Clone Information

BLAST Search Result

Clone Name	rbastl09h07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) ...	60	2e-09
2	COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) ...	59	2e-09
3	COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) ...	41	8e-04
4	TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorti...	33	0.13
5	BSN_RAT (O88778) Bassoon protein	33	0.13
6	SYFM_DROME (O16129) Probable phenylalanyl-tRNA synthetase, mitoc...	33	0.17
7	GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated ...	33	0.23
8	GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated ...	32	0.39
9	SFR17_HUMAN (Q8TF01) Splicing factor, arginine/serine-rich 130 (...	31	0.66
10	CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor	30	1.1
11	BSN_MOUSE (O88737) Bassoon protein	30	1.5
12	SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sem...	30	1.5
13	SP96_DICDI (P14328) Spore coat protein SP96	30	1.5
14	FTSK_YERPE (Q8ZGC7) DNA translocase ftsK	30	1.5
15	DUT_HUMAN (P33316) Deoxyuridine 5'-triphosphate nucleotidohydrol...	30	1.9
16	CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor	30	1.9
17	CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 ...	29	2.5
18	Y215_ADE02 (P03291) Hypothetical protein F-215	29	2.5
19	NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3...	29	2.5
20	CAPP_RALSO (Q8XWW2) Phosphoenolpyruvate carboxylase (EC 4.1.1.31...	29	2.5
21	CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor	29	2.5
22	ZN710_MOUSE (Q3U288) Zinc finger protein 710	29	3.3
23	KOK0_YEAST (Q12236) Probable serine/threonine-protein kinase YOL...	29	3.3
24	TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorti...	29	3.3
25	EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen)	28	4.3
26	ZN710_HUMAN (Q8N1W2) Zinc finger protein 710	28	4.3
27	RGYR1_SULTO (Q971T7) Reverse gyrase 1 [Includes: Helicase (EC 3....	28	4.3
28	VE7_BPV5 (Q8BDG6) Protein E7	28	4.3
29	NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 p...	28	4.3
30	PI2R_MOUSE (P43252) Prostacyclin receptor (Prostanoid IP recepto...	28	4.3
31	VE2_HPV19 (P36786) Regulatory protein E2	28	5.6
32	CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21	28	5.6
33	H5_CAIMO (P06513) Histone H5	28	7.3
34	SEM4D_HUMAN (Q92854) Semaphorin-4D precursor (Leukocyte activati...	28	7.3
35	MBD1_MOUSE (Q9Z2E2) Methyl-CpG-binding domain protein 1 (Methyl-...	28	7.3
36	ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related home...	28	7.3
37	ACH10_CHICK (Q9I8C7) Neuronal acetylcholine receptor protein, al...	28	7.3
38	BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)	27	9.5
39	PCQAP_MOUSE (Q924H2) Positive cofactor 2 glutamine/Q-rich-associ...	27	9.5
40	CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alph...	27	9.5
41	OVO_DROME (P51521) Protein ovo (Protein shaven baby)	27	9.5

>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
            (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
            peptide); Proxenin]
          Length = 1224

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 25/64 (39%), Positives = 37/64 (57%)
 Frame = -2

Query: 350  DFRNPFVVCGATFVPIYRGQKDVSCPYCASRFVPSVEGQLCSICELSVVGADASGLLCSP 171
            D  NPF +C A++ PIYRG+    CP   + + P  +GQ+C +  ++ +G D  GL  SP
Sbjct: 1161 DMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEIGKDVIGLRISP 1220

Query: 170  TQSR 159
             Q R
Sbjct: 1221 LQFR 1224

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>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
            (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
            peptide); Proxenin]
          Length = 1224

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 25/64 (39%), Positives = 37/64 (57%)
 Frame = -2

Query: 350  DFRNPFVVCGATFVPIYRGQKDVSCPYCASRFVPSVEGQLCSICELSVVGADASGLLCSP 171
            D  NPF +C A++ PIYRG+    CP   + + P  +GQ+C +  ++ +G D  GL  SP
Sbjct: 1161 DMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDVIGLRISP 1220

Query: 170  TQSR 159
             Q R
Sbjct: 1221 LQFR 1224

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>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
          Length = 1201

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = -2

Query: 335  FVVCGATFVPIYRGQKDVSCPYCASRFVPSVEGQLCSICELSVVGADASGL 183
            F +C AT+ PIY     VS P   S++V + + ++  I  +S +GA ASGL
Sbjct: 1147 FDICAATYKPIYEDTPSVSDPLTGSKYVITEKDKIDRIAMISKIGAPASGL 1197

