ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl10f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF064560.1|AF064560 Hordeum vulgare cultivar Bomi starch bran... 127 3e-27
2gb|U66376.1|TAU66376 Triticum aestivum 1,4-alpha-D-glucan 6-alph... 88 3e-15
3emb|Y11282.1|TASBA2 T.aestivum mRNA for starch branching enzyme II 80 7e-13
4gb|AF338432.1|AF338432 Triticum aestivum starch branching enzyme... 80 7e-13
5gb|AF338431.1|AF338431 Aegilops tauschii starch branching enzyme... 80 7e-13
6gb|AF286319.1| Triticum aestivum starch branching enzyme 2 (Sbe2... 80 7e-13
7gb|AC099007.2| Drosophila melanogaster clone BACR16B07, complete... 42 0.15
8ref|NM_137701.2| Drosophila melanogaster CG4030-RA (CG4030), mRNA 42 0.15
9gb|AY061312.1| Drosophila melanogaster LD23155 full length cDNA 42 0.15
10gb|AE003453.3| Drosophila melanogaster chromosome 2R, section 61... 42 0.15
11gb|AC004313.1|AC004313 Drosophila melanogaster (P1 DS02368 (D205... 42 0.15
12gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome... 40 0.61
13gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome ... 40 0.61
14gb|AC124098.6| Mus musculus chromosome 3, clone RP23-452I19, com... 38 2.4
15gb|AC149303.10| Medicago truncatula clone mth2-76a20, complete s... 38 2.4
16emb|CR847786.13| Zebrafish DNA sequence from clone DKEYP-9B4 in ... 38 2.4
17emb|CR354535.11| Zebrafish DNA sequence from clone CH211-199M16 ... 38 2.4
18emb|BX294110.8| Zebrafish DNA sequence from clone DKEYP-19H3 in ... 38 2.4
19gb|AC093158.2| Homo sapiens chromosome 1 clone RP11-439H8, compl... 38 2.4
20gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosom... 38 2.4
21gb|AC110171.29| Mus musculus chromosome 12, clone RP23-400A5, co... 38 2.4
22emb|CT010467.6| Mouse DNA sequence from clone RP23-81C12 on chro... 38 2.4
23gb|AC165976.2| Gallus gallus BAC clone CH261-89G17 from chromoso... 38 2.4
24emb|AL935063.7| Zebrafish DNA sequence from clone CH211-165P5, c... 38 2.4
25emb|AL646048.22| Mouse DNA sequence from clone RP23-289C5 on chr... 38 2.4
26gb|AE014840.1| Plasmodium falciparum 3D7 chromosome 11 section 5... 36 9.5
27gb|AC147568.5| Mus musculus chromosome 7 clone RP23-15J23, compl... 36 9.5
28gb|AC009847.9| Drosophila melanogaster clone BACR03L10, complete... 36 9.5
29gb|AC165072.13| Mus musculus chromosome 18, clone RP23-345E17, c... 36 9.5
30gb|AC162610.2| Mus musculus chromosome 5, clone RP23-314N3, comp... 36 9.5
31gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome... 36 9.5
32gb|AC133498.2| Mus musculus BAC clone RP24-241K8 from chromosome... 36 9.5
33gb|AC004513.1|HUAC004513 Homo sapiens Chromosome 16 BAC clone CI... 36 9.5
34gb|AC121989.2| Mus musculus BAC clone RP24-298C8 from 7, complet... 36 9.5
35gb|AC103930.10| Mus musculus chromosome 5, clone RP23-238D18, co... 36 9.5
36gb|AC006972.2| Homo sapiens PAC clone RP4-799O8 from 7, complete... 36 9.5
37gb|AC134521.41| Medicago truncatula clone mth2-31k24, complete s... 36 9.5
38emb|AL592063.10| Human DNA sequence from clone RP11-575F9 on chr... 36 9.5
39gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare str... 36 9.5
40emb|AL691518.9| Mouse DNA sequence from clone RP23-267K1 on chro... 36 9.5
41gb|AC083943.8| Genomic sequence for Oryza sativa, Nipponbare str... 36 9.5
42gb|AC116099.2| Homo sapiens chromosome 1 clone RP11-338F23, comp... 36 9.5
43emb|BX005343.18| Zebrafish DNA sequence from clone DKEY-29F2 in ... 36 9.5
44emb|BX546499.15| Zebrafish DNA sequence from clone DKEY-27P18 in... 36 9.5
45gb|DQ378283.1| Drosophila virilis strain Tucson 15010-1001.10 ch... 36 9.5
46gb|AC008127.11| Homo sapiens 12 BAC RP11-478B9 (Roswell Park Can... 36 9.5
47dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 36 9.5
48emb|BX682233.6| Zebrafish DNA sequence from clone CH211-177P5 in... 36 9.5
49gb|AC110892.11| Mus musculus chromosome 3, clone RP24-490D9, com... 36 9.5
50gb|AC012346.9|AC012346 Homo sapiens chromosome , clone RP11-15N2... 36 9.5
51gb|AC025508.7|AC025508 Homo sapiens, clone RP11-659A24, complete... 36 9.5
52dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 36 9.5
53gb|AC154430.3| Mus musculus BAC clone RP24-208K8 from chromosome... 36 9.5
54gb|AC013408.7| Homo sapiens BAC clone RP11-469G18 from 2, comple... 36 9.5
55gb|AC040174.5| Homo sapiens chromosome 16 clone RP11-96H17, comp... 36 9.5
56gb|AC068904.44| Mus musculus strain C57BL/6J chromosome 9 clone ... 36 9.5
57emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, c... 36 9.5
58gb|AC006384.2|AC006384 Homo sapiens BAC clone RP11-557I6 from 7q... 36 9.5
59gb|AE003784.5| Drosophila melanogaster chromosome 2R, section 5 ... 36 9.5
60gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 36 9.5
61emb|AL935333.9| Zebrafish DNA sequence from clone CH211-198I18 i... 36 9.5
62emb|CR847947.14| Zebrafish DNA sequence from clone DKEY-56M16 in... 36 9.5
63gb|AC145954.3| Gallus gallus BAC clone CH261-13B2 from chromosom... 36 9.5
64gb|AC132618.3| Mus musculus BAC clone RP23-238K12 from 6, comple... 36 9.5
65gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone ... 36 9.5
66emb|AL772220.7| Mouse DNA sequence from clone RP23-409N18 on chr... 36 9.5 
>gb|AF064560.1|AF064560 Hordeum vulgare cultivar Bomi starch branching enzyme IIa (sbeIIa)
            mRNA, nuclear gene encoding plastid protein, complete cds
          Length = 2554

