ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF290446.1|AF290446 Lolium perenne clone LpASN-2 unknown sequ... 111 1e-21
2emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 111 1e-21
3gb|AF308474.1|AF308474 Hordeum vulgare asparaginase gene, comple... 109 4e-21
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 103 2e-19
5dbj|AK121820.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 2e-19
6dbj|AK068693.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 2e-19
7dbj|AK058733.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 2e-19
8emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4,... 103 2e-19
9ref|XM_474137.1| Oryza sativa (japonica cultivar-group), predic... 101 1e-18
10gb|AY110762.1| Zea mays CL2945_1 mRNA sequence 101 1e-18
11gb|DQ300284.2| Phaseolus vulgaris L-asparaginase 2 mRNA, complet... 60 3e-06
12dbj|AP006428.1| Lotus japonicus genomic DNA, chromosome 5, clone... 54 2e-04
13gb|AY096000.1| Glycine max L-asparaginase mRNA, complete cds 48 0.013
14ref|NM_112485.2| Arabidopsis thaliana asparaginase AT3G16150 mRN... 44 0.20
15emb|BX822707.1|CNS0A607 Arabidopsis thaliana Full-length cDNA Co... 44 0.20
16emb|BX822223.1|CNS0A5VW Arabidopsis thaliana Full-length cDNA Co... 44 0.20
17gb|AY086130.1| Arabidopsis thaliana clone 21689 mRNA, complete s... 44 0.20
18dbj|AK118259.1| Arabidopsis thaliana At3g16150 mRNA for putative... 44 0.20
19dbj|AB012247.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 44 0.20
20gb|BT024724.1| Arabidopsis thaliana At3g16150 mRNA, complete cds 42 0.79
21dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 3.1
22gb|AC103664.12| Mus musculus chromosome 7, clone RP23-348F4, com... 40 3.1
23dbj|AB089506.1| Glycine max GM-ASNASE1 mRNA for L-asparaginase, ... 40 3.1 
>gb|AF290446.1|AF290446 Lolium perenne clone LpASN-2 unknown sequence
          Length = 2449

 Score =  111 bits (56), Expect = 1e-21
 Identities = 65/68 (95%)
 Strand = Plus / Minus

                                                                        
Query: 175  ctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacatgc 234
            |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 2442 ctcactcccagatgccgacctccatgaagccgtcctcggtggcgcaccccctgaacatgc 2383

                    
Query: 235  cggtgcag 242
            | ||||||
Sbjct: 2382 cagtgcag 2375
to top
>emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete
             sequence
          Length = 118971

 Score =  111 bits (56), Expect = 1e-21
 Identities = 65/68 (95%)
 Strand = Plus / Minus

                                                                         
Query: 175   ctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacatgc 234
             |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 88826 ctcactcccagatgccgacctccatgaatccgtcctcggtggcgcaccccctgaacatgc 88767

                     
Query: 235   cggtgcag 242
             ||||||||
Sbjct: 88766 cggtgcag 88759
to top
>gb|AF308474.1|AF308474 Hordeum vulgare asparaginase gene, complete cds
          Length = 2659

 Score =  109 bits (55), Expect = 4e-21
 Identities = 64/67 (95%)
 Strand = Plus / Minus

                                                                        
Query: 176  tcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacatgcc 235
            ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 2659 tcactcccagatgccgacctccatgaatccgtcctcggtggcgcagcctctgaacatgcc 2600

                   
Query: 236  ggtgcag 242
            |||||||
Sbjct: 2599 ggtgcag 2593
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  103 bits (52), Expect = 2e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                            
Query: 175      ctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacatgc 234
                |||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct: 33198197 ctcactcccagatgccgacctccatgaatccgtcctcggtggcgcaccctctgaacatgc 33198138

                        
Query: 235      cggtgcag 242
                ||||||||
Sbjct: 33198137 cggtgcag 33198130
to top
>dbj|AK121820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099C17, full
            insert sequence
          Length = 1286

 Score =  103 bits (52), Expect = 2e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                        
Query: 175  ctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacatgc 234
            |||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct: 1075 ctcactcccagatgccgacctccatgaatccgtcctcggtggcgcaccctctgaacatgc 1016

                    
Query: 235  cggtgcag 242
            ||||||||
Sbjct: 1015 cggtgcag 1008
to top
>dbj|AK068693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163N01, full
            insert sequence
          Length = 2801

 Score =  103 bits (52), Expect = 2e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                        
Query: 175  ctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacatgc 234
            |||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct: 2588 ctcactcccagatgccgacctccatgaatccgtcctcggtggcgcaccctctgaacatgc 2529

                    
Query: 235  cggtgcag 242
            ||||||||
Sbjct: 2528 cggtgcag 2521
to top
>dbj|AK058733.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F12, full
           insert sequence
          Length = 1187

 Score =  103 bits (52), Expect = 2e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                       
Query: 175 ctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacatgc 234
           |||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct: 975 ctcactcccagatgccgacctccatgaatccgtcctcggtggcgcaccctctgaacatgc 916

                   
Query: 235 cggtgcag 242
           ||||||||
Sbjct: 915 cggtgcag 908
to top
>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02,
             complete sequence
          Length = 165745

 Score =  103 bits (52), Expect = 2e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                         
Query: 175   ctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacatgc 234
             |||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct: 80846 ctcactcccagatgccgacctccatgaatccgtcctcggtggcgcaccctctgaacatgc 80787

                     
Query: 235   cggtgcag 242
             ||||||||
Sbjct: 80786 cggtgcag 80779
to top
>ref|XM_474137.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1002

 Score =  101 bits (51), Expect = 1e-18
 Identities = 63/67 (94%)
 Strand = Plus / Minus

