ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl10g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL359694.17| Human DNA sequence from clone RP11-524C21 on ch... 40 1.8
2gb|AC159211.2| Mus musculus BAC clone RP23-33F21 from chromosome... 40 1.8
3emb|CT030164.9| Mouse DNA sequence from clone RP23-311P8 on chro... 40 1.8
4gb|AF026204.1| Caenorhabditis elegans cosmid C30E1, complete seq... 38 7.3
5gb|AC122403.3| Mus musculus BAC clone RP24-112A10 from chromosom... 38 7.3
6gb|AC110501.26| Mus musculus chromosome 9, clone RP24-448H20, co... 38 7.3
7ref|XM_455582.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F11022g ... 38 7.3
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.3
9gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.3
10emb|AL157903.16| Human DNA sequence from clone RP4-683H8 on chro... 38 7.3
11emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 38 7.3
12gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.3
13emb|BX321886.14| Zebrafish DNA sequence from clone DKEYP-46C9 in... 38 7.3
14emb|AL590147.7| Zebrafish DNA sequence from clone RP71-21D15 in ... 38 7.3
15gb|AC026353.12| Homo sapiens 3 RP11-298O21 (Roswell Park Cancer ... 38 7.3
16emb|BX005411.8| Zebrafish DNA sequence from clone DKEY-53I6 in l... 38 7.3
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
19gb|AC074019.7| Homo sapiens BAC clone RP11-271M11 from 2, comple... 38 7.3
20gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 7.3
21emb|BX908759.27| Zebrafish DNA sequence from clone DKEY-27J5 in ... 38 7.3
22emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in l... 38 7.3
23emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 38 7.3

>emb|AL359694.17| Human DNA sequence from clone RP11-524C21 on chromosome 6 Contains a
            pseudogene similar to mesenchymal stem cell protein
            DSC92, complete sequence
          Length = 95369

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 46   ctaattttcagatttgattg 65
            ||||||||||||||||||||
Sbjct: 9672 ctaattttcagatttgattg 9653



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>gb|AC159211.2| Mus musculus BAC clone RP23-33F21 from chromosome 12, complete sequence
          Length = 201550

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 113    ttgcttgtgtaatgacaggaaaacatag 140
              ||||||||| ||| ||||||||||||||
Sbjct: 201498 ttgcttgtgaaataacaggaaaacatag 201525



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>emb|CT030164.9| Mouse DNA sequence from clone RP23-311P8 on chromosome 12, complete
              sequence
          Length = 224188

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 113    ttgcttgtgtaatgacaggaaaacatag 140
              ||||||||| ||| ||||||||||||||
Sbjct: 161365 ttgcttgtgaaataacaggaaaacatag 161338



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>gb|AF026204.1| Caenorhabditis elegans cosmid C30E1, complete sequence
          Length = 21698

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 50    ttttcagatttgattggaa 68
             |||||||||||||||||||
Sbjct: 11408 ttttcagatttgattggaa 11426



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>gb|AC122403.3| Mus musculus BAC clone RP24-112A10 from chromosome 16, complete
             sequence
          Length = 169481

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 122   taatgacaggaaaacatag 140
             |||||||||||||||||||
Sbjct: 73731 taatgacaggaaaacatag 73713



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>gb|AC110501.26| Mus musculus chromosome 9, clone RP24-448H20, complete sequence
          Length = 154359

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    ttttcagatttgattggaa 68
             |||||||||||||||||||
Sbjct: 96005 ttttcagatttgattggaa 95987



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>ref|XM_455582.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F11022g predicted mRNA
          Length = 2667

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 1   ctttaaacaaaatatccgtctgt 23
           ||||||||||||||| |||||||
Sbjct: 464 ctttaaacaaaatatacgtctgt 486



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 65      ggaagaaccgaacaaacagcacc 87
               ||||||| |||||||||||||||
Sbjct: 3167773 ggaagaagcgaacaaacagcacc 3167751



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>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0068E24, complete sequence
          Length = 141492

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 16    ccgtctgtttttgtattgaactgcatg 42
             |||||| ||||| ||||||||||||||
Sbjct: 48083 ccgtctttttttttattgaactgcatg 48109



