ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome... 64 3e-07
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
3dbj|AK102476.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
4dbj|AK058522.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
5gb|AY104073.1| Zea mays PCO099302 mRNA sequence 48 0.016
6ref|XM_506339.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.064
7ref|XM_478107.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.064
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.064
9dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic D... 46 0.064
10dbj|AP005479.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.064
11dbj|AK122057.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.064
12dbj|AK067097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.064
13dbj|AK064915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.064
14ref|XM_468390.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.25
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
16dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
17gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1... 44 0.25
18ref|NM_104035.2| Arabidopsis thaliana unknown protein AT1G51570 ... 42 1.00
19gb|AY054155.1| Arabidopsis thaliana At1g51570/F19C24.20 mRNA, co... 42 1.00
20gb|AY045695.1| Arabidopsis thaliana F19C24.20/F19C24.20 mRNA, co... 42 1.00
21gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F1... 42 1.00
22gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D... 42 1.00
23gb|AY112391.1| Zea mays CL5467_2 mRNA sequence 42 1.00
24gb|AY111168.1| Zea mays CL5467_1 mRNA sequence 42 1.00
25gb|AF099917.1| Caenorhabditis elegans cosmid F54D10, complete se... 40 3.9
26emb|AJ299436.2|LRU299436 Lumbricus rubellus mt2C gene for metall... 40 3.9
27gb|AC092355.2| Homo sapiens chromosome 7 clone RP11-310D24, comp... 40 3.9
28gb|AC108146.3| Homo sapiens BAC clone RP11-437H3 from 2, complet... 40 3.9
29gb|AC158470.1| Postia placenta clone JGIACWS-5E10, complete sequ... 40 3.9
30gb|AY111562.1| Zea mays CL51463_1 mRNA sequence 40 3.9
31gb|AC171176.1| Mus musculus chromosome 3, clone wi1-2063J20, com... 40 3.9 
>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06,
             complete sequence
          Length = 136143

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                             
Query: 254   cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttca 301
             |||||| ||||||||| || |||||||| |||||||||||||||||||
Sbjct: 48394 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttca 48347
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                                
Query: 254      cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttca 301
                |||||| ||||||||| || |||||||| |||||||||||||||||||
Sbjct: 17671636 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttca 17671589
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>dbj|AK102476.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I04, full
            insert sequence
          Length = 3254

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 254  cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttca 301
            |||||| ||||||||| || |||||||| |||||||||||||||||||
Sbjct: 2751 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttca 2704
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>dbj|AK058522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H09, full
            insert sequence
          Length = 1888

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 254  cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttca 301
            |||||| ||||||||| || |||||||| |||||||||||||||||||
Sbjct: 1480 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttca 1433
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>gb|AY104073.1| Zea mays PCO099302 mRNA sequence
          Length = 1254

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 256 tacagcatgctatcggtccttgcaggcagcctcctgaagaagtt 299
           ||||||||||| |||||||| || ||||| | ||||||||||||
Sbjct: 990 tacagcatgctgtcggtcctcgccggcagacgcctgaagaagtt 947
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>ref|XM_506339.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_F08.109 mRNA
          Length = 3486

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 275  ttgcaggcagcctcctgaagaagttca 301
            ||||||| |||||||||||||||||||
Sbjct: 3326 ttgcaggtagcctcctgaagaagttca 3300
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>ref|XM_478107.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3402

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 275  ttgcaggcagcctcctgaagaagttca 301
            ||||||| |||||||||||||||||||
Sbjct: 3207 ttgcaggtagcctcctgaagaagttca 3181
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 275      ttgcaggcagcctcctgaagaagttca 301
                ||||||| |||||||||||||||||||
Sbjct: 17633773 ttgcaggtagcctcctgaagaagttca 17633799
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>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_F08
          Length = 134988

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 275   ttgcaggcagcctcctgaagaagttca 301
             ||||||| |||||||||||||||||||
Sbjct: 37806 ttgcaggtagcctcctgaagaagttca 37832
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>dbj|AP005479.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0045A07
          Length = 174165

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 275    ttgcaggcagcctcctgaagaagttca 301
              ||||||| |||||||||||||||||||
Sbjct: 161722 ttgcaggtagcctcctgaagaagttca 161748
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>dbj|AK122057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114M07, full
            insert sequence
          Length = 3592

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 275  ttgcaggcagcctcctgaagaagttca 301
            ||||||| |||||||||||||||||||
Sbjct: 3391 ttgcaggtagcctcctgaagaagttca 3365
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>dbj|AK067097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095C11, full
            insert sequence
          Length = 3402

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 275  ttgcaggcagcctcctgaagaagttca 301
            ||||||| |||||||||||||||||||
Sbjct: 3207 ttgcaggtagcctcctgaagaagttca 3181
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>dbj|AK064915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M15, full
            insert sequence
          Length = 3486

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 275  ttgcaggcagcctcctgaagaagttca 301
            ||||||| |||||||||||||||||||
Sbjct: 3326 ttgcaggtagcctcctgaagaagttca 3300
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>ref|XM_468390.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3000

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 280  ggcagcctcctgaagaagttca 301
            ||||||||||||||||||||||
Sbjct: 2975 ggcagcctcctgaagaagttca 2954
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 280      ggcagcctcctgaagaagttca 301
                ||||||||||||||||||||||
Sbjct: 34979788 ggcagcctcctgaagaagttca 34979767
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>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0643F09
          Length = 161001