                                                                        
Query: 176  tcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacatgcc 235
            ||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||
Sbjct: 1002 tcactcccagatgccgacctccatgaatccgtcctcggtggcgcaccctctgaacatgcc 943

                   
Query: 236  ggtgcag 242
            |||||||
Sbjct: 942  ggtgcag 936
to top
>gb|AY110762.1| Zea mays CL2945_1 mRNA sequence
          Length = 487

 Score =  101 bits (51), Expect = 1e-18
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                       
Query: 174 gctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacatg 233
           ||||||||||||||||||||||||||||| ||||||||||  |||||||||| |||||||
Sbjct: 188 gctcactcccagatgccgacctccatgaacccgtcctcggnggcgcagccccggaacatg 247

                    
Query: 234 ccggtgcag 242
           |||| ||||
Sbjct: 248 ccggngcag 256
to top
>gb|DQ300284.2| Phaseolus vulgaris L-asparaginase 2 mRNA, complete cds
          Length = 981

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                 
Query: 180 tcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacatg 233
           |||||||| || ||| ||||||| || |||||||| ||||||||||||||||||
Sbjct: 977 tcccagattccaaccaccatgaatccatcctcggtggcgcagcccctgaacatg 924
to top
>dbj|AP006428.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT04J15, TM0321,
              complete sequence
          Length = 127049

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                 
Query: 192    acctccatgaagccgtcctcggttgcgcagcccctgaacatgccggtgcag 242
              ||||||||||| || ||||| || || |||||||||||||||||| |||||
Sbjct: 119637 acctccatgaacccatcctcagtggcacagcccctgaacatgccgttgcag 119687
to top
>gb|AY096000.1| Glycine max L-asparaginase mRNA, complete cds
          Length = 1258

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 180  tcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacatgcc 235
            |||||||| ||||||||||||||||| |  || || || |||||||| ||||||||
Sbjct: 1033 tcccagattccgacctccatgaagccattttcagtggcacagcccctaaacatgcc 978
to top
>ref|NM_112485.2| Arabidopsis thaliana asparaginase AT3G16150 mRNA, complete cds
          Length = 1278

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 175  ctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacat 232
            |||||||||| ||  | ||||||||||| || ||||| ||||| || |||||||||||
Sbjct: 1036 ctcactcccaaatagcaacctccatgaatccatcctcagttgcacatcccctgaacat 979
to top
>emb|BX822707.1|CNS0A607 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB59ZF11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1259

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 175  ctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacat 232
            |||||||||| ||  | ||||||||||| || ||||| ||||| || |||||||||||
Sbjct: 1017 ctcactcccaaatagcaacctccatgaatccatcctcagttgcacatcccctgaacat 960
to top
>emb|BX822223.1|CNS0A5VW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB20ZF12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1205

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 175  ctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacat 232
            |||||||||| ||  | ||||||||||| || ||||| ||||| || |||||||||||
Sbjct: 1017 ctcactcccaaatagcaacctccatgaatccatcctcagttgcacatcccctgaacat 960
to top
>gb|AY086130.1| Arabidopsis thaliana clone 21689 mRNA, complete sequence
          Length = 1202

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 175  ctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacat 232
            |||||||||| ||  | ||||||||||| || ||||| ||||| || |||||||||||
Sbjct: 1035 ctcactcccaaatagcaacctccatgaatccatcctcagttgcacatcccctgaacat 978
to top
>dbj|AK118259.1| Arabidopsis thaliana At3g16150 mRNA for putative L-asparaginase,
            complete cds, clone: RAFL19-56-B19
          Length = 1291

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 175  ctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacat 232
            |||||||||| ||  | ||||||||||| || ||||| ||||| || |||||||||||
Sbjct: 1124 ctcactcccaaatagcaacctccatgaatccatcctcagttgcacatcccctgaacat 1067
to top
>dbj|AB012247.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSL1
          Length = 79355

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                       
Query: 175   ctcactcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacat 232
             |||||||||| ||  | ||||||||||| || ||||| ||||| || |||||||||||
Sbjct: 65253 ctcactcccaaatagcaacctccatgaatccatcctcagttgcacatcccctgaacat 65196
to top
>gb|BT024724.1| Arabidopsis thaliana At3g16150 mRNA, complete cds
          Length = 978

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 192 acctccatgaagccgtcctcggttgcgcagcccctgaacat 232
           ||||||||||| || ||||| ||||| || |||||||||||
Sbjct: 962 acctccatgaatccatcctcagttgcacatcccctgaacat 922
to top
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 108     acaggatggccaaatgtatg 127
               ||||||||||||||||||||
Sbjct: 3149407 acaggatggccaaatgtatg 3149426
to top
>gb|AC103664.12| Mus musculus chromosome 7, clone RP23-348F4, complete sequence
          Length = 222413

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     agctcatggttatgaaggaa 60
              ||||||||||||||||||||
Sbjct: 183980 agctcatggttatgaaggaa 183999
to top
>dbj|AB089506.1| Glycine max GM-ASNASE1 mRNA for L-asparaginase, complete cds
          Length = 1010

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 180 tcccagatgccgacctccatgaagccgtcctcggttgcgcagcccctgaacatgcc 235
           |||||||| || |||||||||||||| |  || || || |||||||| ||||||||
Sbjct: 980 tcccagattccaacctccatgaagccattttcagtggcacagcccctaaacatgcc 925


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,643,012
Number of Sequences: 3902068
Number of extensions: 1643012
Number of successful extensions: 28436
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28395
Number of HSP's gapped (non-prelim): 42
length of query: 242
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 220
effective length of database: 17,147,199,772
effective search space: 3772383949840
effective search space used: 3772383949840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top