 Score =  127 bits (64), Expect = 3e-27
 Identities = 64/64 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgaagcgcacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2520 ttgaagcgcacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagat 2461

                
Query: 61   agga 64
            ||||
Sbjct: 2460 agga 2457
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>gb|U66376.1|TAU66376 Triticum aestivum 1,4-alpha-D-glucan
            6-alpha-D-(1,4-alpha-D-glucanotransferase mRNA, complete
            cds
          Length = 2853

 Score = 87.7 bits (44), Expect = 3e-15
 Identities = 60/64 (93%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgaagcgcacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagat 60
            |||||||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||
Sbjct: 2792 ttgaagcgcacgggcaattattagtt-atatgtacaaaaacaaccgggaatgtgcaagat 2734

                
Query: 61   agga 64
            ||||
Sbjct: 2733 agga 2730
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>emb|Y11282.1|TASBA2 T.aestivum mRNA for starch branching enzyme II
          Length = 2970

 Score = 79.8 bits (40), Expect = 7e-13
 Identities = 56/60 (93%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                        
Query: 5    agcgcacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagatagga 64
            |||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||
Sbjct: 2906 agcgcacgggcaattattagtt-atatgtacaaaaacaaccgggaatgtgcaagatagga 2848
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>gb|AF338432.1|AF338432 Triticum aestivum starch branching enzyme IIa variant mRNA, complete
            cds
          Length = 2726

 Score = 79.8 bits (40), Expect = 7e-13
 Identities = 56/60 (93%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                        
Query: 5    agcgcacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagatagga 64
            |||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||
Sbjct: 2714 agcgcacgggcaattattagtt-atatgtacaaaaacaaccgggaatgtgcaagatagga 2656
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>gb|AF338431.1|AF338431 Aegilops tauschii starch branching enzyme IIa gene, complete cds
          Length = 11475