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 280   ggcagcctcctgaagaagttca 301
             ||||||||||||||||||||||
Sbjct: 40129 ggcagcctcctgaagaagttca 40108
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>gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1i2, complete sequence
          Length = 154095

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 259   agcatgctatcggtccttgcaggcagcctcctgaagaa 296
             ||||||| ||| || |||||||||| ||||||||||||
Sbjct: 91505 agcatgcaatcagttcttgcaggcaacctcctgaagaa 91468
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>ref|NM_104035.2| Arabidopsis thaliana unknown protein AT1G51570 mRNA, complete cds
          Length = 2513

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 259  agcatgctatcggtccttgcaggcagcctcctgaagaagtt 299
            ||||||| ||| || ||||| || |||||||||||||||||
Sbjct: 2327 agcatgcaatcagttcttgctggaagcctcctgaagaagtt 2287
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>gb|AY054155.1| Arabidopsis thaliana At1g51570/F19C24.20 mRNA, complete cds
          Length = 873

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 259 agcatgctatcggtccttgcaggcagcctcctgaagaagtt 299
           ||||||| ||| || ||||| || |||||||||||||||||
Sbjct: 869 agcatgcaatcagttcttgctggaagcctcctgaagaagtt 829
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>gb|AY045695.1| Arabidopsis thaliana F19C24.20/F19C24.20 mRNA, complete cds
          Length = 1126

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 259 agcatgctatcggtccttgcaggcagcctcctgaagaagtt 299
           ||||||| ||| || ||||| || |||||||||||||||||
Sbjct: 934 agcatgcaatcagttcttgctggaagcctcctgaagaagtt 894
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>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete
              sequence
          Length = 124511

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 259    agcatgctatcggtccttgcaggcagcctcctgaagaagtt 299
              ||||||| ||| || ||||| || |||||||||||||||||
Sbjct: 123365 agcatgcaatcagttcttgctggaagcctcctgaagaagtt 123325
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>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete
             sequence
          Length = 92652

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 259   agcatgctatcggtccttgcaggcagcctcctgaagaagtt 299
             ||||||| ||| || ||||| || |||||||||||||||||
Sbjct: 18385 agcatgcaatcagttcttgctggaagcctcctgaagaagtt 18345
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>gb|AY112391.1| Zea mays CL5467_2 mRNA sequence
          Length = 648

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 275 ttgcaggcagcctcctgaagaagtt 299
           ||||||| |||||||||||||||||
Sbjct: 245 ttgcaggtagcctcctgaagaagtt 269
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>gb|AY111168.1| Zea mays CL5467_1 mRNA sequence
          Length = 574

 Score = 42.1 bits (21), Expect = 1.00
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 275 ttgcaggcagcctcctgaagaagtt 299
           ||||||| |||||||||||||||||
Sbjct: 215 ttgcaggtagcctcctgaagaagtt 239
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>gb|AF099917.1| Caenorhabditis elegans cosmid F54D10, complete sequence
          Length = 32563

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   gcaacggaaaaggctacaaa 112
            ||||||||||||||||||||
Sbjct: 5041 gcaacggaaaaggctacaaa 5060
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>emb|AJ299436.2|LRU299436 Lumbricus rubellus mt2C gene for metallothionein 2C, exons 1-4
          Length = 9629

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 77   aaacacagacatacaggcaa 96
            ||||||||||||||||||||
Sbjct: 7720 aaacacagacatacaggcaa 7701
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>gb|AC092355.2| Homo sapiens chromosome 7 clone RP11-310D24, complete sequence
          Length = 91792

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    aaaacacagacatacaggca 95
             ||||||||||||||||||||
Sbjct: 76720 aaaacacagacatacaggca 76701
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>gb|AC108146.3| Homo sapiens BAC clone RP11-437H3 from 2, complete sequence
          Length = 91810

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    aaaacacagacatacaggca 95
             ||||||||||||||||||||
Sbjct: 38386 aaaacacagacatacaggca 38405
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>gb|AC158470.1| Postia placenta clone JGIACWS-5E10, complete sequence
          Length = 33410

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   ggaaaaggctacaaacaacg 117
            ||||||||||||||||||||
Sbjct: 4549 ggaaaaggctacaaacaacg 4530
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>gb|AY111562.1| Zea mays CL51463_1 mRNA sequence
          Length = 612

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 256 tacagcatgctatcggtccttgcaggcagcctcctgaagaagtt 299
           ||||||||||| || ||||| || ||||| | ||||||||||||
Sbjct: 352 tacagcatgctgtcagtcctcgccggcagacgcctgaagaagtt 395
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>gb|AC171176.1| Mus musculus chromosome 3, clone wi1-2063J20, complete sequence
          Length = 40189

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    accatcctaaaacacagaca 87
             ||||||||||||||||||||
Sbjct: 12200 accatcctaaaacacagaca 12181


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,734,890
Number of Sequences: 3902068
Number of extensions: 2734890
Number of successful extensions: 44577
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44478
Number of HSP's gapped (non-prelim): 99
length of query: 301
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 279
effective length of database: 17,147,199,772
effective search space: 4784068736388
effective search space used: 4784068736388
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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