ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl09g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR382292.9| Zebrafish DNA sequence from clone DKEY-96L17 in ... 44 0.19
2emb|BX323038.3| Zebrafish DNA sequence from clone DKEYP-57D7 in ... 44 0.19
3emb|BX936452.24| Zebrafish DNA sequence from clone CH211-282C13 ... 42 0.76
4gb|AC142291.1| Pan troglodytes BAC clone RP43-184P18 from 7, com... 42 0.76
5emb|CR388077.11| Zebrafish DNA sequence from clone CH211-286E11 ... 40 3.0
6emb|CR361543.9| Zebrafish DNA sequence from clone CH211-25E11 in... 40 3.0
7emb|AL161613.23| Human DNA sequence from clone RP11-22J15 on chr... 40 3.0
8emb|AL137878.11| Human DNA sequence from clone RP11-145J3 on chr... 40 3.0
9emb|BX548071.7| Zebrafish DNA sequence from clone DKEY-25L23 in ... 40 3.0
10emb|CR847543.13| Zebrafish DNA sequence from clone DKEY-183P4 in... 40 3.0
11gb|AC183273.3| Pan troglodytes BAC clone CH251-142H10 from chrom... 40 3.0
12emb|BX323602.7| Zebrafish DNA sequence from clone RP71-61H23, co... 40 3.0
13emb|BX004888.9| Zebrafish DNA sequence from clone DKEY-8F21 in l... 40 3.0
14emb|BX470204.13| Zebrafish DNA sequence from clone CH211-63C23 i... 40 3.0
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.0
16emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 i... 40 3.0
17emb|BX072550.6| Zebrafish DNA sequence from clone DKEY-24P1 in l... 40 3.0
18emb|AL731637.2|OSJN00278 Oryza sativa genomic DNA, chromosome 4,... 40 3.0

>emb|CR382292.9| Zebrafish DNA sequence from clone DKEY-96L17 in linkage group 5, complete
              sequence
          Length = 178208

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 62     catgacatttattgccatgtac 83
              ||||||||||||||||||||||
Sbjct: 130498 catgacatttattgccatgtac 130519



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>emb|BX323038.3| Zebrafish DNA sequence from clone DKEYP-57D7 in linkage group 1,
             complete sequence
          Length = 87548

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 62    catgacatttattgccatgtac 83
             ||||||||||||||||||||||
Sbjct: 10888 catgacatttattgccatgtac 10867



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>emb|BX936452.24| Zebrafish DNA sequence from clone CH211-282C13 in linkage group 13,
             complete sequence
          Length = 136110

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 62    catgacatttattgccatgta 82
             |||||||||||||||||||||
Sbjct: 16063 catgacatttattgccatgta 16043



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>gb|AC142291.1| Pan troglodytes BAC clone RP43-184P18 from 7, complete sequence
          Length = 152668

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 206   ttatgcacatgggttttttaa 226
             |||||||||||||||||||||
Sbjct: 40034 ttatgcacatgggttttttaa 40054



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>emb|CR388077.11| Zebrafish DNA sequence from clone CH211-286E11 in linkage group 8,
              complete sequence
          Length = 192705

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 56     atttaccatgacatttattgccat 79
              |||| |||||||||||||||||||
Sbjct: 181438 attttccatgacatttattgccat 181415



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>emb|CR361543.9| Zebrafish DNA sequence from clone CH211-25E11 in linkage group 8,
            complete sequence
          Length = 66809

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 56   atttaccatgacatttattgccat 79
            ||||| ||||||||||||||||||
Sbjct: 7238 atttaacatgacatttattgccat 7215



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>emb|AL161613.23| Human DNA sequence from clone RP11-22J15 on chromosome 13 Contains the
             5' end of the LATS2 gene for LATS, large tumor suppressor,
             homolog 2 (LATS (large tumor suppressor, Drosophila)
             homolog 2), a ribosomal protein S12 (40S ribosomal protein
             S12) (RPS12) pseudogene, a chromosome 9 open reading frame
             12 (C9orf12) (INSP5K2, FLJ13161)pseudogene and two CpG
             islands, complete sequence
          Length = 113372