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>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)|
          Length = 1287

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
 Frame = -3

Query: 298 AGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGR--------TPQASSAPLHNRDKISGD 143
           AGR   P P +  GSCP +R+     A +R  GR        TP+A ++P   R    G+
Sbjct: 522 AGRCLLPRPKSLAGSCPSTRLLTLEEAQARTQGRLGTPTEPTTPKAPASPAERRKGERGE 581

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>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
 Frame = -3

Query: 346  SETRSSFAGQPLSRSTAGRRTSPA------PTARPGSCP------QSRVSCAAYASSRWS 203
            S+ R     QP +RSTA   + PA      PT  PG  P      +   S    A +   
Sbjct: 3808 SQARLQQQSQPTTRSTAPAASHPAGKPQPGPTTAPGPQPAGLPRAEQAGSSKPAAKAPQQ 3867

Query: 202  GRTPQASSAP 173
            GR PQA SAP
Sbjct: 3868 GRAPQAQSAP 3877

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>SYFM_DROME (O16129) Probable phenylalanyl-tRNA synthetase, mitochondrial|
           precursor (EC 6.1.1.20) (Phenylalanine--tRNA ligase)
           (PheRS)
          Length = 453

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 307 RSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASS 179
           +ST    +S AP   P S PQ  VS + YA+  W+  TP+  S
Sbjct: 15  KSTRCLASSAAPAKSPSSPPQLEVSGSTYATDGWTNVTPKILS 57

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>GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated oncogene)|
           (Oncogene GLI)
          Length = 1106

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
 Frame = -3

Query: 343 ETRSSFAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSC-------------AAYASSRWS 203
           E RSS +    S  T  RR+S A    PGS P++  S              A YAS+R  
Sbjct: 540 ERRSSSSSSISSAYTVSRRSSLASPFPPGSPPENGASSLPGLMPAQHYLLRARYASARGG 599

Query: 202 GRTPQASSAPLHNRDKISG 146
           G +P A+S    + D+I G
Sbjct: 600 GTSPTAAS----SLDRIGG 614

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>GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated oncogene|
           homolog)
          Length = 1111

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
 Frame = -3

Query: 343 ETRSSFAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSC-------------AAYASSRWS 203
           + RSS +    S  T  RR+S A    PG+ P++  S              A YAS+R S
Sbjct: 542 DRRSSSSSSMSSAYTVSRRSSLASPFPPGTPPENGASSLPGLTPAQHYMLRARYASARGS 601

Query: 202 GRTPQASSAPLHNRDKISG 146
           G  P A+    H+ D++ G
Sbjct: 602 GTPPTAA----HSLDRMGG 616

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>SFR17_HUMAN (Q8TF01) Splicing factor, arginine/serine-rich 130|
           (Serine-arginine-rich splicing regulatory protein 130)
           (SRrp130) (SR-rich protein) (SR-related protein)
          Length = 805

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -3

Query: 319 QPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAP 173
           Q  SRS +    SP+  +R  S   S VS ++Y+SS  S RT   SS+P
Sbjct: 505 QGRSRSGSSSSGSPSSNSRTSST-SSTVSSSSYSSSSGSSRTSSRSSSP 552

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>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor|
          Length = 689

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 322 GQPLSRSTAGRRTSPAPTARPGSC-PQSRVSCAAYASSR 209
           G P +   AGR   P P   PG C P + +  +AYAS+R
Sbjct: 641 GSPGAPGEAGRPGLPGPVGLPGFCEPAACLGASAYASAR 679

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>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
 Frame = -3

Query: 346  SETRSSFAGQPLSRSTAGRRTSPA------PTARPGSCP-------QSRVSCAAYASSRW 206
            S+ R     QP +R TA   + PA      PT  PG  P       Q+  S    A +  
Sbjct: 3809 SQARLQPQSQPTTRGTAPAASQPAGKPQPGPTTAPGPQPAGPPRAEQASSSKPPAAKAPQ 3868

Query: 205  SGRTPQASSAP 173
             GR PQA + P
Sbjct: 3869 QGRAPQAQTTP 3879

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>SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sema J)|
           (Semaphorin C-like 2) (M-Sema G)
          Length = 861

