Clone Name | rbastl09h11 |
---|---|
Clone Library Name | barley_pub |
>gb|BT016548.1| Zea mays clone Contig381 mRNA sequence Length = 1088 Score = 50.1 bits (25), Expect = 0.004 Identities = 58/69 (84%) Strand = Plus / Minus Query: 195 actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 254 ||||||||| ||| |||||||| | |||||||||| || | | |||| |||||||||| Sbjct: 732 actgctgcttctcactaacacatacatgtacagttaaatcgctacagttaacccacttat 673 Query: 255 tcagaagaa 263 ||||||||| Sbjct: 672 tcagaagaa 664
>emb|X98923.1|ZMRB1 Z.mays mRNA for Rb1 protein Length = 3747 Score = 50.1 bits (25), Expect = 0.004 Identities = 58/69 (84%) Strand = Plus / Minus Query: 195 actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 254 ||||||||| ||| |||||||| | |||||||||| || | || |||| | |||||||| Sbjct: 2213 actgctgcttctcactaacacatacatgtacagttaaatcgctccagttaatccacttat 2154 Query: 255 tcagaagaa 263 ||||||||| Sbjct: 2153 tcagaagaa 2145
>gb|AF250050.1| Zea mays retinoblastoma related protein RBR1 (rbr1) mRNA, complete cds Length = 2952 Score = 50.1 bits (25), Expect = 0.004 Identities = 58/69 (84%) Strand = Plus / Minus Query: 195 actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 254 ||||||||| ||| |||||||| | |||||||||| || | | |||| |||||||||| Sbjct: 2851 actgctgcttctcactaacacatacatgtacagttaaatcgctacagttaacccacttat 2792 Query: 255 tcagaagaa 263 ||||||||| Sbjct: 2791 tcagaagaa 2783
>gb|AY109777.1| Zea mays CL1187_-3 mRNA sequence Length = 2920 Score = 50.1 bits (25), Expect = 0.004 Identities = 58/69 (84%) Strand = Plus / Minus Query: 195 actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 254 ||||||| | ||| |||||||| | |||||||||| || || || ||| |||||||||| Sbjct: 1389 actgctggttctcactaacacatacatgtacagttaaatcactccagtcaacccacttat 1330 Query: 255 tcagaagaa 263 ||||||||| Sbjct: 1329 tcagaagaa 1321
>gb|AF007794.1|AF007794 Zea mays retinoblastoma-related protein 2a (RRB2a) mRNA, partial cds Length = 2945 Score = 50.1 bits (25), Expect = 0.004 Identities = 58/69 (84%) Strand = Plus / Minus Query: 195 actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 254 ||||||| | ||| |||||||| | |||||||||| || || || ||| |||||||||| Sbjct: 1389 actgctggttctcactaacacatacatgtacagttaaatcactccagtcaacccacttat 1330 Query: 255 tcagaagaa 263 ||||||||| Sbjct: 1329 tcagaagaa 1321
>gb|AF007793.1|AF007793 Zea mays retinoblastoma-related protein 1 (RRB1) mRNA, complete cds Length = 4367 Score = 50.1 bits (25), Expect = 0.004 Identities = 58/69 (84%) Strand = Plus / Minus Query: 195 actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 254 ||||||||| ||| |||||||| | |||||||||| || | || |||| | |||||||| Sbjct: 2831 actgctgcttctcactaacacatacatgtacagttaaatcgctccagttaatccacttat 2772 Query: 255 tcagaagaa 263 ||||||||| Sbjct: 2771 tcagaagaa 2763
>gb|AY109345.1| Zea mays CL1187_1 mRNA sequence Length = 4369 Score = 48.1 bits (24), Expect = 0.015 Identities = 57/68 (83%) Strand = Plus / Minus Query: 196 ctgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttatt 255 |||||||| ||| |||||||| | |||||||||| || | || |||| | ||||||||| Sbjct: 2850 ctgctgcttctcactaacacatacatgtacagttaaatcgctccagttaatccacttatt 2791 Query: 256 cagaagaa 263 |||||||| Sbjct: 2790 cagaagaa 2783
>gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0080I08, complete sequence Length = 197156 Score = 46.1 bits (23), Expect = 0.059 Identities = 23/23 (100%) Strand = Plus / Minus Query: 242 ttcacccacttattcagaagaac 264 ||||||||||||||||||||||| Sbjct: 38350 ttcacccacttattcagaagaac 38328
>gb|AC097062.2| Homo sapiens chromosome 1 clone RP11-428D12, complete sequence Length = 185700 Score = 46.1 bits (23), Expect = 0.059 Identities = 26/27 (96%) Strand = Plus / Minus Query: 127 tttttcaacagctggaaaataaaataa 153 |||| |||||||||||||||||||||| Sbjct: 120215 ttttacaacagctggaaaataaaataa 120189
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.059 Identities = 23/23 (100%) Strand = Plus / Minus Query: 242 ttcacccacttattcagaagaac 264 ||||||||||||||||||||||| Sbjct: 18773083 ttcacccacttattcagaagaac 18773061
