ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
2dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
3dbj|AK059339.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
4ref|XM_465115.1| Oryza sativa (japonica cultivar-group), mRNA 105 7e-20
5gb|AY106610.1| Zea mays PCO071903 mRNA sequence 78 2e-11
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
7dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
8dbj|AK100422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 4e-09
9dbj|AK058622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 4e-09
10ref|NM_113564.2| Arabidopsis thaliana ATP binding / ATP-dependen... 48 0.015
11emb|X98130.1|AT81KBGEN Arabidopsis thaliana 81kb genomic sequence 48 0.015
12emb|X97970.1|ATRNAHELI A.thaliana mRNA for RNA helicase 48 0.015
13dbj|AK222021.1| Arabidopsis thaliana mRNA for ATP-dependent RNA ... 48 0.015
14dbj|AB028611.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 48 0.015
15emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chr... 42 0.92
16emb|CR380958.1| Candida glabrata strain CBS138 chromosome L comp... 42 0.92
17gb|AC084494.1|CBRG10B04 Caenorhabditis briggsae cosmid G10B04, c... 42 0.92
18gb|AE000783.1| Borrelia burgdorferi B31, complete genome 42 0.92
19emb|CR848666.4| Zebrafish DNA sequence from clone DKEY-56F14 in ... 40 3.6
20gb|AC154318.3| Mus musculus BAC clone RP23-316D19 from chromosom... 40 3.6
21gb|AC109999.2| Homo sapiens chromosome 5 clone CTD-2265M6, compl... 40 3.6
22gb|AC091982.3| Homo sapiens chromosome 5 clone RP11-54C4, comple... 40 3.6
23gb|AC156833.2| Mus musculus BAC clone RP24-161C10 from chromosom... 40 3.6
24dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
25gb|AC154783.2| Mus musculus BAC clone RP24-466C8 from 12, comple... 40 3.6
26emb|AL445885.1|CNS07EES Human chromosome 14 DNA sequence BAC C-2... 40 3.6
27emb|AL352976.3|CNS05TBV Human chromosome 14 DNA sequence BAC R-4... 40 3.6
28emb|CR352249.24| Zebrafish DNA sequence from clone DKEY-97O18 in... 40 3.6
29emb|AL805982.10| Mouse DNA sequence from clone RP23-119K17 on ch... 40 3.6
30gb|M26922.1|MOTECLHA M.sexta eclosion hormone mRNA, complete cds 40 3.6
31gb|M27808.1|MOTECLH3 M.sexta eclosion hormone gene, exons 2 and ... 40 3.6
32gb|AC165250.2| Mus musculus BAC clone RP24-209D3 from chromosome... 40 3.6 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 1e-21
 Identities = 59/60 (98%)
 Strand = Plus / Minus

                                                                            
Query: 203      ccatcaagctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacag 262
                |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 11672422 ccatcaagctcggcgcttgctgagacgccaggagttgggctcatggtacctgtcgtacag 11672363



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 21       ttatctaaattatgatctga 40
                ||||||||||||||||||||
Sbjct: 30120107 ttatctaaattatgatctga 30120088
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>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0010K08
          Length = 184760

 Score =  111 bits (56), Expect = 1e-21
 Identities = 59/60 (98%)
 Strand = Plus / Minus

                                                                          
Query: 203    ccatcaagctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacag 262
              |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 118711 ccatcaagctcggcgcttgctgagacgccaggagttgggctcatggtacctgtcgtacag 118652
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>dbj|AK059339.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B03, full
            insert sequence
          Length = 1897

 Score =  111 bits (56), Expect = 1e-21
 Identities = 59/60 (98%)
 Strand = Plus / Minus

                                                                        
Query: 203  ccatcaagctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacag 262
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1643 ccatcaagctcggcgcttgctgagacgccaggagttgggctcatggtacctgtcgtacag 1584
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>ref|XM_465115.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3723

 Score =  105 bits (53), Expect = 7e-20
 Identities = 56/57 (98%)
 Strand = Plus / Minus

                                                                     
Query: 206  tcaagctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacag 262
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3723 tcaagctcggcgcttgctgagacgccaggagttgggctcatggtacctgtcgtacag 3667
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>gb|AY106610.1| Zea mays PCO071903 mRNA sequence
          Length = 585