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 292 RRTSPAPTARPGSCPQSRVSCAAYASS 212
           R   P PT RPG+C  S    A Y SS
Sbjct: 357 RYNGPVPTPRPGACIDSEARAANYTSS 383

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>SP96_DICDI (P14328) Spore coat protein SP96|
          Length = 600

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -3

Query: 346 SETRSSFAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSA 176
           S + SS A      S+A   +SP+ +A   S P S  S ++  SS  S  +  +SSA
Sbjct: 475 SSSPSSSAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSASSSSA 531

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>FTSK_YERPE (Q8ZGC7) DNA translocase ftsK|
          Length = 1305

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -3

Query: 346 SETRSSFAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAPL 170
           S T+S++      +ST G+ T PAP ++P     S +S +   +S  S  T   S+AP+
Sbjct: 720 SHTQSTYGQSTYGQSTYGQST-PAPVSQPVVTSASAISTSVTPTSIASLNTAPVSAAPV 777

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>DUT_HUMAN (P33316) Deoxyuridine 5'-triphosphate nucleotidohydrolase,|
           mitochondrial precursor (EC 3.6.1.23) (dUTPase) (dUTP
           pyrophosphatase)
          Length = 252

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -3

Query: 340 TRSSFAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAP 173
           +R +   +P  R  A +   P P +  G   Q     +   ++ W G  P+A  +P
Sbjct: 34  SRGTLRARPAPRPPAAQHGIPRPLSSAGRLSQGCRGASTVGAAGWKGELPKAGGSP 89

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>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 325 AGQPLSRSTAGRRTSPAPTARPG 257
           AG+P  R   G R SP PT RPG
Sbjct: 595 AGEPGPRGLLGPRGSPGPTGRPG 617

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>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-inter
          Length = 2897

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 310  SRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAPLHNRDKISGDDD 137
            SRS++   +S    +R GS   S  SC++ +SS  S  +  +SS+   + +  S +++
Sbjct: 2145 SRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEE 2202

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>Y215_ADE02 (P03291) Hypothetical protein F-215|
          Length = 215

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 334 SSFAGQPLSRSTAGRRTSPAPTAR-PGSCPQSRVSCAAYASSR 209
           SS  G    RSTA    SPA +AR   SCP++  +C    S R
Sbjct: 94  SSRRGARFRRSTAASSRSPATSARSTSSCPRAAPTCPCPLSRR 136

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>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
            (N-methyl D-aspartate receptor subtype 2C) (NR2C)
            (NMDAR2C)
          Length = 1239

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 17/74 (22%)
 Frame = -3

Query: 349  TSETRSSFAGQPLSRSTAG-----------RRTSPAPTARPGSC---PQ---SRVSCAAY 221
            TS  RS   G P   S +G            R +P P ARP +C   PQ   SR SC   
Sbjct: 934  TSGPRSCTPGPPGQPSPSGWRPPGGGRTPLARRAPQPPARPATCAGSPQPDVSRASCRHA 993

Query: 220  ASSRWSGRTPQASS 179
              +RW  R     S
Sbjct: 994  WDARWPVRVGHQGS 1007

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>CAPP_RALSO (Q8XWW2) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 985

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 331 SFAGQPLSRSTAGRRTSPAPTAR-PGSCPQSRVSCAAYASSRWSGRTPQASSAPL 170
           S A +  SR+T  R+T PAP ++ P   P      A   +SR S  +  A   PL
Sbjct: 4   SAARRASSRATPARKTPPAPASQTPAPSPGGTAGTALGPTSRRSSGSAAAKDQPL 58

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>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 322 GQPLSRSTAGRRTSPAPTARPGSC-PQSRVSCAAYASSR 209
           G P +   AGR   P P   PG C P + +  +AY S+R
Sbjct: 640 GSPGAPGEAGRPGRPGPVGLPGFCEPAACLGASAYTSAR 678

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>ZN710_MOUSE (Q3U288) Zinc finger protein 710|
          Length = 666

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
 Frame = -2

Query: 329 VCGATFVPIYR---------GQKDVSCPYCASRFVPSVEGQLC-------SICELSVVGA 198
           VCG +F  +Y          G K   CPYC+S+F  +++G L         + ++S+   
Sbjct: 553 VCGKSFNRMYNLLGHMHLHAGSKPFKCPYCSSKF--NLKGNLSRHMKVKHGVMDISLDSQ 610