>dbj|AK121431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138G19, full insert sequence Length = 3384 Score = 46.1 bits (23), Expect = 0.059 Identities = 23/23 (100%) Strand = Plus / Minus Query: 242 ttcacccacttattcagaagaac 264 ||||||||||||||||||||||| Sbjct: 3192 ttcacccacttattcagaagaac 3170
>dbj|AK064987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D03, full insert sequence Length = 3332 Score = 46.1 bits (23), Expect = 0.059 Identities = 23/23 (100%) Strand = Plus / Minus Query: 242 ttcacccacttattcagaagaac 264 ||||||||||||||||||||||| Sbjct: 3151 ttcacccacttattcagaagaac 3129
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.059 Identities = 23/23 (100%) Strand = Plus / Minus Query: 242 ttcacccacttattcagaagaac 264 ||||||||||||||||||||||| Sbjct: 18933156 ttcacccacttattcagaagaac 18933134
>emb|BX001025.23| Zebrafish DNA sequence from clone CH211-240D20, complete sequence Length = 179475 Score = 44.1 bits (22), Expect = 0.23 Identities = 28/30 (93%) Strand = Plus / Plus Query: 51 tctacagtaaacaccaacagattattacac 80 |||||||| || |||||||||||||||||| Sbjct: 165104 tctacagttaaaaccaacagattattacac 165133
>emb|BX004878.8| Zebrafish DNA sequence from clone DKEY-11H2 in linkage group 6, complete sequence Length = 254657 Score = 44.1 bits (22), Expect = 0.23 Identities = 28/30 (93%) Strand = Plus / Minus Query: 51 tctacagtaaacaccaacagattattacac 80 |||||||| || |||||||||||||||||| Sbjct: 31160 tctacagttaaaaccaacagattattacac 31131
>emb|BX004773.11| Zebrafish DNA sequence from clone DKEY-13D19, complete sequence Length = 245924 Score = 44.1 bits (22), Expect = 0.23 Identities = 28/30 (93%) Strand = Plus / Minus Query: 51 tctacagtaaacaccaacagattattacac 80 |||||||| || |||||||||||||||||| Sbjct: 209215 tctacagttaaaaccaacagattattacac 209186
>ref|XM_459509.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E05082g) partial mRNA Length = 1782 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 caacagattattacacactga 85 ||||||||||||||||||||| Sbjct: 990 caacagattattacacactga 970
>gb|AC131738.3| Mus musculus BAC clone RP23-94E15 from 16, complete sequence Length = 199386 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 attattacacactgaaaaata 91 ||||||||||||||||||||| Sbjct: 132955 attattacacactgaaaaata 132935
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 caacagattattacacactga 85 ||||||||||||||||||||| Sbjct: 368393 caacagattattacacactga 368413
>gb|AC023892.35|AC023892 Homo sapiens 12 BAC RP11-937H2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186000 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 tttttcaacagctggaaaataaaat 151 |||| |||||||||||||||||||| Sbjct: 164082 ttttacaacagctggaaaataaaat 164058
>gb|AC151338.2| Xenopus tropicalis clone ISB-347F7, complete sequence Length = 73907 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 agctggaaaataaaataatac 156 ||||||||||||||||||||| Sbjct: 48347 agctggaaaataaaataatac 48327
>gb|AC087565.5| Homo sapiens chromosome 16 clone RP11-53L24, complete sequence Length = 192937 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 138 ctggaaaataaaataatacat 158 ||||||||||||||||||||| Sbjct: 53536 ctggaaaataaaataatacat 53516
>gb|AC129200.4| Mus musculus BAC clone RP24-221J22 from chromosome 2, complete sequence Length = 168365 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 ccctcccacatagaagcattccat 32 |||||||||||||||| ||||||| Sbjct: 49011 ccctcccacatagaagtattccat 48988
>gb|AC011248.8| Homo sapiens 12 BAC RP11-14P21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111312 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 attattttccacagcttaca 120 |||||||||||||||||||| Sbjct: 67574 attattttccacagcttaca 67555
>ref|XM_647750.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (103.t00024) partial mRNA Length = 1524 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 tggaaaataaaataatacat 158 |||||||||||||||||||| Sbjct: 57 tggaaaataaaataatacat 38
>gb|AC111144.8| Mus musculus chromosome 6, clone RP23-373C23, complete sequence Length = 198667 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tcaacagctggaaaataaaa 150 |||||||||||||||||||| Sbjct: 72506 tcaacagctggaaaataaaa 72487