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                       
Query: 205 atcaagctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacagag 264
           ||||||||||||||||||| |||||||| ||||||||||| ||||| || || || ||||
Sbjct: 494 atcaagctcggcgcttgctaagacgccaagagttgggctcgtggtatctatcatatagag 435

                  
Query: 265 gctcgat 271
           |||||||
Sbjct: 434 gctcgat 428
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                            
Query: 211      ctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcga 270
                |||||||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| |
Sbjct: 13566626 ctcggcgcttgctgaggcgccatgagtttggctcgttgtatctgtcatacagaggctcaa 13566685

                       
Query: 271      ttctttc 277
                | |||||
Sbjct: 13566686 tcctttc 13566692
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>dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0459H02
          Length = 168230

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                         
Query: 211   ctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcga 270
             |||||||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| |
Sbjct: 95116 ctcggcgcttgctgaggcgccatgagtttggctcgttgtatctgtcatacagaggctcaa 95175

                    
Query: 271   ttctttc 277
             | |||||
Sbjct: 95176 tcctttc 95182
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>dbj|AK100422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088B11, full
            insert sequence
          Length = 3516

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                        
Query: 211  ctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcga 270
            |||||||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| |
Sbjct: 3282 ctcggcgcttgctgaggcgccatgagtttggctcgttgtatctgtcatacagaggctcaa 3223

                   
Query: 271  ttctttc 277
            | |||||
Sbjct: 3222 tcctttc 3216
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>dbj|AK058622.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B10, full
           insert sequence
          Length = 1026

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                       
Query: 211 ctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcga 270
           |||||||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| |
Sbjct: 893 ctcggcgcttgctgaggcgccatgagtttggctcgttgtatctgtcatacagaggctcaa 834

                  
Query: 271 ttctttc 277
           | |||||
Sbjct: 833 tcctttc 827
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>ref|NM_113564.2| Arabidopsis thaliana ATP binding / ATP-dependent RNA helicase/
            ATP-dependent helicase/ RNA binding / helicase/ nucleic
            acid binding AT3G26560 mRNA, complete cds
          Length = 3753

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 219  ttgctgagacgccatgagttgggctcatggta 250
            |||||||||||||||||||| ||||| |||||
Sbjct: 3547 ttgctgagacgccatgagttaggctcgtggta 3516
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>emb|X98130.1|AT81KBGEN Arabidopsis thaliana 81kb genomic sequence
          Length = 81493

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 219  ttgctgagacgccatgagttgggctcatggta 250
            |||||||||||||||||||| ||||| |||||
Sbjct: 2259 ttgctgagacgccatgagttaggctcgtggta 2290
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>emb|X97970.1|ATRNAHELI A.thaliana mRNA for RNA helicase
          Length = 3734

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 219  ttgctgagacgccatgagttgggctcatggta 250
            |||||||||||||||||||| ||||| |||||
Sbjct: 3548 ttgctgagacgccatgagttaggctcgtggta 3517
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>dbj|AK222021.1| Arabidopsis thaliana mRNA for ATP-dependent RNA helicase, complete
           cds, clone: RAFL22-70-B08
          Length = 1030

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 219 ttgctgagacgccatgagttgggctcatggta 250
           |||||||||||||||||||| ||||| |||||
Sbjct: 834 ttgctgagacgccatgagttaggctcgtggta 803
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>dbj|AB028611.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MFE16
          Length = 82646

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 219   ttgctgagacgccatgagttgggctcatggta 250
             |||||||||||||||||||| ||||| |||||
Sbjct: 42729 ttgctgagacgccatgagttaggctcgtggta 42760
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>emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chromosome 9 Contains eight
              novel pseudogenes, two novel genes and three CpG islands,
              complete sequence
          Length = 181647

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    aaaaacttgtggctgggtatg 197
              |||||||||||||||||||||
Sbjct: 135520 aaaaacttgtggctgggtatg 135540
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>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence
          Length = 1440588

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    gtagtattatctaaattatga 35
             |||||||||||||||||||||
Sbjct: 48181 gtagtattatctaaattatga 48201
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>gb|AC084494.1|CBRG10B04 Caenorhabditis briggsae cosmid G10B04, complete sequence
          Length = 8263

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 186  tggctgggtatgatggaccat 206
            |||||||||||||||||||||
Sbjct: 4237 tggctgggtatgatggaccat 4257
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>gb|AE000783.1| Borrelia burgdorferi B31, complete genome
          Length = 910724