Query: 197 DASGLLCSPTQSR*D 153
           D    L  P  S  D
Sbjct: 611 DPMMELAGPDPSELD 625

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>KOK0_YEAST (Q12236) Probable serine/threonine-protein kinase YOL100W (EC|
           2.7.11.1)
          Length = 1081

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 340 TRSSFAGQPLSRSTAGRRTSPAPTARPGS 254
           T+ +    P S S + R +SPA T+RPG+
Sbjct: 576 TKKTMQSYPTSSSKSSRSSSPATTSRPGT 604

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>TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)|
          Length = 1305

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = -3

Query: 298 AGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGR--------TPQASSAPLHNRDK 155
           AGR   P P +  GS P +R+     A +R  GR        TP+  ++P+  R +
Sbjct: 546 AGRCLLPRPKSLAGSSPSTRLLTLEEAQARTQGRLGTPTEPTTPKTPASPVERRKR 601

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>EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen)|
          Length = 5065

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +3

Query: 171  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 290
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 4612 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 4651



 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +3

Query: 171  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 290
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 4078 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 4117



 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +3

Query: 171  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 290
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 3544 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 3583



 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +3

Query: 171  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 290
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 3010 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 3049



 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +3

Query: 171  RGAEEA*GVRPDHRELAYAAQLTLD*GHEPGRAVGAGDVL 290
            R   EA   RPD RE   AA + +  G   GRAV   DVL
Sbjct: 2476 RAEAEAGSPRPDPREALRAATMEVKVGRLRGRAVPVWDVL 2515

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>ZN710_HUMAN (Q8N1W2) Zinc finger protein 710|
          Length = 664

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 9/34 (26%)
 Frame = -2

Query: 329 VCGATFVPIYR---------GQKDVSCPYCASRF 255
           VCG +F  +Y          G K   CPYC+S+F
Sbjct: 551 VCGKSFNRMYNLLGHMHLHAGSKPFKCPYCSSKF 584

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>RGYR1_SULTO (Q971T7) Reverse gyrase 1 [Includes: Helicase (EC 3.6.1.-);|
           Topoisomerase (EC 5.99.1.3)]
          Length = 1156

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 326 CGATFVPIYRGQKDVSCPYCASRFVPSVEGQLCSICELS 210
           CG TF       K  +CPYC S F+ S E  + ++ +LS
Sbjct: 661 CGKTFTI-----KSNTCPYCGSVFISSSEKVVSALRKLS 694

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>VE7_BPV5 (Q8BDG6) Protein E7|
          Length = 124

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 326 CGATFVPIYRGQKDVSCPYCASR 258
           C + F  + RG  D+ CP+CASR
Sbjct: 98  CISQFEQLLRGPLDLLCPHCASR 120

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>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
            (N-methyl D-aspartate receptor subtype 2C) (NR2C)
            (NMDAR2C)
          Length = 1237

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = -3

Query: 322  GQPLSRSTAGRRTSPAPTARPGSC-----PQSRVSCAAYASSRWSGR 197
            G P    T   R +P P ARP +C       SR SC   + +RW  R
Sbjct: 954  GPPGGGRTPLARRAPQPPARPATCGPPLPDVSRPSCRHASDARWPVR 1000

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>PI2R_MOUSE (P43252) Prostacyclin receptor (Prostanoid IP receptor) (PGI|
           receptor) (Prostaglandin I2 receptor)
          Length = 415

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 316 PLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAPLHNRDKIS 149
           PLSR  +GRR  PAPT+      Q++       SS  +G+    ++ PL   D  S
Sbjct: 349 PLSRPASGRRDPPAPTSL-----QAKEGSWVPLSSWGTGQVAPLTAVPLTGGDGCS 399

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>VE2_HPV19 (P36786) Regulatory protein E2|
          Length = 493

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -3

Query: 346 SETRSSFAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAPLH 167
           S ++S    +  SRS +  R S + + R  S  + R   +  A+S  S R+P A+S+   
Sbjct: 268 SRSKSKSRSRSRSRSLSSNRRSRSKSRRKASTTRGRGRGSPTATSDQSSRSPSATSSTTS 327

Query: 166 NRDK 155
            R +
Sbjct: 328 LRSR 331

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>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 346 SETRS-SFAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWS 203
           S +RS S +  PLS S + R  SP+ +  P  C  SR    A+   R S
Sbjct: 283 SRSRSRSRSRSPLSHSRSSRSRSPSRSRSPSRCASSRSRSPAHRPRRHS 331