>emb|X63603.1|NTACTI N.tabacum gene for actin Length = 5496 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 atattgccggttattatttt 108 |||||||||||||||||||| Sbjct: 2122 atattgccggttattatttt 2103
>gb|AC160537.6| Mus musculus chromosome 8, clone RP24-95H19, complete sequence Length = 188409 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 aaaataaaataatacatcag 161 |||||||||||||||||||| Sbjct: 55561 aaaataaaataatacatcag 55580
>gb|AC020708.6| Homo sapiens BAC clone RP11-425B17 from 4, complete sequence Length = 208360 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 acttattcagaagaacagaa 268 |||||||||||||||||||| Sbjct: 72559 acttattcagaagaacagaa 72578
>gb|U52099.2|ZMU52099 Zea mays retinoblastoma-like protein (ZmRB) mRNA, partial cds Length = 1841 Score = 40.1 bits (20), Expect = 3.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 195 actgctgctactccctaacacacagatgtacagttgaagcattcgagttcacccacttat 254 ||||||||| ||| |||||||| | |||||||||| || | || |||| | |||||||| Sbjct: 1718 actgctgcttctcactaacacatacatgtacagttaaatcgctctagttaatccacttat 1659 Query: 255 tcag 258 |||| Sbjct: 1658 tcag 1655
>gb|AC102680.10| Mus musculus chromosome 8, clone RP24-88L18, complete sequence Length = 201260 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 aaaataaaataatacatcag 161 |||||||||||||||||||| Sbjct: 154580 aaaataaaataatacatcag 154599
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 ctacagtaaacaccaacaga 71 |||||||||||||||||||| Sbjct: 3933722 ctacagtaaacaccaacaga 3933703
>gb|AC007755.6|AC007755 Drosophila melanogaster, chromosome 3R, region 89A-89B, BAC clone BACR04C07, complete sequence Length = 173660 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 aaaataaaataatacatcag 161 |||||||||||||||||||| Sbjct: 111395 aaaataaaataatacatcag 111376
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 ctacagtaaacaccaacaga 71 |||||||||||||||||||| Sbjct: 55626 ctacagtaaacaccaacaga 55607
>emb|BX005094.3| Zebrafish DNA sequence from clone CH211-180H17 in linkage group 3, complete sequence Length = 155431 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 acacagatgtacagttgaag 233 |||||||||||||||||||| Sbjct: 63768 acacagatgtacagttgaag 63787
>emb|BX572629.8| Zebrafish DNA sequence from clone CH211-195L15 in linkage group 19, complete sequence Length = 170971 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 attattacacactgaaaaat 90 |||||||||||||||||||| Sbjct: 22266 attattacacactgaaaaat 22247
>emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in linkage group 22, complete sequence Length = 164475 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cagcttacactactgttttt 131 |||||||||||||||||||| Sbjct: 115433 cagcttacactactgttttt 115414
>emb|BX005064.4| Zebrafish DNA sequence from clone CH211-134N17 in linkage group 19, complete sequence Length = 134157 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 attattacacactgaaaaat 90 |||||||||||||||||||| Sbjct: 133895 attattacacactgaaaaat 133914
>gb|AE003711.3| Drosophila melanogaster chromosome 3R, section 49 of 118 of the complete sequence Length = 236475 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 aaaataaaataatacatcag 161 |||||||||||||||||||| Sbjct: 61812 aaaataaaataatacatcag 61831
>emb|AL929196.5| Mouse DNA sequence from clone RP23-7D13 on chromosome 2, complete sequence Length = 51115 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 ccctcccacatagaagcattccat 32 |||||||||||||||| ||||||| Sbjct: 8554 ccctcccacatagaagtattccat 8577 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,112,106 Number of Sequences: 3902068 Number of extensions: 4112106 Number of successful extensions: 91849 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91698 Number of HSP's gapped (non-prelim): 151 length of query: 280 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 258 effective length of database: 17,147,199,772 effective search space: 4423977541176 effective search space used: 4423977541176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)