>L_PI2HT (P26676) Large structural protein (Protein L) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2262

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +2

Query: 110 REALNTTLRLGVQLS*AASVFP--RCSYWLQSAPMSF--KAVISLGKILPNASLKPMEQE 277
           RE  N   RLGV  S      P  R + W   A +      +  L K LP++ L+P+EQ 
Sbjct: 54  REESNLAERLGVAKSELIKRVPAFRATRWRSHAAVLIWPSCIPFLVKFLPHSKLQPVEQW 113

Query: 278 YSLL 289
           Y L+
Sbjct: 114 YKLI 117

>RGF1_SCHPO (Q9Y7U6) Rho1 guanine nucleotide exchange factor 1|
          Length = 1334

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 197  SAPMSFKAVISLGKILPNASLKPMEQEYSLLLSVGQASSFSLP 325
            ++P+ FK V +L   +PN S   + +EYSLLL +     +S P
Sbjct: 1026 NSPLQFKPVRALN--IPNISQLEVIEEYSLLLLLSDKVLYSYP 1066

>RPM1_CAEEL (Q17551) Ubiquitin ligase protein rpm-1 (EC 6.3.2.-)|
           (Pam/highwire/rpm-1 protein) (Regulator of presynaptic
           morphology protein 1) (Synapse defective protein 3)
          Length = 3766

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -3

Query: 318 LNDDACPTDSNKEYSCSMGFKLALGKILPRLITALKDIGADCSQYEHLGKT 166
           L +DACP+ S+K  SC +   +A                  C + EHLG T
Sbjct: 201 LREDACPSVSSKATSCLVALSVA------------------CGEPEHLGST 233

>ZYG1_CAEEL (Q9GT24) Probable serine/threonine-protein kinase zyg-1 (EC|
           2.7.11.1) (Zygote defective protein 1)
          Length = 706

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 226 DHSLEGHRSRL-QPVRAPREDRSR 158
           +HS +G R R  +PVR+ R+DRSR
Sbjct: 263 EHSRDGRRQRSREPVRSSRDDRSR 286

>SHCBP_HUMAN (Q8NEM2) SHC SH2 domain-binding protein 1|
          Length = 672

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 54  IQHLLFYYLNIWETW 10
           I+H+ F+Y NIW +W
Sbjct: 195 IEHVRFFYQNIWRSW 209

>BCTN7_SHEEP (P50415) Bactenecin-7 precursor (Bac7) (Cathelicidin-3) (PR-59)|
          Length = 190

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 176 RCSYWLQSAPMSFKAVISLGKILPNASLKPMEQEYSLLLSVGQASSFS 319
           RCS WL          + LG +LP+AS + +    ++L +VGQ +  S
Sbjct: 12  RCSLWL----------LLLGLLLPSASAQALSYREAVLRAVGQLNEKS 49

>YEW4_YEAST (P40081) Hypothetical 20.4 kDa protein in GLC7-GDI1 intergenic|
           region
          Length = 178

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 273 CSMGFKLALGKILPRLITALKDIGADCSQYEHLGKTEAAQE 151
           C  G++L + K +PR++  LKD G            E AQE
Sbjct: 44  CRDGYELTIYKDIPRILGDLKDNGVKLMTASRTWAPEIAQE 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,487,722
Number of Sequences: 219361
Number of extensions: 896101
Number of successful extensions: 2510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2508
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)