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>emb|AL157903.16| Human DNA sequence from clone RP4-683H8 on chromosome 1p22.3-31.2
             Contains part of the LPHN2 gene for latrophilin 2,
             complete sequence
          Length = 74630

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 122   taatgacaggaaaacatagggtacaga 148
             |||||||||||||||||| | ||||||
Sbjct: 61144 taatgacaggaaaacatatgttacaga 61170



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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 1       ctttaaacaaaatatccgtctgt 23
               ||||||||||||||| |||||||
Sbjct: 1018417 ctttaaacaaaatatacgtctgt 1018395



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>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05,
             complete sequence
          Length = 101799

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 65    ggaagaaccgaacaaacagcacc 87
             ||||||| |||||||||||||||
Sbjct: 90786 ggaagaagcgaacaaacagcacc 90764



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>emb|BX321886.14| Zebrafish DNA sequence from clone DKEYP-46C9 in linkage group 8,
             complete sequence
          Length = 168093

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 2     tttaaacaaaatatccgtctgtt 24
             |||||||||||||| ||||||||
Sbjct: 49394 tttaaacaaaatatgcgtctgtt 49416



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>emb|AL590147.7| Zebrafish DNA sequence from clone RP71-21D15 in linkage group 24 Contains
              part of a novel gene similar to human, rat and mouse CTNND2
              (catenin delta 2, cadherin-associated protein delta 2,
              neural plakophilin-related arm-repeat protein) and a CpG
              island, complete sequence
          Length = 148485

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     gtctgtttttgtattgaac 36
              |||||||||||||||||||
Sbjct: 121313 gtctgtttttgtattgaac 121295



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>gb|AC026353.12| Homo sapiens 3 RP11-298O21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 138312

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 100    tgcccccagctgtttgctt 118
              |||||||||||||||||||
Sbjct: 131782 tgcccccagctgtttgctt 131764



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>emb|BX005411.8| Zebrafish DNA sequence from clone DKEY-53I6 in linkage group 24,
             complete sequence
          Length = 119148

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    gtctgtttttgtattgaac 36
             |||||||||||||||||||
Sbjct: 23916 gtctgtttttgtattgaac 23898



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                           
Query: 16       ccgtctgtttttgtattgaactgcatg 42
                |||||| ||||| ||||||||||||||
Sbjct: 22895576 ccgtctttttttttattgaactgcatg 22895602



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 65      ggaagaaccgaacaaacagcacc 87
               ||||||| |||||||||||||||
Sbjct: 3167884 ggaagaagcgaacaaacagcacc 3167862



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>gb|AC074019.7| Homo sapiens BAC clone RP11-271M11 from 2, complete sequence
          Length = 127559

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 24     ttttgtattgaactgcatg 42
              |||||||||||||||||||
Sbjct: 116091 ttttgtattgaactgcatg 116109



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                           
Query: 16       ccgtctgtttttgtattgaactgcatg 42
                |||||| ||||| ||||||||||||||
Sbjct: 23205486 ccgtctttttttttattgaactgcatg 23205512



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>emb|BX908759.27| Zebrafish DNA sequence from clone DKEY-27J5 in linkage group 1,
             complete sequence
          Length = 231898

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 75    aacaaacagcaccacggtg 93
             |||||||||||||||||||
Sbjct: 52779 aacaaacagcaccacggtg 52761



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>emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in linkage group 20,
             complete sequence
          Length = 208922

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 46    ctaattttcagatttgatt 64
             |||||||||||||||||||
Sbjct: 54452 ctaattttcagatttgatt 54470



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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia
              lipolytica
          Length = 4224103

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     tccgtctgtttttgtattg 33
              |||||||||||||||||||
Sbjct: 614727 tccgtctgtttttgtattg 614709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,797,713
Number of Sequences: 3902068
Number of extensions: 1797713
Number of successful extensions: 125174
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124933
Number of HSP's gapped (non-prelim): 241
length of query: 151
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 130
effective length of database: 17,151,101,840
effective search space: 2229643239200
effective search space used: 2229643239200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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