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    ttgagcgctgaagtttaaatattca 95
             |||||||||||| ||||||||||||
Sbjct: 56437 ttgagcgctgaattttaaatattca 56461
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>emb|CR848666.4| Zebrafish DNA sequence from clone DKEY-56F14 in linkage group 16,
             complete sequence
          Length = 106065

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 73    gagcgctgaagtttaaatattcat 96
             ||||| ||||||||||||||||||
Sbjct: 67151 gagcgatgaagtttaaatattcat 67128
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>gb|AC154318.3| Mus musculus BAC clone RP23-316D19 from chromosome 12, complete
            sequence
          Length = 176391

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   gtattatctaaattatgatc 37
            ||||||||||||||||||||
Sbjct: 2180 gtattatctaaattatgatc 2199
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>gb|AC109999.2| Homo sapiens chromosome 5 clone CTD-2265M6, complete sequence
          Length = 143750

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    gcataaatatgtacagtacc 174
              ||||||||||||||||||||
Sbjct: 121055 gcataaatatgtacagtacc 121074
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>gb|AC091982.3| Homo sapiens chromosome 5 clone RP11-54C4, complete sequence
          Length = 170368

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    gcataaatatgtacagtacc 174
              ||||||||||||||||||||
Sbjct: 100870 gcataaatatgtacagtacc 100851
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>gb|AC156833.2| Mus musculus BAC clone RP24-161C10 from chromosome 9, complete sequence
          Length = 166954

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     atctgaagcttggaaaactg 54
              ||||||||||||||||||||
Sbjct: 127819 atctgaagcttggaaaactg 127838
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>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0685G12
          Length = 149155

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    ttatctaaattatgatctga 40
             ||||||||||||||||||||
Sbjct: 99704 ttatctaaattatgatctga 99685
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>gb|AC154783.2| Mus musculus BAC clone RP24-466C8 from 12, complete sequence
          Length = 167125

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     gtattatctaaattatgatc 37
              ||||||||||||||||||||
Sbjct: 107934 gtattatctaaattatgatc 107915
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>emb|AL445885.1|CNS07EES Human chromosome 14 DNA sequence BAC C-2506J14 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170892

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 175    gcaaaaacttgtggctgggtatga 198
              ||||||||||||||||||| ||||
Sbjct: 170037 gcaaaaacttgtggctgggaatga 170014
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>emb|AL352976.3|CNS05TBV Human chromosome 14 DNA sequence BAC R-487K10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 180460

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 175   gcaaaaacttgtggctgggtatga 198
             ||||||||||||||||||| ||||
Sbjct: 80088 gcaaaaacttgtggctgggaatga 80065
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>emb|CR352249.24| Zebrafish DNA sequence from clone DKEY-97O18 in linkage group 7,
             complete sequence
          Length = 180142

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    aagcttggaaaactgaatca 59
             ||||||||||||||||||||
Sbjct: 85699 aagcttggaaaactgaatca 85718
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>emb|AL805982.10| Mouse DNA sequence from clone RP23-119K17 on chromosome X, complete
              sequence
          Length = 166357

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     tttaaatattcatacaggta 103
              ||||||||||||||||||||
Sbjct: 125926 tttaaatattcatacaggta 125907
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>gb|M26922.1|MOTECLHA M.sexta eclosion hormone mRNA, complete cds
          Length = 647

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 81  aagtttaaatattcatacag 100
           ||||||||||||||||||||
Sbjct: 409 aagtttaaatattcatacag 428
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>gb|M27808.1|MOTECLH3 M.sexta eclosion hormone gene, exons 2 and 3, clone lambda D39
          Length = 5425

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   aagtttaaatattcatacag 100
            ||||||||||||||||||||
Sbjct: 4872 aagtttaaatattcatacag 4891
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>gb|AC165250.2| Mus musculus BAC clone RP24-209D3 from chromosome 13, complete sequence
          Length = 173581

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     aaaactgaatcactcagtaa 67
              ||||||||||||||||||||
Sbjct: 128586 aaaactgaatcactcagtaa 128567


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,565,735
Number of Sequences: 3902068
Number of extensions: 2565735
Number of successful extensions: 50330
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50243
Number of HSP's gapped (non-prelim): 87
length of query: 279
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 257
effective length of database: 17,147,199,772
effective search space: 4406830341404
effective search space used: 4406830341404
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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