 Score = 79.8 bits (40), Expect = 7e-13
 Identities = 56/60 (93%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                         
Query: 5     agcgcacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagatagga 64
             |||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||
Sbjct: 11461 agcgcacgggcaattattagtt-atatgtacaaaaacaaccgggaatgtgcaagatagga 11403
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>gb|AF286319.1| Triticum aestivum starch branching enzyme 2 (Sbe2) mRNA, complete cds
          Length = 2970

 Score = 79.8 bits (40), Expect = 7e-13
 Identities = 56/60 (93%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                        
Query: 5    agcgcacgggcaattattagtttatatgtacataaacaaccgggaatgtgagagatagga 64
            |||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||
Sbjct: 2904 agcgcacgggcaattattagtt-atatgtacaaaaacaaccgggaatgtgcaagatagga 2846
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>gb|AC099007.2| Drosophila melanogaster clone BACR16B07, complete sequence
          Length = 172393

 Score = 42.1 bits (21), Expect = 0.15
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    ttattagtttatatgtacata 38
             |||||||||||||||||||||
Sbjct: 86061 ttattagtttatatgtacata 86041
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>ref|NM_137701.2| Drosophila melanogaster CG4030-RA (CG4030), mRNA
          Length = 2320

 Score = 42.1 bits (21), Expect = 0.15
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 18 ttattagtttatatgtacata 38
          |||||||||||||||||||||
Sbjct: 52 ttattagtttatatgtacata 32
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>gb|AY061312.1| Drosophila melanogaster LD23155 full length cDNA
          Length = 2311

 Score = 42.1 bits (21), Expect = 0.15
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 18 ttattagtttatatgtacata 38
          |||||||||||||||||||||
Sbjct: 27 ttattagtttatatgtacata 7
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>gb|AE003453.3| Drosophila melanogaster chromosome 2R, section 61 of 73 of the
            complete sequence
          Length = 305143

 Score = 42.1 bits (21), Expect = 0.15
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 18   ttattagtttatatgtacata 38
            |||||||||||||||||||||
Sbjct: 2700 ttattagtttatatgtacata 2720
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>gb|AC004313.1|AC004313 Drosophila melanogaster (P1 DS02368 (D205)) DNA sequence, complete
             sequence
          Length = 80993

 Score = 42.1 bits (21), Expect = 0.15
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    ttattagtttatatgtacata 38
             |||||||||||||||||||||
Sbjct: 49971 ttattagtttatatgtacata 49951
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>gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome 7, complete
            sequence
          Length = 190553

 Score = 40.1 bits (20), Expect = 0.61
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 24   gtttatatgtacataaacaa 43
            ||||||||||||||||||||
Sbjct: 6326 gtttatatgtacataaacaa 6345
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>gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome 7, complete sequence
          Length = 265770

 Score = 40.1 bits (20), Expect = 0.61
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gtttatatgtacataaacaa 43
             ||||||||||||||||||||
Sbjct: 60879 gtttatatgtacataaacaa 60860
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>gb|AC124098.6| Mus musculus chromosome 3, clone RP23-452I19, complete sequence
          Length = 191853

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     tatatgtacataaacaacc 45
              |||||||||||||||||||
Sbjct: 100504 tatatgtacataaacaacc 100486
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>gb|AC149303.10| Medicago truncatula clone mth2-76a20, complete sequence
          Length = 141028

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    ttagtttatatgtacataa 39
             |||||||||||||||||||
Sbjct: 45914 ttagtttatatgtacataa 45932
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>emb|CR847786.13| Zebrafish DNA sequence from clone DKEYP-9B4 in linkage group 13, complete
              sequence
          Length = 156551

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 20     attagtttatatgtacataaaca 42
              |||||||||||| ||||||||||
Sbjct: 118174 attagtttatatatacataaaca 118196
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>emb|CR354535.11| Zebrafish DNA sequence from clone CH211-199M16 in linkage group 25,
              complete sequence
          Length = 225139

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     aattattagtttatatgta 34
              |||||||||||||||||||
Sbjct: 158994 aattattagtttatatgta 159012
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>emb|BX294110.8| Zebrafish DNA sequence from clone DKEYP-19H3 in linkage group 25,
             complete sequence
          Length = 176023

