Clone Name | rbastl09g09 |
---|---|
Clone Library Name | barley_pub |
>emb|CR382292.9| Zebrafish DNA sequence from clone DKEY-96L17 in linkage group 5, complete sequence Length = 178208 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 62 catgacatttattgccatgtac 83 |||||||||||||||||||||| Sbjct: 130498 catgacatttattgccatgtac 130519
>emb|BX323038.3| Zebrafish DNA sequence from clone DKEYP-57D7 in linkage group 1, complete sequence Length = 87548 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Minus Query: 62 catgacatttattgccatgtac 83 |||||||||||||||||||||| Sbjct: 10888 catgacatttattgccatgtac 10867
>emb|BX936452.24| Zebrafish DNA sequence from clone CH211-282C13 in linkage group 13, complete sequence Length = 136110 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 catgacatttattgccatgta 82 ||||||||||||||||||||| Sbjct: 16063 catgacatttattgccatgta 16043
>gb|AC142291.1| Pan troglodytes BAC clone RP43-184P18 from 7, complete sequence Length = 152668 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 ttatgcacatgggttttttaa 226 ||||||||||||||||||||| Sbjct: 40034 ttatgcacatgggttttttaa 40054
>emb|CR388077.11| Zebrafish DNA sequence from clone CH211-286E11 in linkage group 8, complete sequence Length = 192705 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 atttaccatgacatttattgccat 79 |||| ||||||||||||||||||| Sbjct: 181438 attttccatgacatttattgccat 181415
>emb|CR361543.9| Zebrafish DNA sequence from clone CH211-25E11 in linkage group 8, complete sequence Length = 66809 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 atttaccatgacatttattgccat 79 ||||| |||||||||||||||||| Sbjct: 7238 atttaacatgacatttattgccat 7215
>emb|AL161613.23| Human DNA sequence from clone RP11-22J15 on chromosome 13 Contains the 5' end of the LATS2 gene for LATS, large tumor suppressor, homolog 2 (LATS (large tumor suppressor, Drosophila) homolog 2), a ribosomal protein S12 (40S ribosomal protein S12) (RPS12) pseudogene, a chromosome 9 open reading frame 12 (C9orf12) (INSP5K2, FLJ13161)pseudogene and two CpG islands, complete sequence Length = 113372 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 acatgggttttttaatttta 231 |||||||||||||||||||| Sbjct: 38500 acatgggttttttaatttta 38481
>emb|AL137878.11| Human DNA sequence from clone RP11-145J3 on chromosome 13 Contains the 3' end of the EPSTI1 gene for epithelial stromal interaction 1 (breast), a novel gene and a pseudogene, complete sequence Length = 87358 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 catgacatttattgccatgt 81 |||||||||||||||||||| Sbjct: 16168 catgacatttattgccatgt 16149
>emb|BX548071.7| Zebrafish DNA sequence from clone DKEY-25L23 in linkage group 9, complete sequence Length = 223099 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 atttaccatgacatttattgccat 79 ||||| |||||||||||||||||| Sbjct: 125126 atttaacatgacatttattgccat 125149
>emb|CR847543.13| Zebrafish DNA sequence from clone DKEY-183P4 in linkage group 8, complete sequence Length = 207382 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 atttaccatgacatttattgccat 79 ||||| |||||||||||||||||| Sbjct: 192648 atttaacatgacatttattgccat 192671
>gb|AC183273.3| Pan troglodytes BAC clone CH251-142H10 from chromosome 7, complete sequence Length = 180027 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 tgtgagagagatggtactac 115 |||||||||||||||||||| Sbjct: 66435 tgtgagagagatggtactac 66454
>emb|BX323602.7| Zebrafish DNA sequence from clone RP71-61H23, complete sequence Length = 156514 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 atttaccatgacatttattgccat 79 ||||| |||||||||||||||||| Sbjct: 10463 atttaacatgacatttattgccat 10440
>emb|BX004888.9| Zebrafish DNA sequence from clone DKEY-8F21 in linkage group 1, complete sequence Length = 219280 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 atttaccatgacatttattgccat 79 ||||||| |||||||||||||||| Sbjct: 141204 atttaccttgacatttattgccat 141181
>emb|BX470204.13| Zebrafish DNA sequence from clone CH211-63C23 in linkage group 10, complete sequence Length = 185190 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 atttaccatgacatttattgccat 79 ||||||||| |||||||||||||| Sbjct: 65279 atttaccataacatttattgccat 65302
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 atgcacatgggttttttaat 227 |||||||||||||||||||| Sbjct: 11161734 atgcacatgggttttttaat 11161753
>emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 in linkage group 8, complete sequence Length = 209195 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 atttaccatgacatttattgccat 79 ||||| |||||||||||||||||| Sbjct: 134576 atttaacatgacatttattgccat 134553
>emb|BX072550.6| Zebrafish DNA sequence from clone DKEY-24P1 in linkage group 15, complete sequence Length = 229061 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 atttaccatgacatttattgccat 79 ||||| |||||||||||||||||| Sbjct: 79692 atttaacatgacatttattgccat 79715
>emb|AL731637.2|OSJN00278 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I09, complete sequence Length = 141580 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 atgcacatgggttttttaat 227 |||||||||||||||||||| Sbjct: 30358 atgcacatgggttttttaat 30377 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,688,319 Number of Sequences: 3902068 Number of extensions: 2688319 Number of successful extensions: 55023 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54971 Number of HSP's gapped (non-prelim): 52 length of query: 234 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 212 effective length of database: 17,147,199,772 effective search space: 3635206351664 effective search space used: 3635206351664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)