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   acatgggttttttaatttta 231
             ||||||||||||||||||||
Sbjct: 38500 acatgggttttttaatttta 38481



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>emb|AL137878.11| Human DNA sequence from clone RP11-145J3 on chromosome 13 Contains the
             3' end of the EPSTI1 gene for epithelial stromal
             interaction 1 (breast), a  novel gene and a pseudogene,
             complete sequence
          Length = 87358

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    catgacatttattgccatgt 81
             ||||||||||||||||||||
Sbjct: 16168 catgacatttattgccatgt 16149



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>emb|BX548071.7| Zebrafish DNA sequence from clone DKEY-25L23 in linkage group 9, complete
              sequence
          Length = 223099

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 56     atttaccatgacatttattgccat 79
              ||||| ||||||||||||||||||
Sbjct: 125126 atttaacatgacatttattgccat 125149



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>emb|CR847543.13| Zebrafish DNA sequence from clone DKEY-183P4 in linkage group 8, complete
              sequence
          Length = 207382

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 56     atttaccatgacatttattgccat 79
              ||||| ||||||||||||||||||
Sbjct: 192648 atttaacatgacatttattgccat 192671



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>gb|AC183273.3| Pan troglodytes BAC clone CH251-142H10 from chromosome 7, complete
             sequence
          Length = 180027

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    tgtgagagagatggtactac 115
             ||||||||||||||||||||
Sbjct: 66435 tgtgagagagatggtactac 66454



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>emb|BX323602.7| Zebrafish DNA sequence from clone RP71-61H23, complete sequence
          Length = 156514

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    atttaccatgacatttattgccat 79
             ||||| ||||||||||||||||||
Sbjct: 10463 atttaacatgacatttattgccat 10440



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>emb|BX004888.9| Zebrafish DNA sequence from clone DKEY-8F21 in linkage group 1, complete
              sequence
          Length = 219280

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 56     atttaccatgacatttattgccat 79
              ||||||| ||||||||||||||||
Sbjct: 141204 atttaccttgacatttattgccat 141181



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>emb|BX470204.13| Zebrafish DNA sequence from clone CH211-63C23 in linkage group 10,
             complete sequence
          Length = 185190

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 56    atttaccatgacatttattgccat 79
             ||||||||| ||||||||||||||
Sbjct: 65279 atttaccataacatttattgccat 65302



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 208      atgcacatgggttttttaat 227
                ||||||||||||||||||||
Sbjct: 11161734 atgcacatgggttttttaat 11161753



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>emb|AL954309.11| Zebrafish DNA sequence from clone CH211-213D2 in linkage group 8,
              complete sequence
          Length = 209195

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 56     atttaccatgacatttattgccat 79
              ||||| ||||||||||||||||||
Sbjct: 134576 atttaacatgacatttattgccat 134553



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>emb|BX072550.6| Zebrafish DNA sequence from clone DKEY-24P1 in linkage group 15,
             complete sequence
          Length = 229061

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 56    atttaccatgacatttattgccat 79
             ||||| ||||||||||||||||||
Sbjct: 79692 atttaacatgacatttattgccat 79715



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>emb|AL731637.2|OSJN00278 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I09,
             complete sequence
          Length = 141580

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   atgcacatgggttttttaat 227
             ||||||||||||||||||||
Sbjct: 30358 atgcacatgggttttttaat 30377


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,688,319
Number of Sequences: 3902068
Number of extensions: 2688319
Number of successful extensions: 55023
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54971
Number of HSP's gapped (non-prelim): 52
length of query: 234
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 212
effective length of database: 17,147,199,772
effective search space: 3635206351664
effective search space used: 3635206351664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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