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    aattattagtttatatgta 34
             |||||||||||||||||||
Sbjct: 72217 aattattagtttatatgta 72199
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>gb|AC093158.2| Homo sapiens chromosome 1 clone RP11-439H8, complete sequence
          Length = 179582

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 16    aattattagtttatatgtacata 38
             |||||||||||||||| ||||||
Sbjct: 45134 aattattagtttatatttacata 45156
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>gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosome 17, complete
             sequence
          Length = 195483

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    tttatatgtacataaacaa 43
             |||||||||||||||||||
Sbjct: 75641 tttatatgtacataaacaa 75659
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>gb|AC110171.29| Mus musculus chromosome 12, clone RP23-400A5, complete sequence
          Length = 188590

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 25     tttatatgtacataaacaa 43
              |||||||||||||||||||
Sbjct: 181580 tttatatgtacataaacaa 181562
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>emb|CT010467.6| Mouse DNA sequence from clone RP23-81C12 on chromosome 17, complete
            sequence
          Length = 216559

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 25   tttatatgtacataaacaa 43
            |||||||||||||||||||
Sbjct: 1057 tttatatgtacataaacaa 1075
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>gb|AC165976.2| Gallus gallus BAC clone CH261-89G17 from chromosome ul, complete
             sequence
          Length = 176724

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    ttattagtttatatgtaca 36
             |||||||||||||||||||
Sbjct: 69725 ttattagtttatatgtaca 69707
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>emb|AL935063.7| Zebrafish DNA sequence from clone CH211-165P5, complete sequence
          Length = 141819

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 23    agtttatatgtacataaacaacc 45
             ||||||||| |||||||||||||
Sbjct: 89808 agtttatatttacataaacaacc 89830
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>emb|AL646048.22| Mouse DNA sequence from clone RP23-289C5 on chromosome X, complete
             sequence
          Length = 114787

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 18    ttattagtttatatgtacataaa 40
             |||| ||||||||||||||||||
Sbjct: 81918 ttatgagtttatatgtacataaa 81896
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>gb|AE014840.1| Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete
             sequence
          Length = 249995

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    attattagtttatatgta 34
             ||||||||||||||||||
Sbjct: 92721 attattagtttatatgta 92704
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>gb|AC147568.5| Mus musculus chromosome 7 clone RP23-15J23, complete sequence
          Length = 211115

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 20     attagtttatatgtacat 37
              ||||||||||||||||||
Sbjct: 153551 attagtttatatgtacat 153534
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>gb|AC009847.9| Drosophila melanogaster clone BACR03L10, complete sequence
          Length = 180498

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 21    ttagtttatatgtacata 38
             ||||||||||||||||||
Sbjct: 29610 ttagtttatatgtacata 29627
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>gb|AC165072.13| Mus musculus chromosome 18, clone RP23-345E17, complete sequence
          Length = 223019

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 25     tttatatgtacataaaca 42
              ||||||||||||||||||
Sbjct: 159252 tttatatgtacataaaca 159235
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>gb|AC162610.2| Mus musculus chromosome 5, clone RP23-314N3, complete sequence
          Length = 152040

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 16    aattattagtttatatgtacat 37
             ||||||||||||||| ||||||
Sbjct: 27967 aattattagtttataggtacat 27988
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>gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome 7, complete sequence
          Length = 260989

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 25     tttatatgtacataaaca 42
              ||||||||||||||||||
Sbjct: 155451 tttatatgtacataaaca 155434
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>gb|AC133498.2| Mus musculus BAC clone RP24-241K8 from chromosome 13, complete sequence
          Length = 159112

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 23    agtttatatgtacataaa 40
             ||||||||||||||||||
Sbjct: 52412 agtttatatgtacataaa 52395
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>gb|AC004513.1|HUAC004513 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-926E7, complete
             sequence
          Length = 101311

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 25    tttatatgtacataaaca 42
             ||||||||||||||||||
Sbjct: 36825 tttatatgtacataaaca 36842
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>gb|AC121989.2| Mus musculus BAC clone RP24-298C8 from 7, complete sequence
          Length = 175515

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 20    attagtttatatgtacat 37
             ||||||||||||||||||
Sbjct: 41527 attagtttatatgtacat 41510
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>gb|AC103930.10| Mus musculus chromosome 5, clone RP23-238D18, complete sequence
          Length = 203246