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>H5_CAIMO (P06513) Histone H5|
          Length = 193

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -3

Query: 343 ETRSSFAGQPLSRSTAGRRTSPAPTARP--GSCPQSRVSCAAYASSRWSGRTPQASSAP 173
           + + S AG+   +  A R TSP   ARP     P  +   AA  + + S  +P+ +  P
Sbjct: 101 KAKKSPAGRKKKKKAARRSTSPRKAARPRKARSPAKKPKAAARKARKKSRASPKKAKKP 159

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>SEM4D_HUMAN (Q92854) Semaphorin-4D precursor (Leukocyte activation antigen|
           CD100) (BB18) (A8) (GR3)
          Length = 862

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 292 RRTSPAPTARPGSCPQSRVSCAAYASS 212
           R   P P  RPG+C  S    A Y SS
Sbjct: 357 RYNGPVPKPRPGACIDSEARAANYTSS 383

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>MBD1_MOUSE (Q9Z2E2) Methyl-CpG-binding domain protein 1 (Methyl-CpG-binding|
           protein MBD1)
          Length = 636

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -2

Query: 326 CGATFVPIYRGQ---KDVSCPYCASRFVPSVEGQLCSICELSVVGADASGLLCSPTQSR 159
           C A  +   R Q   K V C  CA+  V    G +CS C L +    ASGL C   + R
Sbjct: 175 CRAQRIAFNREQRMFKRVGCGDCAACLVKEDCG-VCSTCRLQLPSDVASGLYCKCERRR 232

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>ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related homeobox)|
          Length = 562

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = -3

Query: 325 AGQPLSRSTAGRRTS----PAPTARPGSCPQ---SRVSCAAYASSRWSGRTPQASSAP 173
           A    + +TAG R      P PTARPG  P    +  + AA A++ W   T + S AP
Sbjct: 110 AAAAAATATAGPRGEAPPPPPPTARPGERPDGAGAAAAAAAAAAAAWD--TLKISQAP 165

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>ACH10_CHICK (Q9I8C7) Neuronal acetylcholine receptor protein, alpha-10 subunit|
           precursor (Nicotinic acetylcholine receptor subunit
           alpha 10) (NACHR alpha 10) (Alpha 10 nAChR)
          Length = 452

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -3

Query: 322 GQPLSRSTAGR--RTSPAPTARPGSCPQSRVSCAAYA 218
           G+P    T G   R  P     PG CP+SR  C  +A
Sbjct: 360 GRPQREGTGGMGPRDPPGEGVEPGLCPRSRCLCHHHA 396

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>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)|
          Length = 606

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 340 TRSSFAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASS 212
           +R   A  PL    A   ++P+PT  PGS P   V   + A S
Sbjct: 556 SRPDSASPPLPLPLARPPSTPSPTLNPGSPPGRSVDSCSQAQS 598

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>PCQAP_MOUSE (Q924H2) Positive cofactor 2 glutamine/Q-rich-associated protein|
           (PC2 glutamine/Q-rich-associated protein) (mPcqap)
          Length = 792

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 280 PAPTARPGSCPQSRVSC--AAYASSRWSGRTPQASSAPLHNR 161
           P P+ +PGS P S VS   A   SS     +PQ S +P+  R
Sbjct: 456 PQPSPQPGSQPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTAR 497

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>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.1)
          Length = 2254

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
 Frame = -3

Query: 346  SETRSSFAGQPLSRSTAGRRTSPAPTARPGS------CPQSRVSCAA---YASSRWSGRT 194
            S  +SS  G   +  +  RRTS + +A PG+      CP S  S       A+S W+ R 
Sbjct: 1027 SHPKSSSTGVGEALGSGSRRTSSSGSAEPGAAHHEMKCPPSARSSPHSPWSAASSWTSRR 1086

Query: 193  PQASS---APLHNRDKISGD 143
               +S   AP   R   SG+
Sbjct: 1087 SSRNSLGRAPSLKRRSPSGE 1106

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>OVO_DROME (P51521) Protein ovo (Protein shaven baby)|
          Length = 1351

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 316 PLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQASSAPL 170
           PLS S +G   SP PT++P   PQ +         +  G+ P +   PL
Sbjct: 38  PLSPSGSGSGPSPTPTSQPPPEPQGQ-------GQQVLGQVPDSDQQPL 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,111,417
Number of Sequences: 219361
Number of extensions: 828482
Number of successful extensions: 3334
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 3121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3326
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result