ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl09h07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 654 bits (330), Expect = 0.0 Identities = 343/346 (99%), Gaps = 1/346 (0%) Strand = Plus / Plus Query: 6 gaaccaattatactatacttattcctcgcaagttgggtgataaaaaatctctggtaggta 65 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 799 gaaccaattatactatacttattcctcgcaagttgggtgataaaaa-tctctggtaggta 857 Query: 66 gaatataactgacacaacagtcttcgaactggagatacaaacatgatgaacacggaggtg 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 858 gaatataactgacacaacagtcttcgaactggagatacaaacatgatgaacacggaggtg 917 Query: 126 aagccacaatagtcgtcgtcgccacttatcttatctcgattgtgtaggggagcagaggag 185 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 918 aagccacaatagtcgtcgttgccacttatcttatctcgattgtgtaggggagcagaggag 977 Query: 186 gcctgaggcgtccgccccgaccaccgagagctcgcatatgctgcacagctgaccctcgac 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 978 gcctgaggcgtccgccccgaccaccgagagctcgcatatgctgcacagctgaccctcgac 1037 Query: 246 tgagggcacgaaccgggacgcgcagtaggggcaggagacgtccttctgcccgcggtagat 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1038 tgagggcacgaaccgggacgcgcagtaggggcaggagacgtccttctgcccgcggtagat 1097 Query: 306 cgggacaaaggttgccccgcaaacgacgaacgggtttctgaagtcg 351 ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1098 cgggacaaaggttgccccgcagacgacgaacgggtttctgaagtcg 1143
>gb|AF176226.1|AF176226 Triticum aestivum COP alpha homolog mRNA, partial cds Length = 1826 Score = 75.8 bits (38), Expect = 8e-11 Identities = 56/62 (90%) Strand = Plus / Minus Query: 164 attgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgagagctcgcata 223 |||||||||||||||| |||||||| ||||||||||| |||||||| | |||||||||| Sbjct: 1591 attgtgtaggggagcacaggaggcccgaggcgtccgcgccgaccacagccagctcgcata 1532 Query: 224 tg 225 || Sbjct: 1531 tg 1530
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 5e-09 Identities = 122/151 (80%) Strand = Plus / Plus Query: 155 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 214 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 28424885 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 28424944 Query: 215 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 274 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 28424945 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 28425004 Query: 275 ggcaggagacgtccttctgcccgcggtagat 305 ||||||| || |||||||| || |||||||| Sbjct: 28425005 ggcaggaaacatccttctggccacggtagat 28425035
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 5e-09 Identities = 122/151 (80%) Strand = Plus / Plus Query: 155 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 214 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 28516209 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 28516268 Query: 215 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 274 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 28516269 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 28516328 Query: 275 ggcaggagacgtccttctgcccgcggtagat 305 ||||||| || |||||||| || |||||||| Sbjct: 28516329 ggcaggaaacatccttctggccacggtagat 28516359
>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence Length = 143681 Score = 69.9 bits (35), Expect = 5e-09 Identities = 122/151 (80%) Strand = Plus / Plus Query: 155 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 214 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 19015 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 19074 Query: 215 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 274 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 19075 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 19134 Query: 275 ggcaggagacgtccttctgcccgcggtagat 305 ||||||| || |||||||| || |||||||| Sbjct: 19135 ggcaggaaacatccttctggccacggtagat 19165
>dbj|AK100286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075G08, full insert sequence Length = 4221 Score = 69.9 bits (35), Expect = 5e-09 Identities = 122/151 (80%) Strand = Plus / Minus Query: 155 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 214 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 3802 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 3743 Query: 215 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 274 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 3742 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 3683 Query: 275 ggcaggagacgtccttctgcccgcggtagat 305 ||||||| || |||||||| || |||||||| Sbjct: 3682 ggcaggaaacatccttctggccacggtagat 3652
>dbj|AK059218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C10, full insert sequence Length = 1032 Score = 69.9 bits (35), Expect = 5e-09 Identities = 122/151 (80%) Strand = Plus / Minus Query: 155 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 214 |||||||||| || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 906 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 847 Query: 215 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 274 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 846 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 787 Query: 275 ggcaggagacgtccttctgcccgcggtagat 305 ||||||| || |||||||| || |||||||| Sbjct: 786 ggcaggaaacatccttctggccacggtagat 756
>ref|XM_469513.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3657 Score = 67.9 bits (34), Expect = 2e-08 Identities = 121/150 (80%) Strand = Plus / Minus Query: 156 ttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgagag 215 ||||||||| || ||||||||||||||||||||||| || || || || ||||| | || Sbjct: 3657 ttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaag 3598 Query: 216 ctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtaggg 275 ||| |||||| | || ||||| || |||| || || || |||||||| | ||||| || Sbjct: 3597 ctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacgg 3538 Query: 276 gcaggagacgtccttctgcccgcggtagat 305 |||||| || |||||||| || |||||||| Sbjct: 3537 gcaggaaacatccttctggccacggtagat 3508
>ref|XM_450153.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1736 Score = 56.0 bits (28), Expect = 8e-05 Identities = 118/148 (79%) Strand = Plus / Minus Query: 155 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 214 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 1516 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 1457 Query: 215 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 274 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 1456 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 1397 Query: 275 ggcaggagacgtccttctgcccgcggta 302 ||||||| || |||||||| || ||||| Sbjct: 1396 ggcaggaaacatccttctggccacggta 1369