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 16     aattattagtttatatgtacat 37
              ||||||||||||||| ||||||
Sbjct: 189422 aattattagtttataggtacat 189401
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>gb|AC006972.2| Homo sapiens PAC clone RP4-799O8 from 7, complete sequence
          Length = 171537

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 14    gcaattattagtttatatgtac 35
             |||||||||| |||||||||||
Sbjct: 79960 gcaattattactttatatgtac 79981
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>gb|AC134521.41| Medicago truncatula clone mth2-31k24, complete sequence
          Length = 132267

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 22     tagtttatatgtacataa 39
              ||||||||||||||||||
Sbjct: 121327 tagtttatatgtacataa 121310
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>emb|AL592063.10| Human DNA sequence from clone RP11-575F9 on chromosome 1, complete
              sequence
          Length = 160396

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 16     aattattagtttatatgt 33
              ||||||||||||||||||
Sbjct: 107188 aattattagtttatatgt 107171
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>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0044A10, from chromosome 10, complete sequence
          Length = 173374

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 21    ttagtttatatgtacata 38
             ||||||||||||||||||
Sbjct: 48817 ttagtttatatgtacata 48800
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>emb|AL691518.9| Mouse DNA sequence from clone RP23-267K1 on chromosome 11 Contains a
             CpG island, complete sequence
          Length = 114102

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 17    attattagtttatatgtacata 38
             ||||||||||||||| ||||||
Sbjct: 68631 attattagtttatatttacata 68652
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>gb|AC083943.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0044A10, from chromosome 10, complete sequence
          Length = 169270

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 21     ttagtttatatgtacata 38
              ||||||||||||||||||
Sbjct: 158087 ttagtttatatgtacata 158070
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>gb|AC116099.2| Homo sapiens chromosome 1 clone RP11-338F23, complete sequence
          Length = 184007

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 14    gcaattattagtttatatgtac 35
             |||||||||| |||||||||||
Sbjct: 81226 gcaattattactttatatgtac 81247
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>emb|BX005343.18| Zebrafish DNA sequence from clone DKEY-29F2 in linkage group 11,
             complete sequence
          Length = 235698

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                       
Query: 14    gcaattattagtttatatgtacataa 39
             |||| ||||||||| |||||||||||
Sbjct: 39807 gcaaatattagtttttatgtacataa 39832
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>emb|BX546499.15| Zebrafish DNA sequence from clone DKEY-27P18 in linkage group 5, complete
              sequence
          Length = 194807

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 40     acaaccgggaatgtgaga 57
              ||||||||||||||||||
Sbjct: 187873 acaaccgggaatgtgaga 187856
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>gb|DQ378283.1| Drosophila virilis strain Tucson 15010-1001.10 chromosome 4 fosmids
             38M22 and 34I22, complete sequence
          Length = 56333

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 27    tatatgtacataaacaac 44
             ||||||||||||||||||
Sbjct: 27868 tatatgtacataaacaac 27851
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>gb|AC008127.11| Homo sapiens 12 BAC RP11-478B9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 140626

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    gggcaattattagtttat 29
             ||||||||||||||||||
Sbjct: 25854 gggcaattattagtttat 25871
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 45     cgggaatgtgagagatag 62
              ||||||||||||||||||
Sbjct: 198061 cgggaatgtgagagatag 198078
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>emb|BX682233.6| Zebrafish DNA sequence from clone CH211-177P5 in linkage group 16,
              complete sequence
          Length = 145536

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 25     tttatatgtacataaaca 42
              ||||||||||||||||||
Sbjct: 139772 tttatatgtacataaaca 139755
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>gb|AC110892.11| Mus musculus chromosome 3, clone RP24-490D9, complete sequence
          Length = 150740

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 25    tttatatgtacataaaca 42
             ||||||||||||||||||
Sbjct: 91362 tttatatgtacataaaca 91379
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>gb|AC012346.9|AC012346 Homo sapiens chromosome , clone RP11-15N22, complete sequence
          Length = 164470

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 23     agtttatatgtacataaa 40
              ||||||||||||||||||
Sbjct: 160357 agtttatatgtacataaa 160374
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>gb|AC025508.7|AC025508 Homo sapiens, clone RP11-659A24, complete sequence
          Length = 193598

