>SECE_BUCAI (P57152) Preprotein translocase secE subunit|
          Length = 127

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 104 YHYRQNKQKVP*SPSWLSFSITPFFLIGDYL 196
           +HY +NK K+P    W+S SI  FF++  ++
Sbjct: 4   HHYNRNKHKIPEKVKWISISI--FFILSFFI 32

>SATT_HUMAN (P43007) Neutral amino acid transporter A (SATT)|
           (Alanine/serine/cysteine/ threonine transporter) (ASCT1)
          Length = 532

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = -1

Query: 284 RRRSNSKQLCKTAIFSLSVFPIHAATGL-----------LQDSHL*EKRELWRRITKMVI 138
           R R  +  L + A+  L+V  + A  GL            Q ++L    E+  R+ +M+I
Sbjct: 31  RARRCAGFLRRQALVLLTVSGVLAGAGLGAALRGLSLSRTQVTYLAFPGEMLLRMLRMII 90

Query: 137 MELSVCFACSDSLVLCFFCLMRIGG 63
           + L VC   S +  L   CL R+GG
Sbjct: 91  LPLVVCSLVSGAASLDASCLGRLGG 115

>CLAT_RAT (P32738) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 639

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 275 SNSKQLCKTAIFSLSVFPIHAATGLLQDSHL*EKRELWRRITK 147
           S   QL +TA+ +   + + A TG+  D+HL   REL R + K
Sbjct: 485 SEKLQLLQTAMQAHKQYTVMAITGMAIDNHLLALRELARDLCK 527

>INLA_LISMF (Q723K6) Internalin A precursor|
          Length = 800

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 42  PYRTWNSPSNSH*TEKTQNQTITTGKTNRKF 134
           P  TWN PS ++    T NQ++T GK    F
Sbjct: 456 PDITWNLPSYTNEVSYTFNQSVTIGKGTTTF 486

>CLAT_MOUSE (Q03059) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 640

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 275 SNSKQLCKTAIFSLSVFPIHAATGLLQDSHL*EKRELWRRITK 147
           S   QL + AI + + + + A TG+  D+HL   REL R + K
Sbjct: 486 SEKLQLLQRAIQAQTEYTVMAITGMAIDNHLLALRELARDLCK 528


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,514,519
Number of Sequences: 219361
Number of extensions: 819581
Number of successful extensions: 1833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1833
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)