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 56.0 bits (28), Expect = 8e-05 Identities = 118/148 (79%) Strand = Plus / Plus Query: 155 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 214 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 2074192 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 2074251 Query: 215 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 274 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 2074252 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 2074311 Query: 275 ggcaggagacgtccttctgcccgcggta 302 ||||||| || |||||||| || ||||| Sbjct: 2074312 ggcaggaaacatccttctggccacggta 2074339
>dbj|AP005680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1352_A10 Length = 111655 Score = 56.0 bits (28), Expect = 8e-05 Identities = 118/148 (79%) Strand = Plus / Plus Query: 155 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 214 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 109559 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 109618 Query: 215 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 274 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 109619 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 109678 Query: 275 ggcaggagacgtccttctgcccgcggta 302 ||||||| || |||||||| || ||||| Sbjct: 109679 ggcaggaaacatccttctggccacggta 109706
>dbj|AK105672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A08, full insert sequence Length = 3045 Score = 56.0 bits (28), Expect = 8e-05 Identities = 118/148 (79%) Strand = Plus / Minus Query: 155 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 214 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 2581 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 2522 Query: 215 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 274 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 2521 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 2462 Query: 275 ggcaggagacgtccttctgcccgcggta 302 ||||||| || |||||||| || ||||| Sbjct: 2461 ggcaggaaacatccttctggccacggta 2434
>dbj|AK103786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I16, full insert sequence Length = 4284 Score = 56.0 bits (28), Expect = 8e-05 Identities = 118/148 (79%) Strand = Plus / Minus Query: 155 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 214 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 3885 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 3826 Query: 215 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 274 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 3825 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 3766 Query: 275 ggcaggagacgtccttctgcccgcggta 302 ||||||| || |||||||| || ||||| Sbjct: 3765 ggcaggaaacatccttctggccacggta 3738
>dbj|AK058402.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B07, full insert sequence Length = 1736 Score = 56.0 bits (28), Expect = 8e-05 Identities = 118/148 (79%) Strand = Plus / Minus Query: 155 cttatctcgattgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgaga 214 |||||||| | || ||||||||||||||||||||||| || || || || ||||| | | Sbjct: 1516 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 1457 Query: 215 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 274 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 1456 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 1397 Query: 275 ggcaggagacgtccttctgcccgcggta 302 ||||||| || |||||||| || ||||| Sbjct: 1396 ggcaggaaacatccttctggccacggta 1369
>gb|AY104039.1| Zea mays PCO096800 mRNA sequence Length = 1207 Score = 46.1 bits (23), Expect = 0.075 Identities = 32/35 (91%) Strand = Plus / Minus Query: 169 gtaggggagcagaggaggcctgaggcgtccgcccc 203 ||||||||||||| |||||||||||||| ||||| Sbjct: 880 gtaggggagcagaccaggcctgaggcgtctgcccc 846
>gb|AC157556.12| Mus musculus chromosome 1, clone RP24-267A19, complete sequence Length = 198267 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 gaactggagatacaaacatga 111 ||||||||||||||||||||| Sbjct: 145020 gaactggagatacaaacatga 145000
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tcgtcgtcgccacttatctt 157 |||||||||||||||||||| Sbjct: 3481636 tcgtcgtcgccacttatctt 3481617
>gb|AC005021.1| Homo sapiens BAC clone GS1-293C5 from 7, complete sequence Length = 64607 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aaaaatctctggtaggtaga 67 |||||||||||||||||||| Sbjct: 61607 aaaaatctctggtaggtaga 61626
>gb|AC079059.10| Homo sapiens chromosome 18, clone RP11-281L12, complete sequence Length = 145993 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 aggggagcagaggaggcctgaggcgtcc 198 |||| |||||||||||| |||||||||| Sbjct: 90006 agggcagcagaggaggcatgaggcgtcc 89979
>gb|AC021594.9| Homo sapiens, clone RP11-154H12, complete sequence Length = 162336 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 aggggagcagaggaggcctgaggcgtcc 198 |||| |||||||||||| |||||||||| Sbjct: 97972 agggcagcagaggaggcatgaggcgtcc 97945
>gb|AC109636.3| Homo sapiens BAC clone RP11-19D21 from 4, complete sequence Length = 71715 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 aaaaaatctctggtaggtag 66 |||||||||||||||||||| Sbjct: 42043 aaaaaatctctggtaggtag 42062
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 tcgtcgtcgccacttatctt 157 |||||||||||||||||||| Sbjct: 4291068 tcgtcgtcgccacttatctt 4291087
>gb|AY210982.1| Homo sapiens paraoxonase 2 (PON2) gene, complete cds Length = 32705 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 aaaaatctctggtaggtaga 67 |||||||||||||||||||| Sbjct: 2452 aaaaatctctggtaggtaga 2433
>ref|XM_308807.2| Anopheles gambiae str. PEST ENSANGP00000021654 (ENSANGG00000019165), partial mRNA Length = 2516 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggcgtccgccccgaccaccg 211 |||||||||||||||||||| Sbjct: 1017 ggcgtccgccccgaccaccg 998 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,253,443 Number of Sequences: 3902068 Number of extensions: 2253443 Number of successful extensions: 37604 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37496 Number of HSP's gapped (non-prelim): 107 length of query: 351 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 329 effective length of database: 17,147,199,772 effective search space: 5641428724988 effective search space used: 5641428724988 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
