ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl10f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|BX324194.7| Zebrafish DNA sequence from clone CH211-147A23 i... 44 0.33
2emb|BX571951.7| Zebrafish DNA sequence from clone DKEY-5A9 in li... 44 0.33
3emb|CR457449.7| Zebrafish DNA sequence from clone DKEY-104I15 in... 42 1.3
4emb|BX530081.6| Zebrafish DNA sequence from clone CH211-121B13 i... 42 1.3
5gb|AC010408.6| Homo sapiens chromosome 5 clone CTD-2156G10, comp... 42 1.3
6gb|AC034222.5| Homo sapiens chromosome 5 clone CTD-2062O1, compl... 42 1.3
7dbj|AK157484.1| Mus musculus activated spleen cDNA, RIKEN full-l... 42 1.3
8emb|BX510648.5| Zebrafish DNA sequence from clone CH211-155O9 in... 42 1.3
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
10emb|AL603782.5| Mouse DNA sequence from clone RP23-480M4 on chro... 42 1.3
11emb|AL606599.3|OSJN00034 Oryza sativa genomic DNA, chromosome 4,... 42 1.3
12gb|AY041179.1| Cantharellus subalbidus OSC 75937 18S ribosomal R... 40 5.2
13gb|AY041178.1| Cantharellus subalbidus OSC 76034 18S ribosomal R... 40 5.2
14emb|F38006.1|MMTBL1 Mus musculus partial Tbl1 gene 40 5.2
15gb|AC019208.8| Homo sapiens BAC clone RP11-439J5 from 2, complet... 40 5.2
16dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 5.2
17gb|AF044692.1|CASITS1 Cantharellus subalbidus internal transcrib... 40 5.2
18emb|AL714017.11| Mouse DNA sequence from clone RP23-91C19 on chr... 40 5.2
19emb|AL606918.9| Mouse DNA sequence from clone RP23-327O13 on chr... 40 5.2
20emb|AL627393.13| Mouse DNA sequence from clone RP23-154M2 on chr... 40 5.2 
>emb|BX324194.7| Zebrafish DNA sequence from clone CH211-147A23 in linkage group 5,
             complete sequence
          Length = 187691

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 121   tcatcactctgatacaagttga 142
             ||||||||||||||||||||||
Sbjct: 89253 tcatcactctgatacaagttga 89274
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>emb|BX571951.7| Zebrafish DNA sequence from clone DKEY-5A9 in linkage group 18, complete
              sequence
          Length = 157583

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 121    tcatcactctgatacaagttga 142
              ||||||||||||||||||||||
Sbjct: 104784 tcatcactctgatacaagttga 104763
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>emb|CR457449.7| Zebrafish DNA sequence from clone DKEY-104I15 in linkage group 14,
            complete sequence
          Length = 187354

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 122  catcactctgatacaagttga 142
            |||||||||||||||||||||
Sbjct: 4632 catcactctgatacaagttga 4612
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>emb|BX530081.6| Zebrafish DNA sequence from clone CH211-121B13 in linkage group 14,
             complete sequence
          Length = 162058

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   catcactctgatacaagttga 142
             |||||||||||||||||||||
Sbjct: 36456 catcactctgatacaagttga 36436
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>gb|AC010408.6| Homo sapiens chromosome 5 clone CTD-2156G10, complete sequence
          Length = 71806

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 220   acagataagttagatcagggg 240
             |||||||||||||||||||||
Sbjct: 36409 acagataagttagatcagggg 36429
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>gb|AC034222.5| Homo sapiens chromosome 5 clone CTD-2062O1, complete sequence
          Length = 140927

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 220    acagataagttagatcagggg 240
              |||||||||||||||||||||
Sbjct: 136170 acagataagttagatcagggg 136150
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>dbj|AK157484.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830218L05 product:unclassifiable, full
            insert sequence
          Length = 2197

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 266  ttcacaaccaaatcttcagta 286
            |||||||||||||||||||||
Sbjct: 1894 ttcacaaccaaatcttcagta 1914
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>emb|BX510648.5| Zebrafish DNA sequence from clone CH211-155O9 in linkage group 5,
              complete sequence
          Length = 191453

