ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl10c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1901_STRPN (Q97NV8) Hypothetical RNA methyltransferase SP1901 (... 28 4.9
2Y1717_STRR6 (Q8DNH6) Hypothetical RNA methyltransferase spr1717 ... 28 4.9

>Y1901_STRPN (Q97NV8) Hypothetical RNA methyltransferase SP1901 (EC 2.1.1.-)|
          Length = 451

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 56  YTKLSGCHV*QCTADKQRQFTTKILHQHR*SYTLIKVENKE 178
           Y +  GC +     DKQ +F T +LHQ    +     EN E
Sbjct: 76  YNECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYE 116



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>Y1717_STRR6 (Q8DNH6) Hypothetical RNA methyltransferase spr1717 (EC 2.1.1.-)|
          Length = 451

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 56  YTKLSGCHV*QCTADKQRQFTTKILHQHR*SYTLIKVENKE 178
           Y +  GC +     DKQ +F T +LHQ    +     EN E
Sbjct: 76  YNECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYE 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,508,988
Number of Sequences: 219361
Number of extensions: 454869
Number of successful extensions: 732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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