbjct: 201498 ttgcttgtgaaataacaggaaaacatag 201525
>emb|CT030164.9| Mouse DNA sequence from clone RP23-311P8 on chromosome 12, complete sequence Length = 224188 Score = 40.1 bits (20), Expect = 1.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 113 ttgcttgtgtaatgacaggaaaacatag 140 ||||||||| ||| |||||||||||||| Sbjct: 161365 ttgcttgtgaaataacaggaaaacatag 161338
>gb|AF026204.1| Caenorhabditis elegans cosmid C30E1, complete sequence Length = 21698 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 ttttcagatttgattggaa 68 ||||||||||||||||||| Sbjct: 11408 ttttcagatttgattggaa 11426
>gb|AC122403.3| Mus musculus BAC clone RP24-112A10 from chromosome 16, complete sequence Length = 169481 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 122 taatgacaggaaaacatag 140 ||||||||||||||||||| Sbjct: 73731 taatgacaggaaaacatag 73713
>gb|AC110501.26| Mus musculus chromosome 9, clone RP24-448H20, complete sequence Length = 154359 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 ttttcagatttgattggaa 68 ||||||||||||||||||| Sbjct: 96005 ttttcagatttgattggaa 95987
>ref|XM_455582.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F11022g predicted mRNA Length = 2667 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 1 ctttaaacaaaatatccgtctgt 23 ||||||||||||||| ||||||| Sbjct: 464 ctttaaacaaaatatacgtctgt 486
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 ggaagaaccgaacaaacagcacc 87 ||||||| ||||||||||||||| Sbjct: 3167773 ggaagaagcgaacaaacagcacc 3167751
>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0068E24, complete sequence Length = 141492 Score = 38.2 bits (19), Expect = 7.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 16 ccgtctgtttttgtattgaactgcatg 42 |||||| ||||| |||||||||||||| Sbjct: 48083 ccgtctttttttttattgaactgcatg 48109
>emb|AL157903.16| Human DNA sequence from clone RP4-683H8 on chromosome 1p22.3-31.2 Contains part of the LPHN2 gene for latrophilin 2, complete sequence Length = 74630 Score = 38.2 bits (19), Expect = 7.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 122 taatgacaggaaaacatagggtacaga 148 |||||||||||||||||| | |||||| Sbjct: 61144 taatgacaggaaaacatatgttacaga 61170
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 ctttaaacaaaatatccgtctgt 23 ||||||||||||||| ||||||| Sbjct: 1018417 ctttaaacaaaatatacgtctgt 1018395
>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05, complete sequence Length = 101799 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 ggaagaaccgaacaaacagcacc 87 ||||||| ||||||||||||||| Sbjct: 90786 ggaagaagcgaacaaacagcacc 90764
>emb|BX321886.14| Zebrafish DNA sequence from clone DKEYP-46C9 in linkage group 8, complete sequence Length = 168093 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 2 tttaaacaaaatatccgtctgtt 24 |||||||||||||| |||||||| Sbjct: 49394 tttaaacaaaatatgcgtctgtt 49416
>emb|AL590147.7| Zebrafish DNA sequence from clone RP71-21D15 in linkage group 24 Contains part of a novel gene similar to human, rat and mouse CTNND2 (catenin delta 2, cadherin-associated protein delta 2, neural plakophilin-related arm-repeat protein) and a CpG island, complete sequence Length = 148485 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 gtctgtttttgtattgaac 36 ||||||||||||||||||| Sbjct: 121313 gtctgtttttgtattgaac 121295
>gb|AC026353.12| Homo sapiens 3 RP11-298O21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 138312 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 tgcccccagctgtttgctt 118 ||||||||||||||||||| Sbjct: 131782 tgcccccagctgtttgctt 131764
>emb|BX005411.8| Zebrafish DNA sequence from clone DKEY-53I6 in linkage group 24, complete sequence Length = 119148 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 gtctgtttttgtattgaac 36 ||||||||||||||||||| Sbjct: 23916 gtctgtttttgtattgaac 23898
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 7.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 16 ccgtctgtttttgtattgaactgcatg 42 |||||| ||||| |||||||||||||| Sbjct: 22895576 ccgtctttttttttattgaactgcatg 22895602
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 ggaagaaccgaacaaacagcacc 87 ||||||| ||||||||||||||| Sbjct: 3167884 ggaagaagcgaacaaacagcacc 3167862
>gb|AC074019.7| Homo sapiens BAC clone RP11-271M11 from 2, complete sequence Length = 127559 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 ttttgtattgaactgcatg 42 ||||||||||||||||||| Sbjct: 116091 ttttgtattgaactgcatg 116109
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 7.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 16 ccgtctgtttttgtattgaactgcatg 42 |||||| ||||| |||||||||||||| Sbjct: 23205486 ccgtctttttttttattgaactgcatg 23205512
>emb|BX908759.27| Zebrafish DNA sequence from clone DKEY-27J5 in linkage group 1, complete sequence Length = 231898 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 75 aacaaacagcaccacggtg 93 ||||||||||||||||||| Sbjct: 52779 aacaaacagcaccacggtg 52761
>emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in linkage group 20, complete sequence Length = 208922 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 ctaattttcagatttgatt 64 ||||||||||||||||||| Sbjct: 54452 ctaattttcagatttgatt 54470
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 tccgtctgtttttgtattg 33 ||||||||||||||||||| Sbjct: 614727 tccgtctgtttttgtattg 614709 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,797,713 Number of Sequences: 3902068 Number of extensions: 1797713 Number of successful extensions: 125174 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124933 Number of HSP's gapped (non-prelim): 241 length of query: 151 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 130 effective length of database: 17,151,101,840 effective search space: 2229643239200 effective search space used: 2229643239200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)