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 122    catcactctgatacaagttga 142
              |||||||||||||||||||||
Sbjct: 143688 catcactctgatacaagttga 143668
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 270      caaccaaatcttcagtagtgagcat 294
                |||||||||||||||| ||||||||
Sbjct: 15244310 caaccaaatcttcagtcgtgagcat 15244334



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 270      caaccaaatcttcagtagtgagcat 294
                |||||||||||||||| ||||||||
Sbjct: 14628357 caaccaaatcttcagtcgtgagcat 14628381
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>emb|AL603782.5| Mouse DNA sequence from clone RP23-480M4 on chromosome 8, complete
             sequence
          Length = 175157

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 266   ttcacaaccaaatcttcagta 286
             |||||||||||||||||||||
Sbjct: 35300 ttcacaaccaaatcttcagta 35280
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>emb|AL606599.3|OSJN00034 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0050F15,
             complete sequence
          Length = 150562

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 270   caaccaaatcttcagtagtgagcat 294
             |||||||||||||||| ||||||||
Sbjct: 96494 caaccaaatcttcagtcgtgagcat 96518
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>gb|AY041179.1| Cantharellus subalbidus OSC 75937 18S ribosomal RNA gene, partial
           sequence; and internal transcribed spacer 1, complete
           sequence
          Length = 925

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ggttgggttggaaaaaccat 262
           ||||||||||||||||||||
Sbjct: 80  ggttgggttggaaaaaccat 61
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>gb|AY041178.1| Cantharellus subalbidus OSC 76034 18S ribosomal RNA gene, partial
           sequence; and internal transcribed spacer 1, complete
           sequence
          Length = 925

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ggttgggttggaaaaaccat 262
           ||||||||||||||||||||
Sbjct: 80  ggttgggttggaaaaaccat 61
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>emb|F38006.1|MMTBL1 Mus musculus partial Tbl1 gene
          Length = 17934

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 203  acagcacaagaacccacaca 222
            ||||||||||||||||||||
Sbjct: 4433 acagcacaagaacccacaca 4414
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>gb|AC019208.8| Homo sapiens BAC clone RP11-439J5 from 2, complete sequence
          Length = 188164

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    attgtaagtgacacgaggcc 91
             ||||||||||||||||||||
Sbjct: 74596 attgtaagtgacacgaggcc 74577
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 341     tctcgtcgagcctgccaagg 360
               ||||||||||||||||||||
Sbjct: 1474899 tctcgtcgagcctgccaagg 1474880
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>gb|AF044692.1|CASITS1 Cantharellus subalbidus internal transcribed spacer 1, partial
           sequence
          Length = 636

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 ggttgggttggaaaaaccat 262
           ||||||||||||||||||||
Sbjct: 52  ggttgggttggaaaaaccat 33
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>emb|AL714017.11| Mouse DNA sequence from clone RP23-91C19 on chromosome X, complete
             sequence
          Length = 240597

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   acagcacaagaacccacaca 222
             ||||||||||||||||||||
Sbjct: 14322 acagcacaagaacccacaca 14303
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>emb|AL606918.9| Mouse DNA sequence from clone RP23-327O13 on chromosome 4, complete
              sequence
          Length = 192787

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    aaacaatcatcactctgata 134
              ||||||||||||||||||||
Sbjct: 105367 aaacaatcatcactctgata 105386
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>emb|AL627393.13| Mouse DNA sequence from clone RP23-154M2 on chromosome 4, complete
             sequence
          Length = 78456

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 205   agcacaagaacccacacagataag 228
             |||||||||||||||| |||||||
Sbjct: 10190 agcacaagaacccacatagataag 10167


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,550,933
Number of Sequences: 3902068
Number of extensions: 3550933
Number of successful extensions: 58233
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58154
Number of HSP's gapped (non-prelim): 79
length of query: 389
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 367
effective length of database: 17,147,199,772
effective search space: 6293022316324
effective search space used: 6293022316324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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