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 23    agtttatatgtacataaa 40
             ||||||||||||||||||
Sbjct: 36533 agtttatatgtacataaa 36550
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 21       ttagtttatatgtacata 38
                ||||||||||||||||||
Sbjct: 13202568 ttagtttatatgtacata 13202551
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>gb|AC154430.3| Mus musculus BAC clone RP24-208K8 from chromosome 16, complete sequence
          Length = 178222

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 21    ttagtttatatgtacata 38
             ||||||||||||||||||
Sbjct: 62938 ttagtttatatgtacata 62921
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>gb|AC013408.7| Homo sapiens BAC clone RP11-469G18 from 2, complete sequence
          Length = 151841

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 25     tttatatgtacataaaca 42
              ||||||||||||||||||
Sbjct: 137168 tttatatgtacataaaca 137185
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>gb|AC040174.5| Homo sapiens chromosome 16 clone RP11-96H17, complete sequence
          Length = 175802

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 25    tttatatgtacataaaca 42
             ||||||||||||||||||
Sbjct: 60583 tttatatgtacataaaca 60566
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>gb|AC068904.44| Mus musculus strain C57BL/6J chromosome 9 clone rp23-221i11, complete
             sequence
          Length = 186063

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 26    ttatatgtacataaacaa 43
             ||||||||||||||||||
Sbjct: 18495 ttatatgtacataaacaa 18512
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>emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, complete sequence
          Length = 243870

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 25     tttatatgtacataaaca 42
              ||||||||||||||||||
Sbjct: 116244 tttatatgtacataaaca 116227
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>gb|AC006384.2|AC006384 Homo sapiens BAC clone RP11-557I6 from 7q11.23-q21.1, complete sequence
          Length = 128959

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 14    gcaattattagtttatatgtac 35
             |||||||||| |||||||||||
Sbjct: 53904 gcaattattactttatatgtac 53883
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>gb|AE003784.5| Drosophila melanogaster chromosome 2R, section 5 of 73 of the
            complete sequence
          Length = 305162

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 21   ttagtttatatgtacata 38
            ||||||||||||||||||
Sbjct: 2280 ttagtttatatgtacata 2263
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 21       ttagtttatatgtacata 38
                ||||||||||||||||||
Sbjct: 13209908 ttagtttatatgtacata 13209891
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>emb|AL935333.9| Zebrafish DNA sequence from clone CH211-198I18 in linkage group 5,
             complete sequence
          Length = 199019

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 16    aattattagtttatatgt 33
             ||||||||||||||||||
Sbjct: 31861 aattattagtttatatgt 31878
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>emb|CR847947.14| Zebrafish DNA sequence from clone DKEY-56M16 in linkage group 7,
             complete sequence
          Length = 205682

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 46    gggaatgtgagagatagg 63
             ||||||||||||||||||
Sbjct: 54785 gggaatgtgagagatagg 54768
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>gb|AC145954.3| Gallus gallus BAC clone CH261-13B2 from chromosome unknown, complete
              sequence
          Length = 192205

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 19     tattagtttatatgtaca 36
              ||||||||||||||||||
Sbjct: 148149 tattagtttatatgtaca 148166
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>gb|AC132618.3| Mus musculus BAC clone RP23-238K12 from 6, complete sequence
          Length = 155828

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 15    caattattagtttatatg 32
             ||||||||||||||||||
Sbjct: 46050 caattattagtttatatg 46033
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>gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone rp23-222i2, complete
             sequence
          Length = 185413

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 26    ttatatgtacataaacaa 43
             ||||||||||||||||||
Sbjct: 15679 ttatatgtacataaacaa 15662
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>emb|AL772220.7| Mouse DNA sequence from clone RP23-409N18 on chromosome 4, complete
              sequence
          Length = 176159

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 17     attattagtttatatgtacata 38
              |||||||||||| |||||||||
Sbjct: 150516 attattagtttacatgtacata 150495


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 584,508
Number of Sequences: 3902068
Number of extensions: 584508
Number of successful extensions: 45162
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45012
Number of HSP's gapped (non-prelim): 145
length of query: 64
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 43
effective length of database: 17,151,101,840
effective search space: 737497379120
effective search space used: 737497379120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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